Wall clock time and date at job start Tue Mar 31 2020 14:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38550 * 120.01727 * 2 1 4 4 C 1.40073 * 117.81599 * 179.97438 * 3 2 1 5 5 C 1.48137 * 121.14336 * 179.97438 * 4 3 2 6 6 O 1.21520 * 119.99815 * 183.60771 * 5 4 3 7 7 N 1.34776 * 119.99930 * 3.60290 * 5 4 3 8 8 C 1.46501 * 119.99918 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47128 * 180.02562 * 8 7 5 10 10 C 1.38326 * 119.96518 * 269.72016 * 9 8 7 11 11 C 1.38282 * 120.13331 * 179.76648 * 10 9 8 12 12 C 1.38118 * 120.07033 * 0.51138 * 11 10 9 13 13 C 1.38854 * 119.93476 * 359.74827 * 12 11 10 14 14 O 1.35745 * 120.07158 * 179.97438 * 13 12 11 15 15 C 1.34830 * 117.00170 * 5.93140 * 14 13 12 16 16 H 1.08002 * 119.99516 * 354.90161 * 15 14 13 17 17 C 1.38655 * 120.00041 * 174.89405 * 15 14 13 18 18 N 1.31557 * 119.99892 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99704 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.46944 * 90.00595 * 19 17 15 21 21 H 1.48503 * 109.46720 * 210.00209 * 19 17 15 22 22 H 1.48497 * 109.47278 * 330.00175 * 19 17 15 23 23 C 1.38081 * 119.96593 * 90.00287 * 9 8 7 24 24 C 1.39764 * 117.71072 * 359.97438 * 4 3 2 25 25 C 1.50703 * 120.17465 * 180.02562 * 24 4 3 26 26 N 1.31896 * 119.65388 * 0.28368 * 24 4 3 27 27 N 1.28279 * 122.32752 * 359.41145 * 26 24 4 28 28 H 1.09005 * 109.46883 * 90.00561 * 1 2 3 29 29 H 1.09004 * 109.47654 * 210.00160 * 1 2 3 30 30 H 1.08999 * 109.47155 * 330.00721 * 1 2 3 31 31 H 1.07994 * 121.08853 * 359.94956 * 3 2 1 32 32 H 0.96997 * 120.00283 * 0.02562 * 7 5 4 33 33 H 1.08998 * 109.47355 * 299.99988 * 8 7 5 34 34 H 1.09004 * 109.47515 * 59.99903 * 8 7 5 35 35 H 1.07997 * 119.92731 * 0.02562 * 10 9 8 36 36 H 1.07999 * 119.96192 * 180.26096 * 11 10 9 37 37 H 1.08003 * 120.03186 * 179.72090 * 12 11 10 38 38 H 0.97003 * 119.99585 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.03165 * 359.95408 * 23 9 8 40 40 H 1.08995 * 109.46869 * 83.18994 * 25 24 4 41 41 H 1.09000 * 109.47259 * 203.19807 * 25 24 4 42 42 H 1.09005 * 109.46694 * 323.19516 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2001 1.1997 0.0000 4 6 3.5998 1.1459 0.0006 5 6 4.4140 2.3834 0.0000 6 8 5.6254 2.3135 -0.0657 7 7 3.8113 3.5867 0.0723 8 6 4.6165 4.8105 0.0713 9 6 3.7081 6.0096 0.1602 10 6 3.2329 6.6036 -0.9952 11 6 2.3952 7.7011 -0.9176 12 6 2.0390 8.2140 0.3143 13 6 2.5187 7.6234 1.4758 14 8 2.1707 8.1256 2.6880 15 6 1.2607 9.1203 2.7002 16 1 0.9049 9.5381 1.7700 17 6 0.7814 9.6068 3.9070 18 7 1.2151 9.0981 5.0400 19 14 -0.4800 10.9845 3.9237 20 1 -1.8467 10.4045 3.8992 21 1 -0.3091 11.7970 5.1549 22 1 -0.2868 11.8471 2.7305 23 6 3.3557 6.5179 1.3947 24 6 4.2017 -0.1155 0.0016 25 6 5.7037 -0.2381 0.0028 26 7 3.4482 -1.1981 -0.0036 27 7 2.1667 -1.1420 0.0014 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 1.6782 2.1452 -0.0008 32 1 2.8443 3.6424 0.1251 33 1 5.2914 4.8022 0.9271 34 1 5.1979 4.8622 -0.8493 35 1 3.5133 6.2067 -1.9596 36 1 2.0224 8.1600 -1.8213 37 1 1.3883 9.0740 0.3741 38 1 0.8800 9.4387 5.8842 39 1 3.7301 6.0560 2.2963 40 1 6.0749 -0.1457 1.0235 41 1 5.9893 -1.2093 -0.4013 42 1 6.1332 0.5522 -0.6129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645672438.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:19 Heat of formation + Delta-G solvation = -3.527499 kcal Electronic energy + Delta-G solvation = -26077.960845 eV Core-core repulsion = 22216.433156 eV Total energy + Delta-G solvation = -3861.527689 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.50575 -40.99823 -40.44932 -38.49346 -36.23111 -35.34173 -34.73850 -34.27570 -32.36382 -30.97310 -30.54545 -27.90773 -27.71127 -27.08049 -25.73523 -23.82197 -23.25213 -22.43857 -21.89907 -19.77817 -19.08329 -18.84683 -18.40473 -17.00766 -16.87470 -16.80979 -16.70785 -16.46164 -16.11573 -15.85946 -15.70002 -15.49446 -14.98982 -14.65300 -14.42343 -14.33602 -14.27463 -13.92443 -13.70764 -13.54056 -13.38358 -13.29776 -13.09967 -12.98020 -12.54554 -12.37452 -12.26842 -12.12197 -12.10955 -11.52373 -11.40534 -11.21400 -10.81462 -10.64127 -10.57014 -10.23611 -9.76466 -9.03121 -8.46966 -6.15294 -0.84532 -0.27715 0.36038 0.71074 1.36511 1.44628 1.53200 1.56165 1.91992 2.17644 2.41111 2.82521 2.83960 3.10960 3.17784 3.26166 3.37609 3.52765 3.63175 3.83356 4.05117 4.10033 4.19471 4.31215 4.41068 4.42403 4.52703 4.64652 4.68117 4.73836 4.74514 4.75445 4.80859 5.01701 5.07485 5.09503 5.12416 5.25556 5.26313 5.36596 5.62516 5.70497 5.72420 6.01768 6.16346 6.28299 6.91861 6.98291 7.52112 7.78465 8.75953 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014725 B = 0.002525 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.033696 B =11088.582881 C =11880.296400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.058 3.942 3 C -0.067 4.067 4 C -0.140 4.140 5 C 0.566 3.434 6 O -0.544 6.544 7 N -0.701 5.701 8 C 0.174 3.826 9 C -0.061 4.061 10 C -0.166 4.166 11 C -0.070 4.070 12 C -0.234 4.234 13 C 0.112 3.888 14 O -0.232 6.232 15 C -0.411 4.411 16 H 0.104 0.896 17 C -0.022 4.022 18 N -0.921 5.921 19 Si 1.016 2.984 20 H -0.263 1.263 21 H -0.275 1.275 22 H -0.252 1.252 23 C -0.180 4.180 24 C 0.106 3.894 25 C -0.106 4.106 26 N -0.269 5.269 27 N -0.253 5.253 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.187 0.813 32 H 0.412 0.588 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.119 0.881 38 H 0.272 0.728 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.462 -12.365 -14.313 18.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.087 4.087 3 C -0.097 4.097 4 C -0.154 4.154 5 C 0.352 3.648 6 O -0.422 6.422 7 N -0.353 5.353 8 C 0.051 3.949 9 C -0.062 4.062 10 C -0.185 4.185 11 C -0.088 4.088 12 C -0.253 4.253 13 C 0.062 3.938 14 O -0.139 6.139 15 C -0.487 4.487 16 H 0.121 0.879 17 C -0.220 4.220 18 N -0.559 5.559 19 Si 0.835 3.165 20 H -0.188 1.188 21 H -0.200 1.200 22 H -0.176 1.176 23 C -0.199 4.199 24 C -0.040 4.040 25 C -0.164 4.164 26 N -0.110 5.110 27 N -0.095 5.095 28 H 0.121 0.879 29 H 0.103 0.897 30 H 0.122 0.878 31 H 0.205 0.795 32 H 0.249 0.751 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.168 0.832 36 H 0.166 0.834 37 H 0.137 0.863 38 H 0.081 0.919 39 H 0.126 0.874 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.403 -14.091 -13.918 19.810 hybrid contribution -0.806 2.243 0.760 2.502 sum -0.403 -11.848 -13.158 17.711 Atomic orbital electron populations 1.20875 0.84267 1.05528 1.05238 1.23432 1.00997 0.89256 0.94995 1.22966 0.92579 1.01844 0.92271 1.21071 0.95166 0.94947 1.04179 1.17911 0.87051 0.83048 0.76787 1.90725 1.14305 1.86709 1.50500 1.45896 1.11587 1.04583 1.73187 1.20168 0.91568 0.79394 1.03726 1.19408 0.98165 0.96672 0.91906 1.21015 1.01254 0.98209 0.98010 1.21161 0.95832 0.95414 0.96347 1.21385 1.06980 1.04048 0.92895 1.19864 0.94587 0.93265 0.86104 1.83947 1.55126 1.48946 1.25898 1.21805 1.19334 1.12296 0.95270 0.87886 1.26545 1.00352 1.01587 0.93485 1.70182 1.44046 1.43338 0.98308 0.84618 0.76844 0.76168 0.78835 1.18765 1.19981 1.17558 1.20241 1.03756 0.97594 0.98356 1.23346 1.00295 0.88736 0.91594 1.21024 0.85764 1.04906 1.04667 1.73013 0.99526 1.27084 1.11416 1.72731 1.01801 1.26630 1.08356 0.87928 0.89718 0.87808 0.79546 0.75058 0.91032 0.88485 0.83206 0.83446 0.86316 0.91919 0.87372 0.89547 0.89702 0.87684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 10.19 71.23 0.73 -0.30 16 2 C 0.06 1.04 6.86 42.62 0.29 1.34 16 3 C -0.07 -1.08 9.35 22.79 0.21 -0.87 16 4 C -0.14 -2.94 5.92 -19.83 -0.12 -3.05 16 5 C 0.57 12.71 7.77 86.87 0.68 13.39 16 6 O -0.54 -14.77 13.42 -3.78 -0.05 -14.82 16 7 N -0.70 -13.89 5.51 -469.42 -2.59 -16.48 16 8 C 0.17 3.91 5.80 85.63 0.50 4.40 16 9 C -0.06 -1.67 5.25 -19.88 -0.10 -1.77 16 10 C -0.17 -4.06 9.70 22.30 0.22 -3.84 16 11 C -0.07 -1.96 10.04 22.25 0.22 -1.74 16 12 C -0.23 -8.94 9.17 22.39 0.21 -8.74 16 13 C 0.11 5.04 6.65 22.58 0.15 5.19 16 14 O -0.23 -13.16 9.76 -22.68 -0.22 -13.38 16 15 C -0.41 -22.63 9.49 67.92 0.64 -21.99 16 16 H 0.10 5.14 5.21 -2.91 -0.02 5.13 16 17 C -0.02 -1.20 5.49 84.83 0.47 -0.74 16 18 N -0.92 -54.76 13.67 21.61 0.30 -54.46 16 19 Si 1.02 40.90 29.55 68.60 2.03 42.93 16 20 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 21 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 22 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 23 C -0.18 -6.70 9.65 22.39 0.22 -6.48 16 24 C 0.11 2.51 6.91 42.92 0.30 2.81 16 25 C -0.11 -2.20 9.11 71.24 0.65 -1.55 16 26 N -0.27 -7.10 11.42 -46.94 -0.54 -7.63 16 27 N -0.25 -6.19 11.40 -47.69 -0.54 -6.74 16 28 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.10 0.67 8.09 -2.39 -0.02 0.65 16 31 H 0.19 1.70 6.63 -2.91 -0.02 1.68 16 32 H 0.41 6.67 6.66 -92.71 -0.62 6.05 16 33 H 0.07 1.77 8.08 -2.39 -0.02 1.75 16 34 H 0.10 1.91 8.08 -2.39 -0.02 1.89 16 35 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 36 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 37 H 0.12 4.70 5.64 -2.91 -0.02 4.68 16 38 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 39 H 0.11 4.17 8.06 -2.91 -0.02 4.15 16 40 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.10 2.32 5.69 -2.38 -0.01 2.31 16 Total: -1.00 -73.77 362.52 4.10 -69.67 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 0.46 Total: 24.87 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: 5.25 Total: -23.95 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -3.37 Total: -85.31 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.27 Total: -28.20 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -73.77 4.10 -69.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645672438.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.147 kcal (2) G-P(sol) polarization free energy of solvation -73.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds