Wall clock time and date at job start Tue Mar 31 2020 16:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.46936 * 2 1 4 4 N 1.32167 * 120.53848 * 96.12545 * 3 2 1 5 5 C 1.31861 * 120.96448 * 179.97438 * 4 3 2 6 6 N 1.31879 * 122.09920 * 359.97438 * 5 4 3 7 7 C 1.32135 * 120.96673 * 359.97438 * 6 5 4 8 8 C 1.39934 * 120.53963 * 276.39986 * 3 2 1 9 9 C 1.47834 * 120.93717 * 0.02562 * 8 3 2 10 10 O 1.21552 * 119.99857 * 5.94153 * 9 8 3 11 11 N 1.34776 * 120.00062 * 185.94126 * 9 8 3 12 12 C 1.46498 * 119.99673 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.46750 * 180.02562 * 12 11 9 14 14 C 1.38325 * 119.96453 * 269.72386 * 13 12 11 15 15 C 1.38280 * 120.13552 * 179.76771 * 14 13 12 16 16 C 1.38114 * 120.07096 * 0.50984 * 15 14 13 17 17 C 1.38857 * 119.93118 * 359.74663 * 16 15 14 18 18 O 1.35754 * 120.07038 * 179.97438 * 17 16 15 19 19 C 1.34829 * 116.99857 * 5.64195 * 18 17 16 20 20 H 1.07996 * 120.00452 * 354.87189 * 19 18 17 21 21 C 1.38655 * 119.99905 * 174.87970 * 19 18 17 22 22 N 1.31562 * 119.99980 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00151 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47064 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47257 * 119.99452 * 23 21 19 26 26 H 1.48500 * 109.46987 * 239.99476 * 23 21 19 27 27 C 1.38071 * 119.96643 * 90.00449 * 13 12 11 28 28 H 1.08998 * 109.47028 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47491 * 300.00240 * 1 2 3 30 30 H 1.08995 * 109.47088 * 60.00091 * 1 2 3 31 31 H 1.08996 * 109.47491 * 239.99760 * 2 1 3 32 32 H 1.09004 * 109.46909 * 119.99348 * 2 1 3 33 33 H 1.08001 * 118.94917 * 180.02562 * 5 4 3 34 34 H 1.07999 * 120.53996 * 180.02562 * 7 6 5 35 35 H 0.96994 * 119.99847 * 0.02562 * 11 9 8 36 36 H 1.08994 * 109.47557 * 299.99859 * 12 11 9 37 37 H 1.09001 * 109.47243 * 60.00888 * 12 11 9 38 38 H 1.08005 * 119.93255 * 0.02562 * 14 13 12 39 39 H 1.08008 * 119.96648 * 180.25767 * 15 14 13 40 40 H 1.08000 * 120.03614 * 179.76878 * 16 15 14 41 41 H 0.96999 * 120.00259 * 180.02562 * 22 21 19 42 42 H 1.08001 * 120.03579 * 359.95314 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.3706 2.0135 1.1318 5 6 2.8115 3.2561 1.1415 6 7 2.9370 3.9639 0.0358 7 6 2.6225 3.4495 -1.1400 8 6 2.1426 2.1360 -1.1977 9 6 1.7703 1.5189 -2.4885 10 8 1.2608 0.4155 -2.5100 11 7 1.9957 2.1797 -3.6413 12 6 1.6272 1.5678 -4.9203 13 6 1.9822 2.5048 -6.0460 14 6 1.0564 3.4307 -6.4922 15 6 1.3800 4.2953 -7.5217 16 6 2.6256 4.2298 -8.1147 17 6 3.5553 3.2979 -7.6727 18 8 4.7803 3.2307 -8.2539 19 6 5.0736 4.1715 -9.1740 20 1 4.3199 4.8823 -9.4789 21 6 6.3431 4.2265 -9.7290 22 7 7.2615 3.3608 -9.3573 23 14 6.7494 5.5295 -11.0043 24 1 5.5526 6.3742 -11.2475 25 1 7.8622 6.3783 -10.5076 26 1 7.1564 4.8716 -12.2718 27 6 3.2290 2.4342 -6.6349 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.0793 3.7085 2.0850 34 1 2.7283 4.0352 -2.0412 35 1 2.4025 3.0600 -3.6240 36 1 2.1689 0.6302 -5.0441 37 1 0.5549 1.3726 -4.9342 38 1 0.0802 3.4812 -6.0328 39 1 0.6565 5.0200 -7.8651 40 1 2.8765 4.9029 -8.9212 41 1 8.1497 3.3995 -9.7452 42 1 3.9501 1.7086 -6.2886 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647086571.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:47 Heat of formation + Delta-G solvation = 8.057990 kcal Electronic energy + Delta-G solvation = -26184.291399 eV Core-core repulsion = 22323.266095 eV Total energy + Delta-G solvation = -3861.025305 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.63190 -39.66269 -39.02644 -36.93982 -35.58150 -34.45611 -33.27884 -32.39325 -31.59396 -30.48809 -29.19579 -26.57540 -25.48305 -25.25821 -24.74119 -22.18212 -21.79638 -21.13913 -20.89919 -18.42547 -18.14960 -17.55161 -17.20180 -16.83412 -15.81805 -15.79409 -15.26340 -14.97049 -14.61554 -14.42542 -14.41122 -14.35364 -14.14230 -13.74301 -13.58390 -13.43269 -12.82351 -12.74321 -12.49444 -12.28710 -11.94612 -11.76999 -11.73869 -11.46817 -11.19594 -11.00288 -10.91723 -10.88629 -10.76584 -10.50098 -9.97168 -9.90870 -9.60609 -9.46963 -9.14172 -8.94911 -8.33168 -7.40096 -6.54505 -4.14126 0.12837 0.68461 1.79613 2.19268 2.62691 3.03498 3.07618 3.11029 3.13523 3.47306 3.66557 3.72635 3.88094 4.00927 4.36677 4.45281 4.58982 4.81979 4.93211 5.01387 5.03536 5.17850 5.18601 5.24745 5.45353 5.50393 5.64437 5.74886 5.78741 5.80661 5.86972 6.00352 6.01130 6.09288 6.17666 6.31293 6.47591 6.56993 6.73852 6.92917 7.09684 7.20102 7.28306 7.32354 7.63521 7.66933 7.89474 7.97477 8.90921 9.58651 10.63148 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017503 B = 0.002425 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.337010 B =11545.310543 C =12162.603546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.083 4.083 3 C 0.238 3.762 4 N -0.525 5.525 5 C 0.316 3.684 6 N -0.526 5.526 7 C 0.187 3.813 8 C -0.242 4.242 9 C 0.565 3.435 10 O -0.525 6.525 11 N -0.712 5.712 12 C 0.170 3.830 13 C -0.077 4.077 14 C -0.195 4.195 15 C -0.075 4.075 16 C -0.225 4.225 17 C 0.150 3.850 18 O -0.175 6.175 19 C -0.393 4.393 20 H 0.093 0.907 21 C 0.040 3.960 22 N -0.860 5.860 23 Si 0.941 3.059 24 H -0.266 1.266 25 H -0.275 1.275 26 H -0.275 1.275 27 C -0.170 4.170 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.112 0.888 32 H 0.080 0.920 33 H 0.201 0.799 34 H 0.173 0.827 35 H 0.402 0.598 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.128 0.872 41 H 0.271 0.729 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.116 -0.816 15.635 19.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.121 4.121 3 C 0.091 3.909 4 N -0.239 5.239 5 C 0.029 3.971 6 N -0.240 5.240 7 C 0.020 3.980 8 C -0.250 4.250 9 C 0.351 3.649 10 O -0.403 6.403 11 N -0.363 5.363 12 C 0.047 3.953 13 C -0.077 4.077 14 C -0.215 4.215 15 C -0.094 4.094 16 C -0.244 4.244 17 C 0.096 3.904 18 O -0.079 6.079 19 C -0.470 4.470 20 H 0.111 0.889 21 C -0.165 4.165 22 N -0.494 5.494 23 Si 0.766 3.234 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.190 4.190 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.130 0.870 32 H 0.098 0.902 33 H 0.218 0.782 34 H 0.190 0.810 35 H 0.237 0.763 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.146 0.854 41 H 0.081 0.919 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.783 -1.403 16.441 19.712 hybrid contribution 0.318 1.032 -1.518 1.863 sum -10.465 -0.372 14.923 18.231 Atomic orbital electron populations 1.21562 0.93101 1.02564 1.01767 1.20837 0.97466 0.88889 1.04883 1.22041 0.85819 0.96606 0.86423 1.68424 1.13738 1.12135 1.29564 1.25252 0.88244 0.86385 0.97220 1.68468 1.17949 1.38414 0.99124 1.23554 0.86739 0.90993 0.96724 1.21659 1.08835 0.97949 0.96521 1.17727 0.78993 0.85222 0.82979 1.90742 1.43391 1.19219 1.86929 1.46060 1.62928 1.21676 1.05668 1.20214 1.00660 0.95046 0.79340 1.19235 0.94023 0.97444 0.97030 1.20478 0.99240 0.99995 1.01762 1.20752 0.95637 0.97590 0.95388 1.21258 0.94740 1.03603 1.04813 1.19325 0.86699 0.93074 0.91278 1.83983 1.26383 1.48283 1.49206 1.21376 0.97872 1.10288 1.17417 0.88943 1.25309 0.94450 0.98195 0.98509 1.70044 1.03969 1.34202 1.41208 0.85639 0.79004 0.79389 0.79357 1.19065 1.20067 1.20074 1.20089 0.96966 1.03142 0.98835 0.91592 0.93330 0.91752 0.86990 0.90194 0.78221 0.80999 0.76267 0.90445 0.90514 0.87466 0.87240 0.85417 0.91939 0.86365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 9.51 37.16 0.35 -0.92 16 2 C -0.08 -0.86 5.49 -27.89 -0.15 -1.01 16 3 C 0.24 2.69 6.12 -81.81 -0.50 2.19 16 4 N -0.52 -5.73 10.36 -10.48 -0.11 -5.84 16 5 C 0.32 3.02 12.27 -92.02 -1.13 1.89 16 6 N -0.53 -5.59 10.42 -14.24 -0.15 -5.74 16 7 C 0.19 1.89 10.80 -16.77 -0.18 1.71 16 8 C -0.24 -2.70 5.91 -104.69 -0.62 -3.32 16 9 C 0.57 6.88 7.73 -12.33 -0.10 6.78 16 10 O -0.52 -7.33 12.00 5.32 0.06 -7.26 16 11 N -0.71 -8.25 5.50 -62.44 -0.34 -8.60 16 12 C 0.17 2.20 5.80 -5.19 -0.03 2.17 16 13 C -0.08 -1.19 5.25 -104.65 -0.55 -1.74 16 14 C -0.20 -2.96 9.70 -39.53 -0.38 -3.34 16 15 C -0.08 -1.25 10.04 -39.61 -0.40 -1.64 16 16 C -0.22 -4.50 9.17 -39.40 -0.36 -4.86 16 17 C 0.15 3.37 6.65 -39.11 -0.26 3.11 16 18 O -0.18 -4.76 9.76 0.04 0.00 -4.76 16 19 C -0.39 -10.53 9.49 30.89 0.29 -10.24 16 20 H 0.09 2.28 5.20 -52.49 -0.27 2.01 16 21 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 22 N -0.86 -24.49 13.67 55.48 0.76 -23.73 16 23 Si 0.94 19.83 29.55 -169.99 -5.02 14.80 16 24 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 25 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 26 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 27 C -0.17 -3.25 9.64 -39.40 -0.38 -3.63 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.71 6.86 -51.93 -0.36 0.36 16 31 H 0.11 1.28 5.96 -51.93 -0.31 0.97 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.20 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.17 1.35 6.58 -52.49 -0.35 1.00 16 35 H 0.40 4.13 6.63 -40.82 -0.27 3.86 16 36 H 0.08 1.04 8.08 -51.93 -0.42 0.63 16 37 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 38 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 39 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 40 H 0.13 2.59 5.64 -52.49 -0.30 2.29 16 41 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 359.64 15.07 5.42 5.42 Total: -1.00 -31.05 359.64 -8.66 -39.70 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -4.78 Total: 7.89 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -4.49 Total: -11.88 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.16 Total: -43.90 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.06 Total: -12.02 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.05 -8.66 -39.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647086571.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.759 kcal (2) G-P(sol) polarization free energy of solvation -31.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds