Wall clock time and date at job start Tue Mar 31 2020 15:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38046 * 126.29329 * 2 1 4 4 C 1.47435 * 126.41375 * 0.02562 * 3 2 1 5 5 O 1.21606 * 119.99471 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99933 * 179.97438 * 4 3 2 7 7 C 1.46496 * 119.99642 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47194 * 60.00363 * 7 6 4 9 9 C 1.53006 * 109.46995 * 180.02562 * 7 6 4 10 10 C 1.52997 * 109.47127 * 180.02562 * 9 7 6 11 11 F 1.39895 * 109.47162 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47248 * 300.00066 * 7 6 4 13 13 O 1.20832 * 120.00139 * 145.00066 * 12 7 6 14 14 O 1.34226 * 120.00201 * 324.99961 * 12 7 6 15 15 C 1.41291 * 107.17372 * 180.26321 * 3 2 1 16 16 N 1.30450 * 108.02207 * 359.59362 * 15 3 2 17 17 N 1.34262 * 126.29256 * 180.02562 * 2 1 3 18 18 C 1.46499 * 125.75315 * 359.97438 * 17 2 1 19 19 C 1.50704 * 109.47005 * 90.00212 * 18 17 2 20 20 H 1.07997 * 119.99788 * 0.02562 * 19 18 17 21 21 C 1.37875 * 119.99988 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99856 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00068 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46787 * 60.00160 * 23 21 19 25 25 H 1.48497 * 109.46989 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.46791 * 300.00249 * 23 21 19 27 27 H 1.08998 * 109.47118 * 89.97340 * 1 2 3 28 28 H 1.08995 * 109.47077 * 209.97484 * 1 2 3 29 29 H 1.09002 * 109.47025 * 329.97233 * 1 2 3 30 30 H 0.96998 * 120.00166 * 0.02562 * 6 4 3 31 31 H 1.09000 * 109.47140 * 179.97438 * 8 7 6 32 32 H 1.09001 * 109.47230 * 299.99110 * 8 7 6 33 33 H 1.09001 * 109.47375 * 59.99949 * 8 7 6 34 34 H 1.09001 * 109.47002 * 299.99701 * 9 7 6 35 35 H 1.08993 * 109.46955 * 60.00138 * 9 7 6 36 36 H 1.09001 * 109.47289 * 299.99953 * 10 9 7 37 37 H 1.09004 * 109.47261 * 59.99697 * 10 9 7 38 38 H 0.96697 * 117.00347 * 179.97438 * 14 12 7 39 39 H 1.07995 * 125.99007 * 179.73433 * 15 3 2 40 40 H 1.09003 * 109.47063 * 210.00015 * 18 17 2 41 41 H 1.08994 * 109.47377 * 330.00065 * 18 17 2 42 42 H 0.97006 * 119.99710 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5204 0.0005 5 8 0.6995 2.7877 0.0006 6 7 2.7999 3.5107 0.0010 7 6 2.3644 4.9094 0.0021 8 6 1.5245 5.1811 1.2517 9 6 3.5901 5.8252 0.0018 10 6 3.1353 7.2860 0.0035 11 9 4.2559 8.1234 0.0038 12 6 1.5364 5.1787 -1.2279 13 8 0.6045 5.9459 -1.1729 14 8 1.8342 4.5664 -2.3847 15 6 3.6590 0.6499 -0.0062 16 7 3.6341 -0.6544 -0.0009 17 7 2.3016 -1.0822 -0.0005 18 6 1.8500 -2.4758 -0.0006 19 6 1.6947 -2.9534 -1.4215 20 1 1.9112 -2.2857 -2.2423 21 6 1.2773 -4.2431 -1.6735 22 7 1.0142 -5.0562 -0.6739 23 14 1.0841 -4.8349 -3.4348 24 1 2.3895 -4.7368 -4.1358 25 1 0.6265 -6.2476 -3.4348 26 1 0.0823 -3.9904 -4.1335 27 1 -0.3633 0.0005 -1.0276 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3633 0.8898 0.5143 30 1 3.7461 3.2974 0.0006 31 1 1.2008 6.2219 1.2528 32 1 0.6513 4.5288 1.2515 33 1 2.1234 4.9863 2.1414 34 1 4.1893 5.6306 0.8913 35 1 4.1880 5.6316 -0.8887 36 1 2.5358 7.4810 -0.8857 37 1 2.5374 7.4794 0.8943 38 1 1.2744 4.7706 -3.1463 39 1 4.5448 1.2676 -0.0119 40 1 2.5849 -3.0959 0.5129 41 1 0.8916 -2.5472 0.5135 42 1 0.7201 -5.9635 -0.8513 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599978507.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:06 Heat of formation + Delta-G solvation = -139.191247 kcal Electronic energy + Delta-G solvation = -28316.043638 eV Core-core repulsion = 24017.863902 eV Total energy + Delta-G solvation = -4298.179736 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 327.143 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.63561 -42.42396 -41.83027 -39.97615 -37.52903 -36.98357 -35.81422 -34.09326 -33.36075 -32.65231 -30.02294 -29.00237 -28.17772 -26.57407 -25.33266 -24.62608 -23.40754 -21.57554 -20.88578 -20.52693 -19.18384 -18.86777 -18.63259 -18.16141 -17.41183 -17.23357 -16.79383 -16.40709 -16.18720 -16.12100 -15.86637 -15.71987 -15.36882 -15.25432 -14.78088 -14.51746 -14.28898 -14.07947 -13.70387 -13.63980 -13.54575 -13.44161 -13.09475 -13.05199 -12.96825 -12.69857 -12.68674 -12.56576 -12.30432 -12.25048 -11.88283 -11.82390 -11.68680 -11.55821 -10.76457 -10.74306 -10.31773 -10.25660 -9.46118 -8.37965 -6.54330 0.65930 1.06248 1.33557 1.38667 1.39286 1.47507 1.62331 1.94472 2.14543 2.32547 2.56253 2.94395 3.28791 3.57174 3.63606 3.74471 3.78798 3.92147 4.07807 4.11658 4.22017 4.29756 4.46102 4.55087 4.62246 4.69339 4.70699 4.76595 4.80408 4.90634 4.98507 5.06678 5.17966 5.25204 5.33113 5.48979 5.55928 5.69568 5.74983 6.04447 6.53556 6.54739 6.86393 6.89825 7.16815 7.27711 8.69675 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.023201 B = 0.002738 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.530836 B =10224.742381 C =10440.215880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.147 3.853 3 C -0.327 4.327 4 C 0.614 3.386 5 O -0.572 6.572 6 N -0.700 5.700 7 C 0.201 3.799 8 C -0.162 4.162 9 C -0.148 4.148 10 C 0.059 3.941 11 F -0.222 7.222 12 C 0.478 3.522 13 O -0.536 6.536 14 O -0.509 6.509 15 C 0.083 3.917 16 N -0.337 5.337 17 N -0.339 5.339 18 C 0.268 3.732 19 C -0.556 4.556 20 H 0.052 0.948 21 C 0.024 3.976 22 N -0.917 5.917 23 Si 0.970 3.030 24 H -0.272 1.272 25 H -0.274 1.274 26 H -0.267 1.267 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.102 0.898 30 H 0.422 0.578 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.132 0.868 35 H 0.104 0.896 36 H 0.067 0.933 37 H 0.101 0.899 38 H 0.422 0.578 39 H 0.231 0.769 40 H 0.032 0.968 41 H 0.050 0.950 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.200 22.309 2.061 23.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.011 3.989 3 C -0.343 4.343 4 C 0.404 3.596 5 O -0.453 6.453 6 N -0.356 5.356 7 C 0.113 3.887 8 C -0.220 4.220 9 C -0.185 4.185 10 C 0.003 3.997 11 F -0.203 7.203 12 C 0.320 3.680 13 O -0.425 6.425 14 O -0.322 6.322 15 C -0.104 4.104 16 N -0.156 5.156 17 N -0.115 5.115 18 C 0.149 3.851 19 C -0.594 4.594 20 H 0.070 0.930 21 C -0.177 4.177 22 N -0.555 5.555 23 Si 0.794 3.206 24 H -0.197 1.197 25 H -0.198 1.198 26 H -0.192 1.192 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.121 0.879 30 H 0.261 0.739 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.150 0.850 35 H 0.122 0.878 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.283 0.717 39 H 0.247 0.753 40 H 0.050 0.950 41 H 0.067 0.933 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.018 21.188 2.464 21.913 hybrid contribution -0.707 -0.162 -1.442 1.614 sum 4.311 21.025 1.021 21.487 Atomic orbital electron populations 1.20539 0.86127 1.04020 1.03759 1.21935 0.95798 0.86847 0.94362 1.19811 0.93308 0.92580 1.28566 1.17088 0.84944 0.83782 0.73741 1.90708 1.17928 1.84319 1.52311 1.45468 1.10693 1.02900 1.76493 1.20085 0.94962 0.83373 0.90288 1.22288 1.00767 1.03854 0.95074 1.22427 0.95276 0.92518 1.08321 1.22111 0.85020 0.87404 1.05138 1.92769 1.55842 1.73439 1.98280 1.24120 0.82557 0.75987 0.85327 1.90696 1.29653 1.36506 1.85650 1.84528 1.59928 1.66497 1.21229 1.24568 0.97645 0.91550 0.96665 1.77116 0.98179 1.14584 1.25716 1.49097 1.03468 1.07706 1.51260 1.19346 0.95263 0.72447 0.98057 1.21373 1.47973 0.98463 0.91627 0.92952 1.25718 0.93841 0.95964 1.02201 1.69989 1.44792 1.07608 1.33083 0.85423 0.78852 0.77657 0.78716 1.19736 1.19842 1.19207 0.90169 0.91185 0.87934 0.73894 0.89433 0.92273 0.88217 0.85028 0.87756 0.91442 0.88094 0.71698 0.75302 0.95024 0.93262 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.08 9.57 71.23 0.68 -2.40 16 2 C 0.15 5.74 7.01 42.14 0.30 6.04 16 3 C -0.33 -10.67 6.13 -20.15 -0.12 -10.80 16 4 C 0.61 17.27 7.14 86.67 0.62 17.89 16 5 O -0.57 -19.34 12.04 -4.05 -0.05 -19.39 16 6 N -0.70 -12.75 4.87 -429.56 -2.09 -14.84 16 7 C 0.20 3.37 0.80 2.86 0.00 3.37 16 8 C -0.16 -2.81 7.58 71.98 0.55 -2.26 16 9 C -0.15 -1.43 4.83 30.60 0.15 -1.28 16 10 C 0.06 0.70 6.89 71.98 0.50 1.19 16 11 F -0.22 -3.48 17.36 44.97 0.78 -2.70 16 12 C 0.48 10.66 4.79 71.24 0.34 11.00 16 13 O -0.54 -14.49 16.22 21.95 0.36 -14.14 16 14 O -0.51 -10.26 13.03 -51.38 -0.67 -10.93 16 15 C 0.08 2.48 11.50 85.65 0.99 3.47 16 16 N -0.34 -13.72 12.50 -56.27 -0.70 -14.42 16 17 N -0.34 -15.08 3.56 -336.70 -1.20 -16.28 16 18 C 0.27 13.56 5.97 85.63 0.51 14.07 16 19 C -0.56 -30.22 9.39 25.60 0.24 -29.98 16 20 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 21 C 0.02 1.30 5.46 84.65 0.46 1.76 16 22 N -0.92 -50.87 13.29 21.45 0.28 -50.59 16 23 Si 0.97 42.16 29.54 68.60 2.03 44.18 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 27 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 28 H 0.07 2.49 7.05 -2.39 -0.02 2.48 16 29 H 0.10 3.42 6.50 -2.39 -0.02 3.41 16 30 H 0.42 4.88 7.43 -92.71 -0.69 4.19 16 31 H 0.09 1.32 6.16 -2.39 -0.01 1.30 16 32 H 0.06 1.48 6.16 -2.39 -0.01 1.46 16 33 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.07 0.95 6.82 -2.39 -0.02 0.93 16 37 H 0.10 0.94 6.43 -2.38 -0.02 0.93 16 38 H 0.42 5.61 9.10 -74.06 -0.67 4.93 16 39 H 0.23 3.97 7.50 -2.91 -0.02 3.95 16 40 H 0.03 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.05 2.51 7.02 -2.39 -0.02 2.49 16 42 H 0.27 14.27 8.31 -92.70 -0.77 13.50 16 Total: -1.00 -73.29 357.78 3.68 -69.62 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -0.26 Total: 17.42 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 5.20 Total: 12.06 kcal Atomic # 7 Polarization: -92.41 SS G_CDS: -3.71 Total: -96.12 kcal Atomic # 8 Polarization: -44.10 SS G_CDS: -0.36 Total: -44.46 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.78 Total: -2.70 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.18 kcal Total: -73.29 3.68 -69.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599978507.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.576 kcal (2) G-P(sol) polarization free energy of solvation -73.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds