Wall clock time and date at job start Tue Mar 31 2020 16:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.46829 * 2 1 4 4 N 1.31795 * 119.02036 * 90.00114 * 3 2 1 5 5 C 1.33055 * 120.91567 * 179.97438 * 4 3 2 6 6 N 1.38571 * 120.49311 * 179.97438 * 5 4 3 7 7 C 1.40555 * 120.00291 * 354.44040 * 6 5 4 8 8 C 1.40664 * 126.08024 * 6.28860 * 7 6 5 9 9 N 1.30914 * 108.39392 * 179.97438 * 8 7 6 10 10 N 1.40068 * 108.40528 * 359.97438 * 9 8 7 11 11 C 1.37316 * 126.07156 * 180.02562 * 10 9 8 12 12 H 1.07991 * 120.00200 * 179.97438 * 11 10 9 13 13 C 1.38981 * 119.99745 * 359.97438 * 11 10 9 14 14 N 1.31302 * 119.99933 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00011 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47077 * 90.00156 * 15 13 11 17 17 H 1.48498 * 109.47258 * 210.00136 * 15 13 11 18 18 H 1.48500 * 109.47094 * 330.00213 * 15 13 11 19 19 C 1.35679 * 126.08147 * 185.97777 * 7 6 5 20 20 C 1.39490 * 119.01093 * 0.02562 * 5 4 3 21 21 C 1.39183 * 118.22271 * 359.97438 * 20 5 4 22 22 C 1.48420 * 120.50630 * 180.02562 * 21 20 5 23 23 N 1.34058 * 126.67674 * 0.02562 * 22 21 20 24 24 N 1.28986 * 107.26675 * 180.02562 * 23 22 21 25 25 N 1.28724 * 108.95042 * 0.02562 * 24 23 22 26 26 H 0.97000 * 125.34483 * 179.97438 * 25 24 23 27 27 N 1.28874 * 109.31845 * 359.72840 * 25 24 23 28 28 N 1.31635 * 119.01354 * 269.73079 * 3 2 1 29 29 H 1.08995 * 109.47294 * 60.00652 * 1 2 3 30 30 H 1.09007 * 109.46724 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47321 * 299.99806 * 1 2 3 32 32 H 1.09004 * 109.47119 * 119.99907 * 2 1 3 33 33 H 1.08994 * 109.47398 * 239.99711 * 2 1 3 34 34 H 0.97004 * 120.00169 * 174.43544 * 6 5 4 35 35 H 1.08002 * 125.80579 * 359.97438 * 8 7 6 36 36 H 0.97002 * 120.00214 * 180.02562 * 14 13 11 37 37 H 1.07998 * 126.24628 * 0.02562 * 19 7 6 38 38 H 1.08002 * 120.89189 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2454 2.0236 1.1525 5 6 2.6891 3.2773 1.1965 6 7 2.9096 3.9028 2.4131 7 6 2.5551 3.2568 3.6100 8 6 2.0871 1.9358 3.7313 9 7 1.8636 1.6914 4.9978 10 7 2.1792 2.8413 5.7326 11 6 2.0789 2.9833 7.0947 12 1 2.3503 3.9185 7.5616 13 6 1.6281 1.9234 7.8725 14 7 1.2986 0.7862 7.3049 15 14 1.4924 2.1162 9.7255 16 1 0.1399 2.6217 10.0728 17 1 1.7114 0.8002 10.3775 18 1 2.5178 3.0802 10.1993 19 6 2.6089 3.7945 4.8546 20 6 2.9278 3.9528 -0.0004 21 6 2.6898 3.2795 -1.1950 22 6 2.9273 3.9496 -2.4978 23 7 3.3706 5.2007 -2.6856 24 7 3.4391 5.3956 -3.9589 25 7 3.0592 4.3262 -4.5664 26 1 3.0178 4.2122 -5.5288 27 7 2.7473 3.4290 -3.6955 28 7 2.2501 2.0210 -1.1511 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.3088 4.7865 2.4389 35 1 1.9376 1.2413 2.9178 36 1 0.9837 0.0465 7.8476 37 1 2.9309 4.7946 5.1047 38 1 3.2878 4.9710 -0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604571222.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:04 Heat of formation + Delta-G solvation = 244.932672 kcal Electronic energy + Delta-G solvation = -26148.446456 eV Core-core repulsion = 22258.737967 eV Total energy + Delta-G solvation = -3889.708489 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.56836 -42.13270 -41.22219 -37.54137 -36.08696 -35.28582 -35.19053 -33.88810 -33.09682 -32.19372 -31.39439 -29.24372 -27.15969 -26.18426 -26.05125 -25.28254 -23.52788 -22.87531 -22.02875 -21.43883 -20.21226 -19.57759 -18.71863 -18.24842 -17.82015 -17.35060 -16.89496 -16.44304 -16.27191 -15.86093 -15.43120 -15.29404 -15.22473 -15.00863 -14.74371 -14.53572 -13.69039 -13.46203 -13.42659 -13.28073 -13.12826 -12.81871 -12.79870 -12.53852 -12.45476 -12.27862 -12.07785 -12.01005 -11.91101 -11.57578 -11.25242 -10.74852 -10.71066 -10.15559 -10.11260 -9.95246 -8.42531 -8.23972 -6.15974 -0.53000 0.08718 0.16262 1.17793 1.28516 1.36448 1.41722 1.58355 1.82778 1.96525 2.19444 2.27576 2.48884 2.84367 2.90633 2.91470 3.13414 3.35121 3.61891 3.82610 4.04148 4.26037 4.36501 4.38028 4.45531 4.47402 4.52743 4.66772 4.78643 5.03220 5.06168 5.12895 5.17890 5.26727 5.36446 5.43082 5.56340 5.82407 5.95569 6.13868 6.49197 6.66263 6.87544 7.02182 7.33418 7.52163 7.77109 8.56689 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.023622 B = 0.002622 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.066868 B =10678.239155 C =11760.760633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.053 4.053 3 C 0.360 3.640 4 N -0.576 5.576 5 C 0.433 3.567 6 N -0.590 5.590 7 C -0.040 4.040 8 C -0.047 4.047 9 N -0.310 5.310 10 N -0.172 5.172 11 C -0.354 4.354 12 H 0.135 0.865 13 C -0.005 4.005 14 N -0.822 5.822 15 Si 1.015 2.985 16 H -0.266 1.266 17 H -0.276 1.276 18 H -0.248 1.248 19 C -0.086 4.086 20 C -0.244 4.244 21 C 0.265 3.735 22 C 0.209 3.791 23 N -0.270 5.270 24 N -0.048 5.048 25 N -0.196 5.196 26 H 0.497 0.503 27 N -0.260 5.260 28 N -0.547 5.547 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.038 0.962 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.430 0.570 35 H 0.193 0.807 36 H 0.275 0.725 37 H 0.180 0.820 38 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.446 5.316 -19.097 19.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.092 4.092 3 C 0.091 3.909 4 N -0.302 5.302 5 C 0.187 3.813 6 N -0.215 5.215 7 C -0.147 4.147 8 C -0.223 4.223 9 N -0.140 5.140 10 N 0.059 4.941 11 C -0.485 4.485 12 H 0.152 0.848 13 C -0.216 4.216 14 N -0.450 5.450 15 Si 0.834 3.166 16 H -0.190 1.190 17 H -0.201 1.201 18 H -0.171 1.171 19 C -0.236 4.236 20 C -0.275 4.275 21 C 0.121 3.879 22 C -0.072 4.072 23 N -0.144 5.144 24 N -0.043 5.043 25 N -0.047 5.047 26 H 0.357 0.643 27 N -0.113 5.113 28 N -0.268 5.268 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.057 0.943 32 H 0.107 0.893 33 H 0.127 0.873 34 H 0.269 0.731 35 H 0.209 0.791 36 H 0.085 0.915 37 H 0.197 0.803 38 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 1.816 3.776 -18.427 18.897 hybrid contribution 0.501 1.378 -0.084 1.468 sum 2.317 5.154 -18.511 19.354 Atomic orbital electron populations 1.21622 0.92955 1.03478 1.01323 1.20467 0.97216 0.86618 1.04908 1.23367 0.88577 0.97435 0.81523 1.67933 1.21642 1.09973 1.30648 1.18470 0.88417 0.88357 0.86045 1.40941 1.61781 1.19127 0.99607 1.17296 1.17738 0.94499 0.85180 1.24668 1.05960 0.96519 0.95185 1.78149 1.25950 1.07180 1.02767 1.44798 1.36431 1.06933 1.05923 1.20500 1.47369 1.02677 0.77980 0.84771 1.26772 0.94407 0.93915 1.06525 1.70381 1.33254 1.02945 1.38437 0.84651 0.79659 0.78600 0.73677 1.19046 1.20134 1.17076 1.21903 1.15226 0.97760 0.88759 1.21873 1.11666 1.04060 0.89929 1.17734 0.93313 0.89511 0.87374 1.22858 1.02875 0.89767 0.91660 1.76092 1.17239 1.14309 1.06771 1.78876 1.14402 1.11127 0.99899 1.47902 1.38638 1.04888 1.13313 0.64268 1.75116 1.19074 1.18292 0.98866 1.68089 1.19285 1.09201 1.30213 0.92403 0.89332 0.94297 0.89290 0.87302 0.73088 0.79054 0.91480 0.80288 0.80954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.89 71.98 0.71 -2.53 16 2 C -0.05 -1.36 6.37 29.85 0.19 -1.17 16 3 C 0.36 11.46 6.90 138.80 0.96 12.42 16 4 N -0.58 -20.95 6.55 -185.56 -1.22 -22.17 16 5 C 0.43 14.55 7.47 133.10 0.99 15.54 16 6 N -0.59 -20.02 5.60 -185.55 -1.04 -21.06 16 7 C -0.04 -1.78 6.91 37.74 0.26 -1.52 16 8 C -0.05 -2.36 10.86 85.42 0.93 -1.43 16 9 N -0.31 -17.96 10.40 -56.45 -0.59 -18.55 16 10 N -0.17 -9.42 3.74 -190.00 -0.71 -10.13 16 11 C -0.35 -18.70 10.25 84.01 0.86 -17.83 16 12 H 0.13 6.22 7.83 -2.92 -0.02 6.20 16 13 C 0.00 -0.24 5.50 84.95 0.47 0.23 16 14 N -0.82 -46.70 11.81 21.66 0.26 -46.44 16 15 Si 1.01 38.56 29.55 68.60 2.03 40.59 16 16 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 17 H -0.28 -10.37 7.11 99.48 0.71 -9.66 16 18 H -0.25 -8.62 7.11 99.48 0.71 -7.91 16 19 C -0.09 -3.92 11.50 83.37 0.96 -2.96 16 20 C -0.24 -6.85 9.70 22.80 0.22 -6.63 16 21 C 0.26 7.68 6.79 41.85 0.28 7.97 16 22 C 0.21 5.33 8.06 137.36 1.11 6.44 16 23 N -0.27 -6.45 12.30 -52.20 -0.64 -7.09 16 24 N -0.05 -0.90 13.47 37.02 0.50 -0.40 16 25 N -0.20 -2.64 7.90 37.02 0.29 -2.35 16 26 H 0.50 1.27 8.96 -347.54 -3.12 -1.84 16 27 N -0.26 -5.55 12.40 -52.15 -0.65 -6.20 16 28 N -0.55 -16.74 10.29 -177.21 -1.82 -18.57 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 33 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.43 11.14 8.84 -92.71 -0.82 10.32 16 35 H 0.19 9.23 5.64 -2.91 -0.02 9.21 16 36 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16 37 H 0.18 6.62 8.06 -2.91 -0.02 6.59 16 38 H 0.17 3.90 7.96 -2.91 -0.02 3.88 16 Total: -1.00 -75.35 341.83 1.58 -73.77 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: -2.77 Total: 30.08 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 7.94 Total: 8.51 kcal Atomic # 7 Polarization: -147.33 SS G_CDS: -5.62 Total: -152.95 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Total: -75.35 1.58 -73.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604571222.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 318.700 kcal (2) G-P(sol) polarization free energy of solvation -75.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 243.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 244.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds