Wall clock time and date at job start Tue Mar 31 2020 14:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38234 * 120.41685 * 2 1 4 4 N 1.31857 * 120.76081 * 179.97438 * 3 2 1 5 5 C 1.31886 * 121.72680 * 0.02562 * 4 3 2 6 6 C 1.38179 * 120.76686 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.41945 * 180.02562 * 6 5 4 8 8 N 1.46503 * 109.47316 * 269.98343 * 7 6 5 9 9 C 1.34772 * 119.99908 * 179.97438 * 8 7 6 10 10 O 1.21593 * 119.99944 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99800 * 179.97438 * 9 8 7 12 12 C 1.40032 * 120.00042 * 175.49502 * 11 9 8 13 13 C 1.38905 * 120.00278 * 214.85281 * 12 11 9 14 14 C 1.38006 * 120.00045 * 179.80817 * 13 12 11 15 15 C 1.38900 * 120.00086 * 0.44742 * 14 13 12 16 16 O 1.35781 * 120.00004 * 179.76516 * 15 14 13 17 17 C 1.34817 * 116.99824 * 185.36631 * 16 15 14 18 18 H 1.07991 * 120.00467 * 354.95991 * 17 16 15 19 19 C 1.38633 * 119.99927 * 174.96300 * 17 16 15 20 20 N 1.31578 * 119.99765 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00061 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47055 * 90.00159 * 21 19 17 23 23 H 1.48503 * 109.47141 * 209.99842 * 21 19 17 24 24 H 1.48498 * 109.47290 * 330.00490 * 21 19 17 25 25 C 1.38906 * 120.00339 * 359.78508 * 15 14 13 26 26 C 1.38009 * 119.99863 * 0.02562 * 25 15 14 27 27 C 1.38631 * 120.42296 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.47191 * 89.99956 * 1 2 3 29 29 H 1.09004 * 109.47418 * 209.99852 * 1 2 3 30 30 H 1.09002 * 109.47548 * 329.99983 * 1 2 3 31 31 H 1.08000 * 119.61749 * 359.95753 * 3 2 1 32 32 H 1.07998 * 119.61185 * 179.97438 * 5 4 3 33 33 H 1.09009 * 109.46881 * 29.98152 * 7 6 5 34 34 H 1.09006 * 109.47283 * 149.97711 * 7 6 5 35 35 H 0.96995 * 119.99765 * 359.97438 * 8 7 6 36 36 H 0.96995 * 120.00043 * 355.49734 * 11 9 8 37 37 H 1.08002 * 119.99828 * 0.02562 * 13 12 11 38 38 H 1.07999 * 120.00106 * 180.18624 * 14 13 12 39 39 H 0.97006 * 119.99608 * 180.02562 * 20 19 17 40 40 H 1.07990 * 120.00222 * 179.97438 * 25 15 14 41 41 H 1.08001 * 120.00137 * 179.97438 * 26 25 15 42 42 H 1.08000 * 120.78756 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.1921 0.0000 4 7 3.5254 1.2000 0.0005 5 6 4.2256 0.0824 0.0005 6 6 3.5948 -1.1470 0.0005 7 6 4.4027 -2.4191 0.0012 8 7 4.6647 -2.8319 -1.3799 9 6 5.3756 -3.9503 -1.6256 10 8 5.7990 -4.6169 -0.7010 11 7 5.6162 -4.3303 -2.8961 12 6 6.4332 -5.4382 -3.1527 13 6 7.2604 -5.4476 -4.2685 14 6 8.0686 -6.5378 -4.5192 15 6 8.0479 -7.6297 -3.6609 16 8 8.8395 -8.7043 -3.9102 17 6 8.6910 -9.7741 -3.1033 18 1 8.0269 -9.7215 -2.2534 19 6 9.3911 -10.9419 -3.3647 20 7 10.2007 -11.0058 -4.3999 21 14 9.1859 -12.4240 -2.2464 22 1 8.0745 -13.2720 -2.7473 23 1 10.4439 -13.2130 -2.2344 24 1 8.8761 -11.9653 -0.8684 25 6 7.2172 -7.6224 -2.5476 26 6 6.4119 -6.5306 -2.2947 27 6 2.2089 -1.1954 0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6674 2.1277 -0.0007 32 1 5.3046 0.1287 0.0005 33 1 5.3487 -2.2484 0.5151 34 1 3.8461 -3.2028 0.5153 35 1 4.3266 -2.3003 -2.1174 36 1 5.2234 -3.8363 -3.6327 37 1 7.2738 -4.6002 -4.9380 38 1 8.7140 -6.5438 -5.3851 39 1 10.6903 -11.8230 -4.5829 40 1 7.2008 -8.4715 -1.8806 41 1 5.7656 -6.5250 -1.4294 42 1 1.6888 -2.1419 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645635671.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:30 Heat of formation + Delta-G solvation = -15.115365 kcal Electronic energy + Delta-G solvation = -25422.985840 eV Core-core repulsion = 21560.955663 eV Total energy + Delta-G solvation = -3862.030177 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.72506 -41.21735 -40.40458 -38.34557 -36.33303 -35.39648 -34.53670 -34.16863 -32.98889 -31.82035 -29.59403 -28.20582 -27.56135 -26.95669 -24.21180 -23.92231 -23.21664 -22.13541 -21.81647 -20.07559 -19.47206 -18.94334 -18.17934 -17.88066 -17.70288 -16.65950 -16.45139 -16.19469 -16.09205 -15.61524 -15.44729 -15.26795 -15.15015 -14.76785 -14.61571 -14.26320 -14.09953 -14.00223 -13.95346 -13.57370 -13.54385 -13.24121 -13.19199 -13.15896 -12.68402 -12.43800 -12.39140 -12.12434 -11.51444 -11.32949 -10.96269 -10.69612 -10.54097 -10.46575 -10.14276 -9.85456 -9.80421 -8.56015 -8.45300 -6.11814 -0.02647 0.25683 0.55310 0.62175 1.35713 1.44027 1.52763 1.66733 2.09613 2.19251 2.76622 2.85021 3.17352 3.29697 3.40102 3.54638 3.67658 3.79401 3.99163 4.01146 4.12210 4.15812 4.23738 4.43359 4.50949 4.63028 4.69097 4.75393 4.78040 4.84360 4.88682 5.08605 5.16098 5.18904 5.24328 5.29851 5.32262 5.39097 5.44816 5.63958 5.72616 5.73281 5.98031 6.04699 6.21835 6.96176 6.99451 7.02512 7.52566 7.79496 8.77394 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.029182 B = 0.001862 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.253710 B =15030.821419 C =15478.456975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.137 4.137 3 C 0.094 3.906 4 N -0.509 5.509 5 C 0.101 3.899 6 C -0.151 4.151 7 C 0.189 3.811 8 N -0.722 5.722 9 C 0.699 3.301 10 O -0.619 6.619 11 N -0.661 5.661 12 C 0.082 3.918 13 C -0.079 4.079 14 C -0.179 4.179 15 C 0.104 3.896 16 O -0.228 6.228 17 C -0.412 4.412 18 H 0.097 0.903 19 C -0.022 4.022 20 N -0.918 5.918 21 Si 1.016 2.984 22 H -0.262 1.262 23 H -0.269 1.269 24 H -0.258 1.258 25 C -0.228 4.228 26 C -0.076 4.076 27 C -0.061 4.061 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.175 0.825 32 H 0.162 0.838 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.412 0.588 36 H 0.422 0.578 37 H 0.166 0.834 38 H 0.128 0.872 39 H 0.273 0.727 40 H 0.116 0.884 41 H 0.127 0.873 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.305 24.327 6.612 33.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.139 4.139 3 C -0.063 4.063 4 N -0.217 5.217 5 C -0.056 4.056 6 C -0.153 4.153 7 C 0.065 3.935 8 N -0.379 5.379 9 C 0.399 3.601 10 O -0.498 6.498 11 N -0.311 5.311 12 C -0.013 4.013 13 C -0.099 4.099 14 C -0.199 4.199 15 C 0.054 3.946 16 O -0.135 6.135 17 C -0.489 4.489 18 H 0.114 0.886 19 C -0.219 4.219 20 N -0.556 5.556 21 Si 0.836 3.164 22 H -0.187 1.187 23 H -0.194 1.194 24 H -0.181 1.181 25 C -0.248 4.248 26 C -0.096 4.096 27 C -0.087 4.087 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.192 0.808 32 H 0.179 0.821 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.248 0.752 36 H 0.260 0.740 37 H 0.184 0.816 38 H 0.146 0.854 39 H 0.082 0.918 40 H 0.134 0.866 41 H 0.145 0.855 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -20.194 24.426 7.216 32.504 hybrid contribution -0.342 -1.290 -0.166 1.344 sum -20.536 23.136 7.050 31.729 Atomic orbital electron populations 1.20801 0.88069 1.04240 1.03606 1.21242 0.99120 0.93404 1.00089 1.23190 0.89604 0.98971 0.94562 1.67762 1.09475 1.31622 1.12840 1.22893 1.00958 0.87107 0.94647 1.20716 0.94838 0.95327 1.04421 1.19887 0.99010 0.92575 0.82052 1.44913 1.57970 1.25584 1.09422 1.16083 0.79312 0.81623 0.83064 1.90938 1.57781 1.56600 1.44521 1.42067 1.51467 1.30632 1.06933 1.17132 0.97925 0.87753 0.98466 1.20736 0.93563 0.98027 0.97548 1.20304 1.04961 0.93438 1.01207 1.19938 0.90980 0.89346 0.94359 1.83936 1.54013 1.21632 1.53928 1.21760 1.28619 0.89793 1.08698 0.88565 1.26524 0.95214 1.01169 0.99001 1.70184 1.27432 1.29151 1.28867 0.84622 0.78536 0.75730 0.77549 1.18683 1.19400 1.18137 1.21097 1.02690 1.00945 1.00077 1.20950 0.98334 0.91039 0.99276 1.21731 0.92984 0.99474 0.94526 0.89847 0.90567 0.89884 0.80809 0.82090 0.90889 0.90664 0.75197 0.73951 0.81645 0.85369 0.91845 0.86647 0.85534 0.83173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.44 10.04 71.23 0.72 0.28 16 2 C -0.14 -1.27 5.90 -19.77 -0.12 -1.39 16 3 C 0.09 1.10 10.86 84.69 0.92 2.02 16 4 N -0.51 -8.34 10.36 -195.84 -2.03 -10.37 16 5 C 0.10 1.47 10.86 84.67 0.92 2.39 16 6 C -0.15 -1.89 5.27 -19.78 -0.10 -2.00 16 7 C 0.19 2.92 5.82 85.63 0.50 3.42 16 8 N -0.72 -11.67 5.55 -482.28 -2.68 -14.35 16 9 C 0.70 17.98 8.41 179.06 1.51 19.48 16 10 O -0.62 -22.23 13.78 -4.01 -0.06 -22.29 16 11 N -0.66 -15.53 5.35 -317.04 -1.69 -17.22 16 12 C 0.08 2.70 6.30 38.15 0.24 2.94 16 13 C -0.08 -2.50 9.96 22.37 0.22 -2.28 16 14 C -0.18 -7.42 9.98 22.37 0.22 -7.19 16 15 C 0.10 5.30 6.65 22.59 0.15 5.45 16 16 O -0.23 -13.93 9.76 -22.95 -0.22 -14.16 16 17 C -0.41 -24.66 9.48 67.91 0.64 -24.01 16 18 H 0.10 5.39 5.20 -2.92 -0.02 5.38 16 19 C -0.02 -1.25 5.49 84.83 0.47 -0.78 16 20 N -0.92 -56.81 13.67 21.61 0.30 -56.51 16 21 Si 1.02 44.04 29.55 68.60 2.03 46.07 16 22 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 24 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 25 C -0.23 -10.78 9.16 22.38 0.20 -10.57 16 26 C -0.08 -3.06 8.69 22.38 0.19 -2.86 16 27 C -0.06 -0.63 9.55 22.47 0.21 -0.42 16 28 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.08 0.25 8.10 -2.38 -0.02 0.23 16 30 H 0.08 0.16 8.09 -2.39 -0.02 0.14 16 31 H 0.17 1.18 8.06 -2.91 -0.02 1.15 16 32 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 33 H 0.07 1.28 8.09 -2.38 -0.02 1.26 16 34 H 0.08 1.25 8.10 -2.38 -0.02 1.23 16 35 H 0.41 4.20 8.48 -92.71 -0.79 3.41 16 36 H 0.42 6.04 8.84 -92.71 -0.82 5.22 16 37 H 0.17 3.61 8.06 -2.91 -0.02 3.59 16 38 H 0.13 5.05 8.06 -2.91 -0.02 5.03 16 39 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 40 H 0.12 5.64 5.63 -2.92 -0.02 5.62 16 41 H 0.13 5.14 6.22 -2.91 -0.02 5.12 16 42 H 0.15 1.12 8.06 -2.91 -0.02 1.09 16 Total: -1.00 -81.37 365.25 2.02 -79.35 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: -0.52 Total: 25.01 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: 6.90 Total: -15.53 kcal Atomic # 7 Polarization: -92.35 SS G_CDS: -6.11 Total: -98.46 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -0.28 Total: -36.45 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -81.37 2.02 -79.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645635671.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.233 kcal (2) G-P(sol) polarization free energy of solvation -81.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds