Wall clock time and date at job start Tue Mar 31 2020 14:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38234 * 120.41685 * 2 1 4 4 N 1.31857 * 120.76081 * 179.97438 * 3 2 1 5 5 C 1.31886 * 121.72680 * 0.02562 * 4 3 2 6 6 C 1.38179 * 120.76686 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.41945 * 180.02562 * 6 5 4 8 8 N 1.46503 * 109.47316 * 269.98343 * 7 6 5 9 9 C 1.34772 * 119.99908 * 179.97438 * 8 7 6 10 10 O 1.21593 * 119.99944 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99800 * 179.97438 * 9 8 7 12 12 C 1.40032 * 120.00042 * 175.49502 * 11 9 8 13 13 C 1.38905 * 120.00278 * 214.85281 * 12 11 9 14 14 C 1.38006 * 120.00045 * 179.80817 * 13 12 11 15 15 C 1.38900 * 120.00086 * 0.44742 * 14 13 12 16 16 O 1.35781 * 120.00004 * 179.76516 * 15 14 13 17 17 C 1.34817 * 116.99824 * 185.36631 * 16 15 14 18 18 H 1.07991 * 120.00467 * 354.95991 * 17 16 15 19 19 C 1.38633 * 119.99927 * 174.96300 * 17 16 15 20 20 N 1.31578 * 119.99765 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00061 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47055 * 90.00159 * 21 19 17 23 23 H 1.48503 * 109.47141 * 209.99842 * 21 19 17 24 24 H 1.48498 * 109.47290 * 330.00490 * 21 19 17 25 25 C 1.38906 * 120.00339 * 359.78508 * 15 14 13 26 26 C 1.38009 * 119.99863 * 0.02562 * 25 15 14 27 27 C 1.38631 * 120.42296 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.47191 * 89.99956 * 1 2 3 29 29 H 1.09004 * 109.47418 * 209.99852 * 1 2 3 30 30 H 1.09002 * 109.47548 * 329.99983 * 1 2 3 31 31 H 1.08000 * 119.61749 * 359.95753 * 3 2 1 32 32 H 1.07998 * 119.61185 * 179.97438 * 5 4 3 33 33 H 1.09009 * 109.46881 * 29.98152 * 7 6 5 34 34 H 1.09006 * 109.47283 * 149.97711 * 7 6 5 35 35 H 0.96995 * 119.99765 * 359.97438 * 8 7 6 36 36 H 0.96995 * 120.00043 * 355.49734 * 11 9 8 37 37 H 1.08002 * 119.99828 * 0.02562 * 13 12 11 38 38 H 1.07999 * 120.00106 * 180.18624 * 14 13 12 39 39 H 0.97006 * 119.99608 * 180.02562 * 20 19 17 40 40 H 1.07990 * 120.00222 * 179.97438 * 25 15 14 41 41 H 1.08001 * 120.00137 * 179.97438 * 26 25 15 42 42 H 1.08000 * 120.78756 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.1921 0.0000 4 7 3.5254 1.2000 0.0005 5 6 4.2256 0.0824 0.0005 6 6 3.5948 -1.1470 0.0005 7 6 4.4027 -2.4191 0.0012 8 7 4.6647 -2.8319 -1.3799 9 6 5.3756 -3.9503 -1.6256 10 8 5.7990 -4.6169 -0.7010 11 7 5.6162 -4.3303 -2.8961 12 6 6.4332 -5.4382 -3.1527 13 6 7.2604 -5.4476 -4.2685 14 6 8.0686 -6.5378 -4.5192 15 6 8.0479 -7.6297 -3.6609 16 8 8.8395 -8.7043 -3.9102 17 6 8.6910 -9.7741 -3.1033 18 1 8.0269 -9.7215 -2.2534 19 6 9.3911 -10.9419 -3.3647 20 7 10.2007 -11.0058 -4.3999 21 14 9.1859 -12.4240 -2.2464 22 1 8.0745 -13.2720 -2.7473 23 1 10.4439 -13.2130 -2.2344 24 1 8.8761 -11.9653 -0.8684 25 6 7.2172 -7.6224 -2.5476 26 6 6.4119 -6.5306 -2.2947 27 6 2.2089 -1.1954 0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6674 2.1277 -0.0007 32 1 5.3046 0.1287 0.0005 33 1 5.3487 -2.2484 0.5151 34 1 3.8461 -3.2028 0.5153 35 1 4.3266 -2.3003 -2.1174 36 1 5.2234 -3.8363 -3.6327 37 1 7.2738 -4.6002 -4.9380 38 1 8.7140 -6.5438 -5.3851 39 1 10.6903 -11.8230 -4.5829 40 1 7.2008 -8.4715 -1.8806 41 1 5.7656 -6.5250 -1.4294 42 1 1.6888 -2.1419 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645635671.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:31 Heat of formation + Delta-G solvation = 9.405097 kcal Electronic energy + Delta-G solvation = -25421.922553 eV Core-core repulsion = 21560.955663 eV Total energy + Delta-G solvation = -3860.966890 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.89391 -40.19479 -38.74053 -36.76375 -35.35292 -34.08271 -33.96541 -32.37878 -32.00267 -30.15542 -28.16181 -27.80118 -26.45483 -25.17391 -23.60086 -22.44054 -21.83032 -21.40046 -20.49608 -18.58673 -17.90919 -17.52608 -17.28733 -17.14398 -16.50921 -15.49551 -15.26763 -14.96980 -14.61049 -14.47000 -14.30962 -14.02776 -13.59667 -13.56173 -13.52566 -13.49381 -13.20669 -13.19127 -12.87348 -12.83275 -12.52586 -11.90178 -11.70308 -11.53842 -11.48350 -10.99249 -10.74165 -10.41207 -10.29481 -9.95834 -9.89651 -9.66613 -9.35276 -9.24322 -9.15578 -8.65533 -8.16286 -6.88774 -6.41090 -3.98579 0.51922 0.77070 2.17840 2.28391 2.70519 3.15205 3.17356 3.22244 3.30733 3.35985 3.92115 4.00815 4.20055 4.25681 4.27413 4.47753 4.50993 4.61832 4.67597 4.94407 5.05559 5.13113 5.19840 5.29803 5.30094 5.41825 5.50321 5.70843 5.71470 5.77820 5.79195 6.16180 6.18385 6.20532 6.24552 6.36650 6.68008 6.77368 6.99272 7.13724 7.21278 7.37102 7.48356 7.49763 7.82686 8.02092 8.04923 8.65481 9.04895 9.74808 10.76945 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.029182 B = 0.001862 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.253710 B =15030.821419 C =15478.456975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.140 4.140 3 C 0.103 3.897 4 N -0.482 5.482 5 C 0.112 3.888 6 C -0.153 4.153 7 C 0.186 3.814 8 N -0.746 5.746 9 C 0.700 3.300 10 O -0.574 6.574 11 N -0.674 5.674 12 C 0.052 3.948 13 C -0.095 4.095 14 C -0.178 4.178 15 C 0.145 3.855 16 O -0.178 6.178 17 C -0.389 4.389 18 H 0.092 0.908 19 C 0.038 3.962 20 N -0.864 5.864 21 Si 0.940 3.060 22 H -0.274 1.274 23 H -0.278 1.278 24 H -0.267 1.267 25 C -0.220 4.220 26 C -0.064 4.064 27 C -0.058 4.058 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.155 0.845 32 H 0.158 0.842 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.395 0.605 36 H 0.397 0.603 37 H 0.114 0.886 38 H 0.121 0.879 39 H 0.269 0.731 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.637 21.932 6.334 29.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.142 4.142 3 C -0.055 4.055 4 N -0.189 5.189 5 C -0.045 4.045 6 C -0.155 4.155 7 C 0.061 3.939 8 N -0.403 5.403 9 C 0.400 3.600 10 O -0.450 6.450 11 N -0.321 5.321 12 C -0.041 4.041 13 C -0.115 4.115 14 C -0.198 4.198 15 C 0.091 3.909 16 O -0.081 6.081 17 C -0.466 4.466 18 H 0.110 0.890 19 C -0.166 4.166 20 N -0.499 5.499 21 Si 0.765 3.235 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.240 4.240 26 C -0.084 4.084 27 C -0.084 4.084 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.173 0.827 32 H 0.175 0.825 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.228 0.772 36 H 0.231 0.769 37 H 0.132 0.868 38 H 0.139 0.861 39 H 0.079 0.921 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.446 21.913 6.956 28.861 hybrid contribution -0.927 -0.968 -0.115 1.345 sum -18.373 20.945 6.842 28.689 Atomic orbital electron populations 1.20742 0.89949 1.03344 1.02821 1.20985 0.97809 0.94037 1.01379 1.22774 0.90000 0.97605 0.95101 1.67759 1.08325 1.31094 1.11763 1.22787 1.00574 0.86948 0.94209 1.20941 0.94605 0.96444 1.03548 1.19897 0.99079 0.91987 0.82915 1.45115 1.59777 1.27193 1.08243 1.15931 0.79320 0.81024 0.83685 1.90948 1.55971 1.54922 1.43161 1.42276 1.52115 1.31764 1.05936 1.17033 0.99244 0.87817 0.99999 1.20322 0.95839 0.97956 0.97417 1.19968 1.04509 0.93640 1.01657 1.19409 0.89853 0.88993 0.92622 1.83975 1.51365 1.20318 1.52487 1.21330 1.28048 0.89032 1.08175 0.89039 1.25278 0.95821 0.98177 0.97293 1.70052 1.25506 1.27967 1.26367 0.85717 0.78088 0.80098 0.79580 1.19920 1.20302 1.19160 1.21111 1.02080 1.00320 1.00453 1.20881 0.98399 0.90724 0.98412 1.21506 0.93292 0.98544 0.95066 0.90712 0.91131 0.91030 0.82730 0.82462 0.90177 0.90421 0.77178 0.76874 0.86822 0.86081 0.92095 0.85237 0.85572 0.84517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.39 10.04 36.00 0.36 -0.03 16 2 C -0.14 -0.84 5.90 -104.48 -0.62 -1.45 16 3 C 0.10 0.71 10.86 -17.54 -0.19 0.52 16 4 N -0.48 -4.32 10.36 -13.25 -0.14 -4.45 16 5 C 0.11 0.90 10.86 -17.55 -0.19 0.71 16 6 C -0.15 -1.12 5.27 -104.49 -0.55 -1.67 16 7 C 0.19 1.61 5.82 -5.19 -0.03 1.58 16 8 N -0.75 -7.11 5.55 -66.41 -0.37 -7.47 16 9 C 0.70 9.92 8.41 -86.92 -0.73 9.19 16 10 O -0.57 -10.68 13.78 5.28 0.07 -10.61 16 11 N -0.67 -9.15 5.35 -14.18 -0.08 -9.23 16 12 C 0.05 0.93 6.30 -83.61 -0.53 0.40 16 13 C -0.09 -1.66 9.96 -39.42 -0.39 -2.05 16 14 C -0.18 -3.73 9.98 -39.42 -0.39 -4.12 16 15 C 0.15 3.56 6.65 -39.09 -0.26 3.30 16 16 O -0.18 -5.13 9.76 -0.01 0.00 -5.13 16 17 C -0.39 -11.04 9.48 30.88 0.29 -10.75 16 18 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 19 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 20 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 21 Si 0.94 20.86 29.55 -169.99 -5.02 15.84 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 25 C -0.22 -5.02 9.16 -39.42 -0.36 -5.39 16 26 C -0.06 -1.31 8.69 -39.41 -0.34 -1.65 16 27 C -0.06 -0.37 9.55 -39.28 -0.37 -0.75 16 28 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 0.22 8.10 -51.93 -0.42 -0.20 16 30 H 0.07 0.18 8.09 -51.93 -0.42 -0.24 16 31 H 0.16 0.71 8.06 -52.49 -0.42 0.29 16 32 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.08 0.75 8.09 -51.92 -0.42 0.33 16 34 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.39 2.76 8.48 -40.82 -0.35 2.41 16 36 H 0.40 3.84 8.84 -40.82 -0.36 3.48 16 37 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.12 2.41 8.06 -52.49 -0.42 1.98 16 39 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.13 2.98 5.63 -52.49 -0.30 2.69 16 41 H 0.13 2.57 6.22 -52.49 -0.33 2.25 16 42 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 365.25 15.07 5.50 5.50 Total: -1.00 -35.05 365.25 -8.63 -43.67 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -4.95 Total: 7.82 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -4.40 Total: -11.20 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: 0.18 Total: -45.91 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: 0.07 Total: -15.73 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.05 -8.63 -43.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645635671.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.077 kcal (2) G-P(sol) polarization free energy of solvation -35.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds