Wall clock time and date at job start Tue Mar 31 2020 16:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.46829 * 2 1 4 4 N 1.31795 * 119.02036 * 90.00114 * 3 2 1 5 5 C 1.33055 * 120.91567 * 179.97438 * 4 3 2 6 6 N 1.38571 * 120.49311 * 179.97438 * 5 4 3 7 7 C 1.40555 * 120.00291 * 354.44040 * 6 5 4 8 8 C 1.40664 * 126.08024 * 6.28860 * 7 6 5 9 9 N 1.30914 * 108.39392 * 179.97438 * 8 7 6 10 10 N 1.40068 * 108.40528 * 359.97438 * 9 8 7 11 11 C 1.37316 * 126.07156 * 180.02562 * 10 9 8 12 12 H 1.07991 * 120.00200 * 179.97438 * 11 10 9 13 13 C 1.38981 * 119.99745 * 359.97438 * 11 10 9 14 14 N 1.31302 * 119.99933 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00011 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47077 * 90.00156 * 15 13 11 17 17 H 1.48498 * 109.47258 * 210.00136 * 15 13 11 18 18 H 1.48500 * 109.47094 * 330.00213 * 15 13 11 19 19 C 1.35679 * 126.08147 * 185.97777 * 7 6 5 20 20 C 1.39490 * 119.01093 * 0.02562 * 5 4 3 21 21 C 1.39183 * 118.22271 * 359.97438 * 20 5 4 22 22 C 1.48420 * 120.50630 * 180.02562 * 21 20 5 23 23 N 1.34058 * 126.67674 * 0.02562 * 22 21 20 24 24 N 1.28986 * 107.26675 * 180.02562 * 23 22 21 25 25 N 1.28724 * 108.95042 * 0.02562 * 24 23 22 26 26 H 0.97000 * 125.34483 * 179.97438 * 25 24 23 27 27 N 1.28874 * 109.31845 * 359.72840 * 25 24 23 28 28 N 1.31635 * 119.01354 * 269.73079 * 3 2 1 29 29 H 1.08995 * 109.47294 * 60.00652 * 1 2 3 30 30 H 1.09007 * 109.46724 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47321 * 299.99806 * 1 2 3 32 32 H 1.09004 * 109.47119 * 119.99907 * 2 1 3 33 33 H 1.08994 * 109.47398 * 239.99711 * 2 1 3 34 34 H 0.97004 * 120.00169 * 174.43544 * 6 5 4 35 35 H 1.08002 * 125.80579 * 359.97438 * 8 7 6 36 36 H 0.97002 * 120.00214 * 180.02562 * 14 13 11 37 37 H 1.07998 * 126.24628 * 0.02562 * 19 7 6 38 38 H 1.08002 * 120.89189 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2454 2.0236 1.1525 5 6 2.6891 3.2773 1.1965 6 7 2.9096 3.9028 2.4131 7 6 2.5551 3.2568 3.6100 8 6 2.0871 1.9358 3.7313 9 7 1.8636 1.6914 4.9978 10 7 2.1792 2.8413 5.7326 11 6 2.0789 2.9833 7.0947 12 1 2.3503 3.9185 7.5616 13 6 1.6281 1.9234 7.8725 14 7 1.2986 0.7862 7.3049 15 14 1.4924 2.1162 9.7255 16 1 0.1399 2.6217 10.0728 17 1 1.7114 0.8002 10.3775 18 1 2.5178 3.0802 10.1993 19 6 2.6089 3.7945 4.8546 20 6 2.9278 3.9528 -0.0004 21 6 2.6898 3.2795 -1.1950 22 6 2.9273 3.9496 -2.4978 23 7 3.3706 5.2007 -2.6856 24 7 3.4391 5.3956 -3.9589 25 7 3.0592 4.3262 -4.5664 26 1 3.0178 4.2122 -5.5288 27 7 2.7473 3.4290 -3.6955 28 7 2.2501 2.0210 -1.1511 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.3088 4.7865 2.4389 35 1 1.9376 1.2413 2.9178 36 1 0.9837 0.0465 7.8476 37 1 2.9309 4.7946 5.1047 38 1 3.2878 4.9710 -0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604571222.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:05 Heat of formation + Delta-G solvation = 267.844137 kcal Electronic energy + Delta-G solvation = -26147.452940 eV Core-core repulsion = 22258.737967 eV Total energy + Delta-G solvation = -3888.714973 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.66405 -40.80594 -39.44324 -36.11725 -35.04100 -34.23971 -33.50508 -32.76088 -31.83078 -30.43604 -30.01014 -27.57413 -25.70371 -25.12214 -24.53446 -24.27053 -22.22038 -21.65555 -20.39583 -19.80578 -19.22543 -17.93322 -17.44958 -17.35405 -16.32559 -15.55562 -15.53402 -15.13370 -14.97859 -14.43869 -14.30266 -13.97128 -13.70383 -13.65598 -13.45132 -12.86991 -12.54712 -12.38576 -12.09918 -11.70149 -11.59894 -11.53865 -11.34032 -11.33725 -11.25356 -10.94372 -10.88085 -10.86421 -10.54679 -10.32320 -9.63923 -9.36928 -8.87219 -8.74688 -8.65683 -8.05482 -6.58273 -6.56239 -4.22859 0.57785 1.01025 1.43667 2.00137 2.30560 2.95420 3.03664 3.08818 3.17953 3.42425 3.55850 3.83114 3.89783 4.07638 4.38889 4.43695 4.67691 4.85150 5.00360 5.08303 5.12811 5.34604 5.36206 5.46598 5.50404 5.65835 5.82682 6.03752 6.13309 6.20659 6.25055 6.29885 6.41519 6.56349 6.83519 6.94490 7.13798 7.20184 7.65519 7.87285 7.92116 8.03185 8.27880 8.59044 8.71696 9.35449 9.65485 10.37864 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.023622 B = 0.002622 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.066868 B =10678.239155 C =11760.760633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.054 4.054 3 C 0.369 3.631 4 N -0.547 5.547 5 C 0.444 3.556 6 N -0.591 5.591 7 C -0.060 4.060 8 C -0.029 4.029 9 N -0.262 5.262 10 N -0.143 5.143 11 C -0.322 4.322 12 H 0.116 0.884 13 C 0.046 3.954 14 N -0.769 5.769 15 Si 0.934 3.066 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.264 1.264 19 C -0.084 4.084 20 C -0.257 4.257 21 C 0.270 3.730 22 C 0.227 3.773 23 N -0.255 5.255 24 N -0.053 5.053 25 N -0.230 5.230 26 H 0.476 0.524 27 N -0.256 5.256 28 N -0.548 5.548 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.412 0.588 35 H 0.188 0.812 36 H 0.275 0.725 37 H 0.145 0.855 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.898 3.864 -17.523 18.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.093 4.093 3 C 0.099 3.901 4 N -0.273 5.273 5 C 0.197 3.803 6 N -0.211 5.211 7 C -0.166 4.166 8 C -0.205 4.205 9 N -0.092 5.092 10 N 0.091 4.909 11 C -0.454 4.454 12 H 0.133 0.867 13 C -0.171 4.171 14 N -0.395 5.395 15 Si 0.758 3.242 16 H -0.196 1.196 17 H -0.201 1.201 18 H -0.188 1.188 19 C -0.236 4.236 20 C -0.290 4.290 21 C 0.126 3.874 22 C -0.055 4.055 23 N -0.130 5.130 24 N -0.048 5.048 25 N -0.076 5.076 26 H 0.330 0.670 27 N -0.108 5.108 28 N -0.269 5.269 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.249 0.751 35 H 0.204 0.796 36 H 0.085 0.915 37 H 0.162 0.838 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.250 2.285 -16.773 16.974 hybrid contribution 0.631 1.772 -0.140 1.887 sum 1.881 4.057 -16.913 17.495 Atomic orbital electron populations 1.21674 0.93641 1.02280 1.02515 1.20347 0.96749 0.88020 1.04153 1.22878 0.88774 0.96462 0.81940 1.67995 1.20917 1.09071 1.29303 1.18210 0.88318 0.88261 0.85519 1.41122 1.60576 1.18412 1.00957 1.17283 1.20051 0.95492 0.83751 1.24423 1.05343 0.94974 0.95781 1.78266 1.24341 1.05268 1.01306 1.44562 1.34644 1.06489 1.05243 1.19865 1.46449 1.01449 0.77635 0.86685 1.25627 0.95483 0.94669 1.01292 1.70212 1.31180 1.01773 1.36383 0.85838 0.79294 0.78546 0.80552 1.19594 1.20072 1.18826 1.21228 1.16578 0.96868 0.88906 1.21742 1.12828 1.03273 0.91112 1.17443 0.94000 0.89671 0.86310 1.23112 1.01305 0.89280 0.91777 1.76099 1.16639 1.14495 1.05730 1.78924 1.14535 1.10824 1.00502 1.47865 1.41035 1.06239 1.12497 0.66976 1.75173 1.19123 1.17585 0.98920 1.68016 1.19667 1.08759 1.30503 0.92617 0.91675 0.91866 0.88821 0.89375 0.75145 0.79604 0.91469 0.83773 0.83379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.89 37.16 0.37 -1.37 16 2 C -0.05 -0.70 6.37 -27.88 -0.18 -0.88 16 3 C 0.37 5.95 6.90 -157.33 -1.08 4.86 16 4 N -0.55 -9.92 6.55 -10.00 -0.07 -9.99 16 5 C 0.44 7.62 7.47 -154.74 -1.16 6.46 16 6 N -0.59 -10.29 5.60 -10.00 -0.06 -10.35 16 7 C -0.06 -1.31 6.91 -83.85 -0.58 -1.89 16 8 C -0.03 -0.70 10.86 -17.03 -0.18 -0.89 16 9 N -0.26 -7.29 10.40 30.81 0.32 -6.97 16 10 N -0.14 -3.81 3.74 -11.41 -0.04 -3.85 16 11 C -0.32 -8.35 10.25 -14.82 -0.15 -8.50 16 12 H 0.12 2.68 7.83 -52.49 -0.41 2.27 16 13 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 14 N -0.77 -20.96 11.81 55.49 0.66 -20.30 16 15 Si 0.93 18.63 29.55 -169.99 -5.02 13.61 16 16 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 17 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 18 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 19 C -0.08 -1.93 11.50 -16.37 -0.19 -2.12 16 20 C -0.26 -3.81 9.70 -38.76 -0.38 -4.19 16 21 C 0.27 4.12 6.79 -82.65 -0.56 3.55 16 22 C 0.23 3.12 8.06 -156.30 -1.26 1.86 16 23 N -0.26 -3.34 12.30 32.15 0.40 -2.94 16 24 N -0.05 -0.56 13.47 60.35 0.81 0.25 16 25 N -0.23 -1.89 7.90 60.35 0.48 -1.41 16 26 H 0.48 1.39 8.96 -340.37 -3.05 -1.66 16 27 N -0.26 -3.05 12.40 32.17 0.40 -2.65 16 28 N -0.55 -8.71 10.29 -7.36 -0.08 -8.78 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.41 5.71 8.84 -40.82 -0.36 5.35 16 35 H 0.19 4.30 5.64 -52.49 -0.30 4.00 16 36 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 37 H 0.14 2.78 8.06 -52.49 -0.42 2.36 16 38 H 0.15 1.85 7.96 -52.49 -0.42 1.44 16 LS Contribution 341.83 15.07 5.15 5.15 Total: -1.00 -33.59 341.83 -8.71 -42.30 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -6.21 Total: 7.96 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -5.45 Total: -2.02 kcal Atomic # 7 Polarization: -69.81 SS G_CDS: 2.82 Total: -66.99 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.02 Total: 13.61 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.59 -8.71 -42.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604571222.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 310.145 kcal (2) G-P(sol) polarization free energy of solvation -33.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 276.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 267.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds