Wall clock time and date at job start Tue Mar 31 2020 14:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38828 * 120.37566 * 2 1 4 4 C 1.39499 * 118.41901 * 180.02562 * 3 2 1 5 5 C 1.48386 * 120.50937 * 180.02562 * 4 3 2 6 6 O 1.21391 * 119.99630 * 359.97402 * 5 4 3 7 7 O 1.34642 * 119.99980 * 179.97438 * 5 4 3 8 8 N 1.33096 * 118.98148 * 359.97438 * 4 3 2 9 9 C 1.32248 * 120.65995 * 0.02562 * 8 4 3 10 10 N 1.38432 * 119.13742 * 179.97438 * 9 8 4 11 11 C 1.46504 * 119.99717 * 359.97438 * 10 9 8 12 12 H 1.08998 * 109.47379 * 324.99974 * 11 10 9 13 13 C 1.53004 * 109.46606 * 205.00273 * 11 10 9 14 14 C 1.50701 * 109.47211 * 65.00557 * 13 11 10 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 13 11 16 16 C 1.37871 * 119.99694 * 180.27574 * 14 13 11 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 13 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 13 19 19 H 1.48504 * 109.47266 * 60.00049 * 18 16 14 20 20 H 1.48504 * 109.46970 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47383 * 299.99456 * 18 16 14 22 22 C 1.50699 * 109.47140 * 85.00584 * 11 10 9 23 23 C 1.38238 * 119.99993 * 39.72257 * 22 11 10 24 24 C 1.38236 * 119.99682 * 179.79324 * 23 22 11 25 25 C 1.38230 * 119.99943 * 0.43576 * 24 23 22 26 26 C 1.38227 * 120.00336 * 359.82030 * 25 24 23 27 27 C 1.38234 * 120.00075 * 359.97223 * 26 25 24 28 28 N 1.32096 * 120.37899 * 180.26205 * 2 1 3 29 29 H 1.09002 * 109.47467 * 89.99605 * 1 2 3 30 30 H 1.09006 * 109.46821 * 209.99667 * 1 2 3 31 31 H 1.09007 * 109.47035 * 329.99244 * 1 2 3 32 32 H 1.07995 * 120.79194 * 359.97438 * 3 2 1 33 33 H 0.96701 * 116.99470 * 179.97438 * 7 5 4 34 34 H 0.97001 * 119.99879 * 179.97438 * 10 9 8 35 35 H 1.09000 * 109.47211 * 304.99584 * 13 11 10 36 36 H 1.09007 * 109.46376 * 185.00126 * 13 11 10 37 37 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 38 38 H 1.07999 * 120.00059 * 359.97438 * 23 22 11 39 39 H 1.07995 * 119.99484 * 180.27633 * 24 23 22 40 40 H 1.08003 * 119.99818 * 179.83313 * 25 24 23 41 41 H 1.08005 * 120.00612 * 180.02562 * 26 25 24 42 42 H 1.08006 * 120.00429 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1977 0.0000 4 6 3.6032 1.1501 -0.0005 5 6 4.3997 2.4020 0.0000 6 8 3.8385 3.4784 0.0005 7 8 5.7449 2.3441 0.0000 8 7 4.2079 -0.0356 -0.0005 9 6 3.5010 -1.1532 -0.0005 10 7 4.1625 -2.3692 -0.0010 11 6 5.6271 -2.4063 -0.0022 12 1 6.0112 -1.5740 -0.5919 13 6 6.1032 -3.7262 -0.6123 14 6 5.7020 -3.7823 -2.0638 15 1 5.1610 -2.9592 -2.5067 16 6 6.0200 -4.8873 -2.8246 17 7 6.6785 -5.8898 -2.2852 18 14 5.5158 -4.9603 -4.6218 19 1 6.1359 -3.8283 -5.3563 20 1 5.9738 -6.2434 -5.2126 21 1 4.0373 -4.8670 -4.7253 22 6 6.1335 -2.2954 1.4129 23 6 5.4796 -2.9578 2.4349 24 6 5.9466 -2.8594 3.7323 25 6 7.0622 -2.0915 4.0088 26 6 7.7130 -1.4249 2.9877 27 6 7.2485 -1.5266 1.6897 28 7 2.1750 -1.1396 -0.0052 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8900 0.5140 32 1 1.6882 2.1438 -0.0004 33 1 6.2205 3.1861 0.0000 34 1 3.6563 -3.1967 -0.0006 35 1 5.6478 -4.5592 -0.0768 36 1 7.1884 -3.7927 -0.5324 37 1 6.9019 -6.6673 -2.8204 38 1 4.6055 -3.5544 2.2194 39 1 5.4384 -3.3805 4.5300 40 1 7.4256 -2.0125 5.0228 41 1 8.5849 -0.8252 3.2036 42 1 7.7572 -1.0061 0.8916 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600128274.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:12 Heat of formation + Delta-G solvation = -12.760381 kcal Electronic energy + Delta-G solvation = -27377.050607 eV Core-core repulsion = 23515.122550 eV Total energy + Delta-G solvation = -3861.928057 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.13008 -39.87930 -38.99341 -36.38174 -36.12376 -34.25428 -33.29931 -32.16984 -30.55388 -30.07306 -28.76505 -28.38831 -25.67497 -24.97322 -22.58532 -22.22026 -21.91822 -21.47998 -19.95484 -18.67377 -17.71821 -16.98923 -16.64385 -16.16499 -16.10443 -15.94767 -15.24352 -15.03449 -14.80645 -14.65673 -14.53033 -13.66735 -13.49387 -13.36000 -13.19271 -13.00438 -12.78860 -12.56295 -12.43378 -12.11496 -11.69549 -11.54699 -11.17415 -11.08683 -11.00739 -10.87432 -10.81145 -10.70764 -10.53354 -10.43460 -10.09349 -9.68948 -9.26879 -9.06359 -8.53267 -8.46716 -8.20837 -7.74096 -6.09833 -4.13347 0.53690 1.28924 1.76555 1.80408 2.46223 2.68198 3.23914 3.28806 3.33369 3.36444 4.01448 4.10500 4.21488 4.39393 4.70908 4.79616 5.06043 5.23957 5.26050 5.27033 5.29206 5.35836 5.44352 5.45708 5.53989 5.74327 5.77773 5.90543 5.94246 6.11261 6.22435 6.28029 6.34475 6.43047 6.55498 6.84351 6.84997 6.92945 7.08981 7.21219 7.40250 7.46548 7.60571 7.77557 7.85926 7.89475 8.23517 8.56565 8.91645 9.51744 11.00598 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.007962 B = 0.005000 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3516.003747 B = 5598.291166 C = 7255.125672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.221 3.779 3 C -0.248 4.248 4 C 0.188 3.812 5 C 0.548 3.452 6 O -0.505 6.505 7 O -0.484 6.484 8 N -0.521 5.521 9 C 0.577 3.423 10 N -0.657 5.657 11 C 0.196 3.804 12 H 0.093 0.907 13 C 0.023 3.977 14 C -0.521 4.521 15 H 0.056 0.944 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.072 4.072 23 C -0.108 4.108 24 C -0.126 4.126 25 C -0.134 4.134 26 C -0.124 4.124 27 C -0.102 4.102 28 N -0.554 5.554 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.151 0.849 33 H 0.412 0.588 34 H 0.418 0.582 35 H 0.025 0.975 36 H 0.038 0.962 37 H 0.263 0.737 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.863 12.705 9.175 16.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.070 3.930 3 C -0.276 4.276 4 C 0.039 3.961 5 C 0.389 3.611 6 O -0.392 6.392 7 O -0.293 6.293 8 N -0.248 5.248 9 C 0.220 3.780 10 N -0.289 5.289 11 C 0.091 3.909 12 H 0.111 0.889 13 C -0.014 4.014 14 C -0.559 4.559 15 H 0.074 0.926 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.074 4.074 23 C -0.126 4.126 24 C -0.144 4.144 25 C -0.153 4.153 26 C -0.142 4.142 27 C -0.120 4.120 28 N -0.278 5.278 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.169 0.831 33 H 0.270 0.730 34 H 0.256 0.744 35 H 0.043 0.957 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.133 0.867 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.374 11.509 9.111 15.631 hybrid contribution -0.415 0.823 -1.012 1.369 sum -5.789 12.332 8.099 15.848 Atomic orbital electron populations 1.20775 0.87530 1.03995 1.03808 1.21396 0.97125 0.86770 0.87750 1.22165 0.93488 1.00946 1.10996 1.19924 0.90242 0.89957 0.95963 1.20530 0.81011 0.87724 0.71794 1.90880 1.72566 1.29814 1.45939 1.84741 1.19178 1.41018 1.84407 1.67926 1.39910 0.96960 1.19981 1.19302 0.84319 0.86960 0.87446 1.44535 1.06934 1.02855 1.74552 1.20369 0.76672 1.03285 0.90537 0.88856 1.19413 0.97605 0.88854 0.95519 1.21063 1.36807 1.03184 0.94831 0.92559 1.24963 0.95004 0.95631 0.98401 1.69940 1.39391 1.07148 1.36518 0.86663 0.78985 0.77253 0.85150 1.20251 1.21253 1.20266 1.20547 0.95178 0.95252 0.96407 1.20930 0.99898 0.99271 0.92485 1.21030 0.97173 0.99693 0.96527 1.20990 0.96734 0.98849 0.98682 1.21032 0.99870 1.00186 0.93115 1.20994 0.96384 0.98171 0.96472 1.67705 1.08003 1.30858 1.21261 0.89510 0.89793 0.90035 0.83116 0.73027 0.74398 0.95665 0.94396 0.92782 0.86654 0.86843 0.86931 0.86657 0.86015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 10.21 36.01 0.37 -0.56 16 2 C 0.22 2.98 6.83 -82.26 -0.56 2.42 16 3 C -0.25 -3.34 9.39 -38.89 -0.37 -3.70 16 4 C 0.19 2.93 6.79 -82.67 -0.56 2.37 16 5 C 0.55 7.67 8.34 34.91 0.29 7.97 16 6 O -0.51 -7.42 17.20 -19.18 -0.33 -7.75 16 7 O -0.48 -5.79 13.28 -40.34 -0.54 -6.32 16 8 N -0.52 -9.25 9.01 -10.50 -0.09 -9.35 16 9 C 0.58 10.45 8.39 -322.95 -2.71 7.74 16 10 N -0.66 -12.29 4.17 -56.95 -0.24 -12.52 16 11 C 0.20 3.89 2.11 -69.08 -0.15 3.74 16 12 H 0.09 1.98 7.36 -51.93 -0.38 1.59 16 13 C 0.02 0.56 4.50 -27.88 -0.13 0.43 16 14 C -0.52 -13.77 8.84 -34.44 -0.30 -14.08 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -25.54 13.29 55.43 0.74 -24.80 16 18 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.07 -1.31 4.93 -104.62 -0.52 -1.82 16 23 C -0.11 -1.82 9.33 -39.58 -0.37 -2.19 16 24 C -0.13 -1.88 10.05 -39.58 -0.40 -2.28 16 25 C -0.13 -1.89 10.05 -39.59 -0.40 -2.28 16 26 C -0.12 -1.80 10.05 -39.59 -0.40 -2.20 16 27 C -0.10 -1.69 9.67 -39.58 -0.38 -2.07 16 28 N -0.55 -9.14 10.37 -10.16 -0.11 -9.24 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 32 H 0.15 1.68 7.73 -52.49 -0.41 1.28 16 33 H 0.41 2.58 9.11 45.56 0.42 3.00 16 34 H 0.42 7.72 8.72 -40.82 -0.36 7.37 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.12 1.90 7.71 -52.49 -0.40 1.50 16 39 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.11 1.28 8.06 -52.48 -0.42 0.85 16 41 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 42 H 0.12 1.93 8.04 -52.48 -0.42 1.51 16 LS Contribution 372.65 15.07 5.62 5.62 Total: -1.00 -32.19 372.65 -11.12 -43.32 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -4.48 Total: 9.76 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -6.67 Total: -4.91 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: 0.30 Total: -55.91 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.87 Total: -14.08 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.19 -11.12 -43.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600128274.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.555 kcal (2) G-P(sol) polarization free energy of solvation -32.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds