Wall clock time and date at job start Tue Mar 31 2020 15:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31812 * 119.12501 * 2 1 4 4 C 1.32316 * 120.81660 * 180.02562 * 3 2 1 5 5 C 1.38616 * 119.10883 * 0.02562 * 4 3 2 6 6 C 1.38572 * 118.39811 * 359.97438 * 5 4 3 7 7 C 1.50706 * 120.44974 * 180.02562 * 6 5 4 8 8 C 1.52993 * 109.47135 * 125.00499 * 7 6 5 9 9 C 1.50706 * 109.47136 * 180.02562 * 8 7 6 10 10 O 1.21289 * 119.99563 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00051 * 180.02562 * 9 8 7 12 12 C 1.39989 * 119.99966 * 175.48853 * 11 9 8 13 13 C 1.38920 * 120.00366 * 214.84789 * 12 11 9 14 14 C 1.37998 * 120.00182 * 179.76510 * 13 12 11 15 15 C 1.38915 * 119.99932 * 0.48079 * 14 13 12 16 16 O 1.35776 * 119.99728 * 179.74471 * 15 14 13 17 17 C 1.34814 * 116.99729 * 185.36653 * 16 15 14 18 18 H 1.07999 * 120.00096 * 354.96738 * 17 16 15 19 19 C 1.38631 * 119.99874 * 174.96580 * 17 16 15 20 20 N 1.31581 * 120.00061 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00040 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47432 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47571 * 120.00328 * 21 19 17 24 24 H 1.48503 * 109.46844 * 239.99965 * 21 19 17 25 25 C 1.38906 * 120.00155 * 359.77120 * 15 14 13 26 26 C 1.38005 * 120.00339 * 359.97438 * 25 15 14 27 27 N 1.31791 * 119.12394 * 180.29773 * 2 1 3 28 28 H 1.08998 * 109.47415 * 89.99903 * 1 2 3 29 29 H 1.09008 * 109.46943 * 210.00253 * 1 2 3 30 30 H 1.09004 * 109.46724 * 329.99791 * 1 2 3 31 31 H 1.08003 * 120.44512 * 180.02562 * 4 3 2 32 32 H 1.07997 * 120.80414 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.46752 * 245.00383 * 7 6 5 34 34 H 1.08994 * 109.46960 * 5.00048 * 7 6 5 35 35 H 1.09000 * 109.47206 * 299.99606 * 8 7 6 36 36 H 1.08994 * 109.47564 * 59.99919 * 8 7 6 37 37 H 0.97003 * 120.00060 * 355.48375 * 11 9 8 38 38 H 1.08003 * 119.99804 * 359.97438 * 13 12 11 39 39 H 1.08000 * 120.00009 * 180.20894 * 14 13 12 40 40 H 0.96999 * 119.99832 * 179.97438 * 20 19 17 41 41 H 1.08003 * 119.99598 * 179.97438 * 25 15 14 42 42 H 1.07993 * 120.00067 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4711 1.1905 -0.0005 5 6 4.1809 -0.0001 -0.0016 6 6 3.4713 -1.1904 -0.0015 7 6 4.1961 -2.5117 -0.0021 8 6 3.7164 -3.3570 1.1794 9 6 4.4417 -4.6781 1.1792 10 8 5.2613 -4.9197 0.3184 11 7 4.1789 -5.5913 2.1349 12 6 4.7817 -6.8536 2.0815 13 6 4.0850 -7.9750 2.5140 14 6 4.6775 -9.2200 2.4569 15 6 5.9742 -9.3507 1.9761 16 8 6.5590 -10.5750 1.9247 17 6 7.8543 -10.6194 1.5538 18 1 8.3562 -9.7176 1.2356 19 6 8.5421 -11.8228 1.5806 20 7 7.9308 -12.9215 1.9687 21 14 10.3371 -11.8843 1.0673 22 1 10.7873 -10.5241 0.6772 23 1 11.1604 -12.3720 2.2029 24 1 10.4905 -12.8060 -0.0870 25 6 6.6728 -8.2288 1.5485 26 6 6.0785 -6.9844 1.6008 27 7 2.1484 -1.1513 -0.0060 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 3.9906 2.1374 -0.0001 32 1 5.2608 -0.0002 -0.0024 33 1 3.9897 -3.0388 -0.9336 34 1 5.2684 -2.3378 0.0871 35 1 3.9228 -2.8299 2.1109 36 1 2.6442 -3.5309 1.0902 37 1 3.5722 -5.3738 2.8598 38 1 3.0784 -7.8728 2.8919 39 1 4.1346 -10.0922 2.7900 40 1 8.4120 -13.7635 1.9872 41 1 7.6812 -8.3305 1.1752 42 1 6.6218 -6.1121 1.2687 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645799857.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:24 Heat of formation + Delta-G solvation = -16.211291 kcal Electronic energy + Delta-G solvation = -25385.091154 eV Core-core repulsion = 21523.013454 eV Total energy + Delta-G solvation = -3862.077700 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.09151 -41.45735 -40.34612 -38.23483 -36.11829 -35.37551 -34.34971 -34.17246 -32.62022 -31.84237 -29.78835 -29.32634 -27.45804 -26.63776 -24.31165 -23.90417 -23.22878 -22.44030 -21.20600 -19.93731 -19.16974 -18.59913 -18.16486 -17.98650 -16.97578 -16.79398 -16.34461 -16.21177 -16.08439 -15.91200 -15.52925 -15.42840 -15.10037 -14.69753 -14.64820 -14.24833 -14.11005 -13.66660 -13.60273 -13.53189 -13.29390 -13.19508 -13.15309 -13.03206 -12.72272 -12.43548 -12.27904 -12.11425 -11.80392 -11.53682 -11.40112 -11.12813 -10.79794 -10.50845 -10.32977 -10.21604 -9.83465 -8.61026 -8.47266 -6.13990 -0.07469 0.08714 0.51328 0.56519 1.34856 1.41490 1.52859 1.66489 2.13735 2.18105 2.74084 2.82058 2.93561 3.14883 3.16980 3.47930 3.52389 3.71660 4.03608 4.07755 4.12609 4.14386 4.18298 4.24204 4.48498 4.49711 4.58108 4.64188 4.66928 4.72963 4.78649 4.85326 4.97678 5.08147 5.09301 5.10039 5.15155 5.35535 5.45712 5.50682 5.60642 5.70492 6.02242 6.06849 6.17407 6.56049 6.97482 7.12929 7.25838 7.77181 8.75669 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.028535 B = 0.001869 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.006638 B =14974.840512 C =15751.982241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.302 3.698 3 N -0.546 5.546 4 C 0.148 3.852 5 C -0.229 4.229 6 C 0.171 3.829 7 C -0.053 4.053 8 C -0.113 4.113 9 C 0.507 3.493 10 O -0.568 6.568 11 N -0.650 5.650 12 C 0.061 3.939 13 C -0.079 4.079 14 C -0.181 4.181 15 C 0.105 3.895 16 O -0.228 6.228 17 C -0.412 4.412 18 H 0.098 0.902 19 C -0.022 4.022 20 N -0.918 5.918 21 Si 1.017 2.983 22 H -0.255 1.255 23 H -0.266 1.266 24 H -0.268 1.268 25 C -0.230 4.230 26 C -0.076 4.076 27 N -0.535 5.535 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.200 0.800 32 H 0.174 0.826 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.426 0.574 38 H 0.166 0.834 39 H 0.127 0.873 40 H 0.273 0.727 41 H 0.116 0.884 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.791 29.041 -0.221 31.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.035 3.965 3 N -0.262 5.262 4 C -0.017 4.017 5 C -0.250 4.250 6 C 0.025 3.975 7 C -0.091 4.091 8 C -0.153 4.153 9 C 0.297 3.703 10 O -0.447 6.447 11 N -0.297 5.297 12 C -0.033 4.033 13 C -0.098 4.098 14 C -0.201 4.201 15 C 0.055 3.945 16 O -0.135 6.135 17 C -0.489 4.489 18 H 0.115 0.885 19 C -0.219 4.219 20 N -0.556 5.556 21 Si 0.837 3.163 22 H -0.179 1.179 23 H -0.191 1.191 24 H -0.193 1.193 25 C -0.250 4.250 26 C -0.096 4.096 27 N -0.251 5.251 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.216 0.784 32 H 0.191 0.809 33 H 0.100 0.900 34 H 0.118 0.882 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.265 0.735 38 H 0.183 0.817 39 H 0.145 0.855 40 H 0.082 0.918 41 H 0.134 0.866 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.295 28.490 -0.764 31.039 hybrid contribution 1.660 -0.503 -0.061 1.735 sum -10.635 27.987 -0.825 29.951 Atomic orbital electron populations 1.20653 0.84127 1.04893 1.04555 1.23797 0.99418 0.83279 0.90045 1.68330 1.11365 1.30670 1.15807 1.23827 0.89234 1.00100 0.88534 1.23085 1.04393 0.93412 1.04136 1.21828 0.89599 0.96349 0.89680 1.20297 0.99797 0.89705 0.99324 1.21472 1.02104 0.90559 1.01186 1.21384 0.82313 0.86673 0.79969 1.90718 1.35584 1.79567 1.38820 1.43195 1.47340 1.11083 1.28083 1.17422 0.92386 0.85798 1.07651 1.20796 0.99917 0.89012 1.00108 1.20332 0.93389 0.98909 1.07489 1.19951 0.94046 0.85572 0.94966 1.83936 1.26690 1.24987 1.77878 1.21808 0.84544 0.97079 1.45437 0.88501 1.26542 1.05186 0.93546 0.96661 1.70188 1.39155 0.99878 1.46407 0.84551 0.74082 0.79387 0.78323 1.17869 1.19079 1.19288 1.21114 1.01776 0.92841 1.09244 1.20950 0.93937 0.96421 0.98268 1.68095 1.10167 1.31041 1.15783 0.88963 0.88919 0.88827 0.78361 0.80888 0.90002 0.88209 0.86315 0.86506 0.73498 0.81656 0.85472 0.91806 0.86599 0.85310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.32 71.23 0.74 -0.17 16 2 C 0.30 5.11 7.64 138.74 1.06 6.17 16 3 N -0.55 -9.16 10.33 -187.84 -1.94 -11.10 16 4 C 0.15 1.77 11.30 84.71 0.96 2.72 16 5 C -0.23 -2.68 9.80 22.44 0.22 -2.46 16 6 C 0.17 2.69 6.20 42.56 0.26 2.95 16 7 C -0.05 -0.83 4.94 29.85 0.15 -0.69 16 8 C -0.11 -1.62 5.57 29.85 0.17 -1.45 16 9 C 0.51 11.80 7.67 87.66 0.67 12.47 16 10 O -0.57 -18.56 13.42 -3.06 -0.04 -18.60 16 11 N -0.65 -14.47 5.34 -303.37 -1.62 -16.09 16 12 C 0.06 1.98 6.30 38.17 0.24 2.22 16 13 C -0.08 -2.48 9.96 22.38 0.22 -2.26 16 14 C -0.18 -7.49 9.98 22.37 0.22 -7.27 16 15 C 0.11 5.32 6.65 22.59 0.15 5.47 16 16 O -0.23 -13.87 9.76 -22.87 -0.22 -14.10 16 17 C -0.41 -24.53 9.48 67.91 0.64 -23.88 16 18 H 0.10 5.40 5.20 -2.91 -0.02 5.38 16 19 C -0.02 -1.25 5.49 84.82 0.47 -0.79 16 20 N -0.92 -56.61 13.67 21.61 0.30 -56.32 16 21 Si 1.02 43.77 29.55 68.60 2.03 45.79 16 22 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 23 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 25 C -0.23 -10.72 9.16 22.37 0.20 -10.52 16 26 C -0.08 -2.98 8.69 22.38 0.19 -2.79 16 27 N -0.54 -9.67 9.94 -176.02 -1.75 -11.43 16 28 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.20 0.91 8.06 -2.91 -0.02 0.89 16 32 H 0.17 1.07 8.01 -2.91 -0.02 1.04 16 33 H 0.08 1.59 8.10 -2.39 -0.02 1.57 16 34 H 0.10 1.45 7.90 -2.39 -0.02 1.43 16 35 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.12 1.50 7.99 -2.39 -0.02 1.48 16 37 H 0.43 5.71 8.82 -92.71 -0.82 4.89 16 38 H 0.17 3.60 8.06 -2.91 -0.02 3.57 16 39 H 0.13 5.02 8.06 -2.91 -0.02 5.00 16 40 H 0.27 15.35 8.31 -92.71 -0.77 14.57 16 41 H 0.12 5.59 5.63 -2.91 -0.02 5.58 16 42 H 0.13 4.98 6.23 -2.91 -0.02 4.96 16 Total: -1.00 -81.83 365.43 3.57 -78.26 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.25 Total: 23.84 kcal Atomic # 6 Polarization: -26.84 SS G_CDS: 6.57 Total: -20.27 kcal Atomic # 7 Polarization: -89.92 SS G_CDS: -5.02 Total: -94.93 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -0.26 Total: -32.69 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -81.83 3.57 -78.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645799857.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.049 kcal (2) G-P(sol) polarization free energy of solvation -81.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds