Wall clock time and date at job start Tue Mar 31 2020 15:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31812 * 119.12501 * 2 1 4 4 C 1.32316 * 120.81660 * 180.02562 * 3 2 1 5 5 C 1.38616 * 119.10883 * 0.02562 * 4 3 2 6 6 C 1.38572 * 118.39811 * 359.97438 * 5 4 3 7 7 C 1.50706 * 120.44974 * 180.02562 * 6 5 4 8 8 C 1.52993 * 109.47135 * 125.00499 * 7 6 5 9 9 C 1.50706 * 109.47136 * 180.02562 * 8 7 6 10 10 O 1.21289 * 119.99563 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00051 * 180.02562 * 9 8 7 12 12 C 1.39989 * 119.99966 * 175.48853 * 11 9 8 13 13 C 1.38920 * 120.00366 * 214.84789 * 12 11 9 14 14 C 1.37998 * 120.00182 * 179.76510 * 13 12 11 15 15 C 1.38915 * 119.99932 * 0.48079 * 14 13 12 16 16 O 1.35776 * 119.99728 * 179.74471 * 15 14 13 17 17 C 1.34814 * 116.99729 * 185.36653 * 16 15 14 18 18 H 1.07999 * 120.00096 * 354.96738 * 17 16 15 19 19 C 1.38631 * 119.99874 * 174.96580 * 17 16 15 20 20 N 1.31581 * 120.00061 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00040 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47432 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47571 * 120.00328 * 21 19 17 24 24 H 1.48503 * 109.46844 * 239.99965 * 21 19 17 25 25 C 1.38906 * 120.00155 * 359.77120 * 15 14 13 26 26 C 1.38005 * 120.00339 * 359.97438 * 25 15 14 27 27 N 1.31791 * 119.12394 * 180.29773 * 2 1 3 28 28 H 1.08998 * 109.47415 * 89.99903 * 1 2 3 29 29 H 1.09008 * 109.46943 * 210.00253 * 1 2 3 30 30 H 1.09004 * 109.46724 * 329.99791 * 1 2 3 31 31 H 1.08003 * 120.44512 * 180.02562 * 4 3 2 32 32 H 1.07997 * 120.80414 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.46752 * 245.00383 * 7 6 5 34 34 H 1.08994 * 109.46960 * 5.00048 * 7 6 5 35 35 H 1.09000 * 109.47206 * 299.99606 * 8 7 6 36 36 H 1.08994 * 109.47564 * 59.99919 * 8 7 6 37 37 H 0.97003 * 120.00060 * 355.48375 * 11 9 8 38 38 H 1.08003 * 119.99804 * 359.97438 * 13 12 11 39 39 H 1.08000 * 120.00009 * 180.20894 * 14 13 12 40 40 H 0.96999 * 119.99832 * 179.97438 * 20 19 17 41 41 H 1.08003 * 119.99598 * 179.97438 * 25 15 14 42 42 H 1.07993 * 120.00067 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4711 1.1905 -0.0005 5 6 4.1809 -0.0001 -0.0016 6 6 3.4713 -1.1904 -0.0015 7 6 4.1961 -2.5117 -0.0021 8 6 3.7164 -3.3570 1.1794 9 6 4.4417 -4.6781 1.1792 10 8 5.2613 -4.9197 0.3184 11 7 4.1789 -5.5913 2.1349 12 6 4.7817 -6.8536 2.0815 13 6 4.0850 -7.9750 2.5140 14 6 4.6775 -9.2200 2.4569 15 6 5.9742 -9.3507 1.9761 16 8 6.5590 -10.5750 1.9247 17 6 7.8543 -10.6194 1.5538 18 1 8.3562 -9.7176 1.2356 19 6 8.5421 -11.8228 1.5806 20 7 7.9308 -12.9215 1.9687 21 14 10.3371 -11.8843 1.0673 22 1 10.7873 -10.5241 0.6772 23 1 11.1604 -12.3720 2.2029 24 1 10.4905 -12.8060 -0.0870 25 6 6.6728 -8.2288 1.5485 26 6 6.0785 -6.9844 1.6008 27 7 2.1484 -1.1513 -0.0060 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 3.9906 2.1374 -0.0001 32 1 5.2608 -0.0002 -0.0024 33 1 3.9897 -3.0388 -0.9336 34 1 5.2684 -2.3378 0.0871 35 1 3.9228 -2.8299 2.1109 36 1 2.6442 -3.5309 1.0902 37 1 3.5722 -5.3738 2.8598 38 1 3.0784 -7.8728 2.8919 39 1 4.1346 -10.0922 2.7900 40 1 8.4120 -13.7635 1.9872 41 1 7.6812 -8.3305 1.1752 42 1 6.6218 -6.1121 1.2687 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645799857.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:25 Heat of formation + Delta-G solvation = 7.163854 kcal Electronic energy + Delta-G solvation = -25384.077532 eV Core-core repulsion = 21523.013454 eV Total energy + Delta-G solvation = -3861.064077 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.48065 -40.15565 -38.69193 -36.63955 -35.37576 -33.96853 -33.78839 -32.23427 -31.81048 -30.20095 -28.97070 -28.14626 -26.07651 -25.16415 -23.59137 -22.54172 -22.09192 -21.21741 -20.00380 -18.15601 -17.95863 -17.57695 -17.09646 -16.37346 -16.24844 -15.84699 -15.53215 -15.45663 -14.52964 -14.38536 -14.33768 -13.82686 -13.61595 -13.58606 -13.44581 -13.13938 -12.99457 -12.87371 -12.74870 -12.45073 -12.37273 -11.78903 -11.65082 -11.53597 -11.47566 -11.21871 -11.03954 -10.86438 -10.73245 -10.41934 -9.81760 -9.70906 -9.67227 -9.58190 -9.17072 -8.70167 -8.20862 -6.94292 -6.44521 -4.02055 0.51226 0.67728 2.07246 2.21141 2.82078 3.13362 3.15331 3.20768 3.21123 3.37085 3.52006 3.70849 3.97844 4.09570 4.46552 4.56886 4.65997 4.73695 4.81655 4.90271 4.99087 5.08736 5.10955 5.15361 5.25955 5.29280 5.44175 5.51128 5.67308 5.67485 5.74604 5.75569 6.05257 6.14064 6.18187 6.33765 6.65131 6.72685 6.85318 7.00572 7.09449 7.30528 7.44021 7.67368 7.73313 7.78521 8.00803 8.34892 9.01411 9.70860 10.73468 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.028535 B = 0.001869 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.006638 B =14974.840512 C =15751.982241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.319 3.681 3 N -0.527 5.527 4 C 0.153 3.847 5 C -0.232 4.232 6 C 0.185 3.815 7 C -0.057 4.057 8 C -0.129 4.129 9 C 0.506 3.494 10 O -0.528 6.528 11 N -0.660 5.660 12 C 0.032 3.968 13 C -0.093 4.093 14 C -0.178 4.178 15 C 0.146 3.854 16 O -0.177 6.177 17 C -0.390 4.390 18 H 0.093 0.907 19 C 0.038 3.962 20 N -0.863 5.863 21 Si 0.941 3.059 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.221 4.221 26 C -0.064 4.064 27 N -0.517 5.517 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.169 0.831 32 H 0.149 0.851 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.402 0.598 38 H 0.115 0.885 39 H 0.121 0.879 40 H 0.269 0.731 41 H 0.130 0.870 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.825 25.720 -0.710 27.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.052 3.948 3 N -0.242 5.242 4 C -0.013 4.013 5 C -0.254 4.254 6 C 0.039 3.961 7 C -0.095 4.095 8 C -0.169 4.169 9 C 0.293 3.707 10 O -0.404 6.404 11 N -0.305 5.305 12 C -0.060 4.060 13 C -0.113 4.113 14 C -0.198 4.198 15 C 0.092 3.908 16 O -0.080 6.080 17 C -0.466 4.466 18 H 0.110 0.890 19 C -0.166 4.166 20 N -0.498 5.498 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.241 4.241 26 C -0.084 4.084 27 N -0.232 5.232 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.186 0.814 32 H 0.167 0.833 33 H 0.118 0.882 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.123 0.877 37 H 0.236 0.764 38 H 0.133 0.867 39 H 0.139 0.861 40 H 0.079 0.921 41 H 0.148 0.852 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.269 25.091 -1.279 27.535 hybrid contribution 1.601 0.164 0.086 1.612 sum -9.667 25.255 -1.193 27.069 Atomic orbital electron populations 1.20580 0.85652 1.04228 1.03971 1.23304 0.98239 0.83331 0.89969 1.68269 1.10233 1.30546 1.15189 1.23244 0.89670 0.98689 0.89700 1.22813 1.03160 0.94112 1.05325 1.21777 0.89564 0.95929 0.88825 1.20371 0.99398 0.89629 1.00105 1.21518 1.02329 0.93217 0.99885 1.20605 0.83177 0.85788 0.81147 1.90717 1.33711 1.78726 1.37287 1.43216 1.47385 1.12878 1.26977 1.17270 0.93583 0.83635 1.11534 1.20365 0.98187 0.90896 1.01842 1.19998 0.94619 0.96942 1.08260 1.19417 0.92424 0.86043 0.92875 1.83974 1.26241 1.22752 1.75063 1.21386 0.83946 0.96392 1.44884 0.88959 1.25291 1.00171 0.94298 0.96819 1.70059 1.36883 0.99083 1.43740 0.85643 0.80502 0.78875 0.78402 1.19054 1.20155 1.20151 1.21114 1.02089 0.92006 1.08895 1.20844 0.92540 0.97499 0.97507 1.68102 1.09585 1.30538 1.14964 0.89580 0.89479 0.89634 0.81419 0.83298 0.88219 0.88729 0.89103 0.87685 0.76365 0.86732 0.86057 0.92089 0.85207 0.85722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.53 10.32 36.00 0.37 -0.16 16 2 C 0.32 2.97 7.64 -157.18 -1.20 1.77 16 3 N -0.53 -4.93 10.33 -10.72 -0.11 -5.05 16 4 C 0.15 1.11 11.30 -17.20 -0.19 0.92 16 5 C -0.23 -1.68 9.80 -39.32 -0.39 -2.06 16 6 C 0.19 1.67 6.20 -82.24 -0.51 1.16 16 7 C -0.06 -0.51 4.94 -27.88 -0.14 -0.65 16 8 C -0.13 -1.15 5.57 -27.88 -0.16 -1.30 16 9 C 0.51 6.65 7.67 -10.98 -0.08 6.57 16 10 O -0.53 -9.06 13.42 5.55 0.07 -8.99 16 11 N -0.66 -8.65 5.34 -9.82 -0.05 -8.70 16 12 C 0.03 0.56 6.30 -83.63 -0.53 0.03 16 13 C -0.09 -1.61 9.96 -39.42 -0.39 -2.00 16 14 C -0.18 -3.71 9.98 -39.42 -0.39 -4.10 16 15 C 0.15 3.56 6.65 -39.08 -0.26 3.30 16 16 O -0.18 -5.06 9.76 0.01 0.00 -5.06 16 17 C -0.39 -10.97 9.48 30.88 0.29 -10.68 16 18 H 0.09 2.43 5.20 -52.49 -0.27 2.15 16 19 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 20 N -0.86 -25.33 13.67 55.48 0.76 -24.57 16 21 Si 0.94 20.71 29.55 -169.99 -5.02 15.68 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 25 C -0.22 -5.00 9.16 -39.42 -0.36 -5.36 16 26 C -0.06 -1.28 8.69 -39.41 -0.34 -1.62 16 27 N -0.52 -5.17 9.94 -6.99 -0.07 -5.24 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.48 8.14 -51.92 -0.42 0.05 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.17 0.66 8.06 -52.48 -0.42 0.24 16 32 H 0.15 0.71 8.01 -52.49 -0.42 0.29 16 33 H 0.10 1.02 8.10 -51.93 -0.42 0.60 16 34 H 0.09 0.79 7.90 -51.93 -0.41 0.38 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.10 0.88 7.99 -51.93 -0.41 0.46 16 37 H 0.40 3.74 8.82 -40.82 -0.36 3.38 16 38 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 39 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 40 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.13 2.96 5.63 -52.48 -0.30 2.66 16 42 H 0.12 2.44 6.23 -52.49 -0.33 2.12 16 LS Contribution 365.43 15.07 5.51 5.51 Total: -1.00 -35.03 365.43 -8.31 -43.34 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.02 Total: 6.32 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -4.38 Total: -13.23 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 0.53 Total: -43.56 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.07 Total: -14.05 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.03 -8.31 -43.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645799857.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.501 kcal (2) G-P(sol) polarization free energy of solvation -35.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds