Wall clock time and date at job start Tue Mar 31 2020 14:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38828 * 120.37566 * 2 1 4 4 C 1.39499 * 118.41901 * 180.02562 * 3 2 1 5 5 C 1.48386 * 120.50937 * 180.02562 * 4 3 2 6 6 O 1.21391 * 119.99630 * 359.97402 * 5 4 3 7 7 O 1.34642 * 119.99980 * 179.97438 * 5 4 3 8 8 N 1.33096 * 118.98148 * 359.97438 * 4 3 2 9 9 C 1.32248 * 120.65995 * 0.02562 * 8 4 3 10 10 N 1.38432 * 119.13742 * 179.97438 * 9 8 4 11 11 C 1.46504 * 119.99717 * 359.97438 * 10 9 8 12 12 H 1.08998 * 109.47379 * 324.99974 * 11 10 9 13 13 C 1.53004 * 109.46606 * 205.00273 * 11 10 9 14 14 C 1.50701 * 109.47211 * 65.00557 * 13 11 10 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 13 11 16 16 C 1.37871 * 119.99694 * 180.27574 * 14 13 11 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 13 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 13 19 19 H 1.48504 * 109.47266 * 60.00049 * 18 16 14 20 20 H 1.48504 * 109.46970 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47383 * 299.99456 * 18 16 14 22 22 C 1.50699 * 109.47140 * 85.00584 * 11 10 9 23 23 C 1.38238 * 119.99993 * 39.72257 * 22 11 10 24 24 C 1.38236 * 119.99682 * 179.79324 * 23 22 11 25 25 C 1.38230 * 119.99943 * 0.43576 * 24 23 22 26 26 C 1.38227 * 120.00336 * 359.82030 * 25 24 23 27 27 C 1.38234 * 120.00075 * 359.97223 * 26 25 24 28 28 N 1.32096 * 120.37899 * 180.26205 * 2 1 3 29 29 H 1.09002 * 109.47467 * 89.99605 * 1 2 3 30 30 H 1.09006 * 109.46821 * 209.99667 * 1 2 3 31 31 H 1.09007 * 109.47035 * 329.99244 * 1 2 3 32 32 H 1.07995 * 120.79194 * 359.97438 * 3 2 1 33 33 H 0.96701 * 116.99470 * 179.97438 * 7 5 4 34 34 H 0.97001 * 119.99879 * 179.97438 * 10 9 8 35 35 H 1.09000 * 109.47211 * 304.99584 * 13 11 10 36 36 H 1.09007 * 109.46376 * 185.00126 * 13 11 10 37 37 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 38 38 H 1.07999 * 120.00059 * 359.97438 * 23 22 11 39 39 H 1.07995 * 119.99484 * 180.27633 * 24 23 22 40 40 H 1.08003 * 119.99818 * 179.83313 * 25 24 23 41 41 H 1.08005 * 120.00612 * 180.02562 * 26 25 24 42 42 H 1.08006 * 120.00429 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1977 0.0000 4 6 3.6032 1.1501 -0.0005 5 6 4.3997 2.4020 0.0000 6 8 3.8385 3.4784 0.0005 7 8 5.7449 2.3441 0.0000 8 7 4.2079 -0.0356 -0.0005 9 6 3.5010 -1.1532 -0.0005 10 7 4.1625 -2.3692 -0.0010 11 6 5.6271 -2.4063 -0.0022 12 1 6.0112 -1.5740 -0.5919 13 6 6.1032 -3.7262 -0.6123 14 6 5.7020 -3.7823 -2.0638 15 1 5.1610 -2.9592 -2.5067 16 6 6.0200 -4.8873 -2.8246 17 7 6.6785 -5.8898 -2.2852 18 14 5.5158 -4.9603 -4.6218 19 1 6.1359 -3.8283 -5.3563 20 1 5.9738 -6.2434 -5.2126 21 1 4.0373 -4.8670 -4.7253 22 6 6.1335 -2.2954 1.4129 23 6 5.4796 -2.9578 2.4349 24 6 5.9466 -2.8594 3.7323 25 6 7.0622 -2.0915 4.0088 26 6 7.7130 -1.4249 2.9877 27 6 7.2485 -1.5266 1.6897 28 7 2.1750 -1.1396 -0.0052 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8900 0.5140 32 1 1.6882 2.1438 -0.0004 33 1 6.2205 3.1861 0.0000 34 1 3.6563 -3.1967 -0.0006 35 1 5.6478 -4.5592 -0.0768 36 1 7.1884 -3.7927 -0.5324 37 1 6.9019 -6.6673 -2.8204 38 1 4.6055 -3.5544 2.2194 39 1 5.4384 -3.3805 4.5300 40 1 7.4256 -2.0125 5.0228 41 1 8.5849 -0.8252 3.2036 42 1 7.7572 -1.0061 0.8916 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600128274.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:11 Heat of formation + Delta-G solvation = -30.570271 kcal Electronic energy + Delta-G solvation = -27377.822902 eV Core-core repulsion = 23515.122550 eV Total energy + Delta-G solvation = -3862.700352 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.30691 -40.98534 -40.25301 -37.68639 -37.22720 -35.45369 -35.04521 -33.70303 -31.76277 -31.27773 -30.41375 -29.48926 -26.74825 -26.71225 -23.90512 -23.78150 -23.16737 -22.58225 -21.32774 -19.84834 -18.87782 -18.61262 -18.04837 -17.56564 -17.34108 -17.05101 -16.61837 -16.35992 -16.23380 -16.04169 -15.82522 -15.03424 -14.60425 -14.54896 -14.27640 -14.23102 -14.15481 -13.85717 -13.63463 -13.40655 -13.12140 -12.95849 -12.71292 -12.64934 -12.50257 -12.22891 -12.18928 -11.98837 -11.94230 -11.76472 -11.57238 -11.44379 -11.01749 -10.60476 -10.28081 -9.73635 -9.51674 -9.07149 -8.21351 -6.31048 -0.61462 0.13977 0.53173 0.58602 1.34384 1.37792 1.38459 1.46740 1.65727 1.95056 2.38109 2.80814 2.98100 3.02275 3.12551 3.57323 3.76798 3.98517 4.01738 4.06560 4.22197 4.27535 4.33976 4.45917 4.51775 4.66948 4.76540 4.79556 4.81078 4.85596 4.94694 5.15437 5.21976 5.28184 5.31725 5.38363 5.47336 5.63173 5.66064 5.70060 5.76876 5.91151 6.05891 6.16387 6.21324 6.52775 6.80758 6.85164 7.27120 7.37479 8.89141 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.007962 B = 0.005000 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3516.003747 B = 5598.291166 C = 7255.125672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.217 3.783 3 C -0.233 4.233 4 C 0.164 3.836 5 C 0.555 3.445 6 O -0.514 6.514 7 O -0.488 6.488 8 N -0.545 5.545 9 C 0.562 3.438 10 N -0.666 5.666 11 C 0.219 3.781 12 H 0.073 0.927 13 C 0.036 3.964 14 C -0.527 4.527 15 H 0.050 0.950 16 C 0.012 3.988 17 N -0.925 5.925 18 Si 0.953 3.047 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.272 1.272 22 C -0.094 4.094 23 C -0.124 4.124 24 C -0.129 4.129 25 C -0.129 4.129 26 C -0.122 4.122 27 C -0.119 4.119 28 N -0.569 5.569 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.179 0.821 33 H 0.435 0.565 34 H 0.414 0.586 35 H 0.006 0.994 36 H 0.010 0.990 37 H 0.264 0.736 38 H 0.109 0.891 39 H 0.139 0.861 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.936 14.459 10.114 18.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.066 3.934 3 C -0.260 4.260 4 C 0.017 3.983 5 C 0.396 3.604 6 O -0.402 6.402 7 O -0.300 6.300 8 N -0.272 5.272 9 C 0.205 3.795 10 N -0.299 5.299 11 C 0.114 3.886 12 H 0.091 0.909 13 C -0.001 4.001 14 C -0.565 4.565 15 H 0.068 0.932 16 C -0.187 4.187 17 N -0.564 5.564 18 Si 0.779 3.221 19 H -0.198 1.198 20 H -0.206 1.206 21 H -0.197 1.197 22 C -0.095 4.095 23 C -0.143 4.143 24 C -0.147 4.147 25 C -0.147 4.147 26 C -0.140 4.140 27 C -0.138 4.138 28 N -0.294 5.294 29 H 0.120 0.880 30 H 0.104 0.896 31 H 0.130 0.870 32 H 0.197 0.803 33 H 0.297 0.703 34 H 0.251 0.749 35 H 0.025 0.975 36 H 0.029 0.971 37 H 0.073 0.927 38 H 0.127 0.873 39 H 0.157 0.843 40 H 0.166 0.834 41 H 0.163 0.837 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.450 13.330 10.051 17.898 hybrid contribution -0.114 0.382 -1.238 1.300 sum -6.564 13.712 8.814 17.573 Atomic orbital electron populations 1.20952 0.83968 1.05614 1.05161 1.22242 0.99206 0.85909 0.86009 1.22548 0.92786 1.02121 1.08521 1.20400 0.91622 0.89889 0.96436 1.20276 0.81486 0.87008 0.71601 1.90871 1.72883 1.29771 1.46678 1.84699 1.18449 1.43064 1.83823 1.67877 1.40667 0.97532 1.21095 1.19353 0.85069 0.86711 0.88395 1.44289 1.06230 1.03294 1.76056 1.19776 0.77597 0.99710 0.91564 0.90859 1.19150 0.95664 0.90706 0.94579 1.21324 1.36214 1.02839 0.96147 0.93192 1.25741 0.95074 0.95356 1.02506 1.70053 1.40613 1.07735 1.38047 0.85681 0.78751 0.77396 0.80273 1.19827 1.20631 1.19712 1.20426 0.96433 0.97169 0.95491 1.21012 1.00105 0.99688 0.93466 1.21366 0.97548 0.99655 0.96099 1.21433 0.95749 0.97284 1.00233 1.21388 1.00512 0.99982 0.92102 1.21139 0.96257 0.98534 0.97834 1.67769 1.07319 1.32477 1.21862 0.88010 0.89643 0.86953 0.80347 0.70305 0.74877 0.97546 0.97131 0.92706 0.87300 0.84312 0.83351 0.83662 0.86249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.50 10.21 71.24 0.73 -0.77 16 2 C 0.22 5.52 6.83 42.66 0.29 5.82 16 3 C -0.23 -5.85 9.39 22.72 0.21 -5.64 16 4 C 0.16 5.02 6.79 41.96 0.28 5.30 16 5 C 0.55 15.01 8.34 70.53 0.59 15.59 16 6 O -0.51 -14.26 17.20 20.19 0.35 -13.91 16 7 O -0.49 -11.29 13.28 -55.51 -0.74 -12.03 16 8 N -0.54 -19.75 9.01 -187.15 -1.69 -21.44 16 9 C 0.56 20.97 8.39 261.53 2.20 23.17 16 10 N -0.67 -26.34 4.17 -334.08 -1.39 -27.74 16 11 C 0.22 9.24 2.11 44.25 0.09 9.33 16 12 H 0.07 3.33 7.36 -2.39 -0.02 3.31 16 13 C 0.04 1.85 4.50 29.85 0.13 1.98 16 14 C -0.53 -29.07 8.84 25.60 0.23 -28.84 16 15 H 0.05 2.77 7.74 -2.91 -0.02 2.74 16 16 C 0.01 0.67 5.46 84.65 0.46 1.14 16 17 N -0.92 -54.58 13.29 21.45 0.28 -54.29 16 18 Si 0.95 44.26 29.54 68.60 2.03 46.29 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 20 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 22 C -0.09 -3.52 4.93 -19.87 -0.10 -3.62 16 23 C -0.12 -4.31 9.33 22.27 0.21 -4.10 16 24 C -0.13 -3.67 10.05 22.27 0.22 -3.45 16 25 C -0.13 -3.29 10.05 22.27 0.22 -3.07 16 26 C -0.12 -3.34 10.05 22.27 0.22 -3.12 16 27 C -0.12 -4.02 9.67 22.27 0.22 -3.81 16 28 N -0.57 -18.82 10.37 -186.06 -1.93 -20.75 16 29 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.11 1.02 8.10 -2.38 -0.02 1.00 16 32 H 0.18 3.41 7.73 -2.91 -0.02 3.39 16 33 H 0.43 4.87 9.11 -74.06 -0.67 4.19 16 34 H 0.41 16.40 8.72 -92.71 -0.81 15.59 16 35 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 37 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 38 H 0.11 3.79 7.71 -2.91 -0.02 3.77 16 39 H 0.14 3.17 8.06 -2.91 -0.02 3.14 16 40 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 41 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 42 H 0.12 3.94 8.04 -2.91 -0.02 3.92 16 Total: -1.00 -71.76 372.65 2.72 -69.05 By element: Atomic # 1 Polarization: 29.32 SS G_CDS: -0.41 Total: 28.91 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 6.21 Total: 5.92 kcal Atomic # 7 Polarization: -119.49 SS G_CDS: -4.72 Total: -124.22 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.39 Total: -25.94 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -71.76 2.72 -69.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600128274.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.476 kcal (2) G-P(sol) polarization free energy of solvation -71.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds