Wall clock time and date at job start Tue Mar 31 2020 16:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.46936 * 2 1 4 4 N 1.32167 * 120.53848 * 96.12545 * 3 2 1 5 5 C 1.31861 * 120.96448 * 179.97438 * 4 3 2 6 6 N 1.31879 * 122.09920 * 359.97438 * 5 4 3 7 7 C 1.32135 * 120.96673 * 359.97438 * 6 5 4 8 8 C 1.39934 * 120.53963 * 276.39986 * 3 2 1 9 9 C 1.47834 * 120.93717 * 0.02562 * 8 3 2 10 10 O 1.21552 * 119.99857 * 5.94153 * 9 8 3 11 11 N 1.34776 * 120.00062 * 185.94126 * 9 8 3 12 12 C 1.46498 * 119.99673 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.46750 * 180.02562 * 12 11 9 14 14 C 1.38325 * 119.96453 * 269.72386 * 13 12 11 15 15 C 1.38280 * 120.13552 * 179.76771 * 14 13 12 16 16 C 1.38114 * 120.07096 * 0.50984 * 15 14 13 17 17 C 1.38857 * 119.93118 * 359.74663 * 16 15 14 18 18 O 1.35754 * 120.07038 * 179.97438 * 17 16 15 19 19 C 1.34829 * 116.99857 * 5.64195 * 18 17 16 20 20 H 1.07996 * 120.00452 * 354.87189 * 19 18 17 21 21 C 1.38655 * 119.99905 * 174.87970 * 19 18 17 22 22 N 1.31562 * 119.99980 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00151 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47064 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47257 * 119.99452 * 23 21 19 26 26 H 1.48500 * 109.46987 * 239.99476 * 23 21 19 27 27 C 1.38071 * 119.96643 * 90.00449 * 13 12 11 28 28 H 1.08998 * 109.47028 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47491 * 300.00240 * 1 2 3 30 30 H 1.08995 * 109.47088 * 60.00091 * 1 2 3 31 31 H 1.08996 * 109.47491 * 239.99760 * 2 1 3 32 32 H 1.09004 * 109.46909 * 119.99348 * 2 1 3 33 33 H 1.08001 * 118.94917 * 180.02562 * 5 4 3 34 34 H 1.07999 * 120.53996 * 180.02562 * 7 6 5 35 35 H 0.96994 * 119.99847 * 0.02562 * 11 9 8 36 36 H 1.08994 * 109.47557 * 299.99859 * 12 11 9 37 37 H 1.09001 * 109.47243 * 60.00888 * 12 11 9 38 38 H 1.08005 * 119.93255 * 0.02562 * 14 13 12 39 39 H 1.08008 * 119.96648 * 180.25767 * 15 14 13 40 40 H 1.08000 * 120.03614 * 179.76878 * 16 15 14 41 41 H 0.96999 * 120.00259 * 180.02562 * 22 21 19 42 42 H 1.08001 * 120.03579 * 359.95314 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.3706 2.0135 1.1318 5 6 2.8115 3.2561 1.1415 6 7 2.9370 3.9639 0.0358 7 6 2.6225 3.4495 -1.1400 8 6 2.1426 2.1360 -1.1977 9 6 1.7703 1.5189 -2.4885 10 8 1.2608 0.4155 -2.5100 11 7 1.9957 2.1797 -3.6413 12 6 1.6272 1.5678 -4.9203 13 6 1.9822 2.5048 -6.0460 14 6 1.0564 3.4307 -6.4922 15 6 1.3800 4.2953 -7.5217 16 6 2.6256 4.2298 -8.1147 17 6 3.5553 3.2979 -7.6727 18 8 4.7803 3.2307 -8.2539 19 6 5.0736 4.1715 -9.1740 20 1 4.3199 4.8823 -9.4789 21 6 6.3431 4.2265 -9.7290 22 7 7.2615 3.3608 -9.3573 23 14 6.7494 5.5295 -11.0043 24 1 5.5526 6.3742 -11.2475 25 1 7.8622 6.3783 -10.5076 26 1 7.1564 4.8716 -12.2718 27 6 3.2290 2.4342 -6.6349 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.0793 3.7085 2.0850 34 1 2.7283 4.0352 -2.0412 35 1 2.4025 3.0600 -3.6240 36 1 2.1689 0.6302 -5.0441 37 1 0.5549 1.3726 -4.9342 38 1 0.0802 3.4812 -6.0328 39 1 0.6565 5.0200 -7.8651 40 1 2.8765 4.9029 -8.9212 41 1 8.1497 3.3995 -9.7452 42 1 3.9501 1.7086 -6.2886 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647086571.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:46 Heat of formation + Delta-G solvation = -11.168653 kcal Electronic energy + Delta-G solvation = -26185.125129 eV Core-core repulsion = 22323.266095 eV Total energy + Delta-G solvation = -3861.859035 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.45500 -40.94598 -40.31331 -38.47865 -36.51645 -35.48448 -34.30317 -34.09968 -32.62349 -31.61752 -30.71001 -27.79307 -27.15718 -26.05026 -25.81970 -23.27335 -22.99217 -22.46400 -22.02258 -19.78655 -19.11980 -18.97332 -18.40905 -17.85646 -16.88075 -16.82500 -16.63615 -16.33814 -16.09776 -15.61255 -15.56462 -15.44523 -15.17417 -14.94208 -14.84614 -14.40943 -14.25164 -13.91826 -13.70113 -13.53174 -13.34308 -13.04459 -12.78260 -12.59315 -12.52608 -12.34326 -12.26833 -12.08993 -11.99927 -11.72239 -11.21588 -10.90730 -10.80806 -10.79182 -10.41037 -10.13336 -9.75589 -9.02749 -8.47339 -6.15576 -0.67967 -0.12552 0.37656 0.71388 1.35984 1.43381 1.53658 1.71023 2.05377 2.17453 2.65916 2.83849 2.90635 3.01787 3.17211 3.22780 3.39015 3.57623 3.71602 3.85620 4.10463 4.20290 4.25626 4.32025 4.40072 4.43402 4.47604 4.53506 4.68584 4.74255 4.75914 5.01899 5.02963 5.08382 5.12464 5.21702 5.23692 5.26679 5.40524 5.63008 5.71121 5.72670 5.77340 6.01854 6.17219 6.36871 6.88736 6.97949 7.02721 7.78376 8.75909 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017503 B = 0.002425 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.337010 B =11545.310543 C =12162.603546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.081 4.081 3 C 0.229 3.771 4 N -0.536 5.536 5 C 0.317 3.683 6 N -0.539 5.539 7 C 0.190 3.810 8 C -0.253 4.253 9 C 0.569 3.431 10 O -0.544 6.544 11 N -0.707 5.707 12 C 0.176 3.824 13 C -0.060 4.060 14 C -0.166 4.166 15 C -0.070 4.070 16 C -0.235 4.235 17 C 0.112 3.888 18 O -0.233 6.233 19 C -0.410 4.410 20 H 0.104 0.896 21 C -0.023 4.023 22 N -0.921 5.921 23 Si 1.017 2.983 24 H -0.250 1.250 25 H -0.270 1.270 26 H -0.271 1.271 27 C -0.180 4.180 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.234 0.766 34 H 0.192 0.808 35 H 0.409 0.591 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.119 0.881 41 H 0.272 0.728 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.853 0.633 16.844 21.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.119 4.119 3 C 0.082 3.918 4 N -0.250 5.250 5 C 0.031 3.969 6 N -0.253 5.253 7 C 0.023 3.977 8 C -0.261 4.261 9 C 0.356 3.644 10 O -0.423 6.423 11 N -0.359 5.359 12 C 0.054 3.946 13 C -0.061 4.061 14 C -0.185 4.185 15 C -0.088 4.088 16 C -0.254 4.254 17 C 0.061 3.939 18 O -0.140 6.140 19 C -0.486 4.486 20 H 0.121 0.879 21 C -0.221 4.221 22 N -0.559 5.559 23 Si 0.836 3.164 24 H -0.173 1.173 25 H -0.195 1.195 26 H -0.196 1.196 27 C -0.200 4.200 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.117 0.883 32 H 0.107 0.893 33 H 0.250 0.750 34 H 0.209 0.791 35 H 0.246 0.754 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.168 0.832 39 H 0.165 0.835 40 H 0.136 0.864 41 H 0.081 0.919 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.580 0.058 17.683 22.296 hybrid contribution 0.859 0.519 -1.629 1.913 sum -12.721 0.577 16.055 20.492 Atomic orbital electron populations 1.21503 0.92540 1.03117 1.01168 1.20814 0.97884 0.88580 1.04638 1.22236 0.85734 0.97027 0.86766 1.68492 1.14385 1.12814 1.29339 1.25956 0.86793 0.85912 0.98220 1.68559 1.18513 1.38730 0.99512 1.23883 0.85667 0.90698 0.97451 1.21563 1.10114 0.98520 0.95900 1.17814 0.78481 0.84874 0.83263 1.90740 1.44309 1.20059 1.87205 1.45905 1.62988 1.21956 1.05045 1.20114 1.01592 0.94009 0.78906 1.19444 0.92402 0.97385 0.96874 1.21016 1.00321 0.97430 0.99765 1.21162 0.94579 0.98211 0.94863 1.21379 0.95942 1.03027 1.05053 1.19875 0.86195 0.95089 0.92705 1.83949 1.29014 1.49868 1.51121 1.21845 0.98541 1.10608 1.17645 0.87915 1.26560 0.94069 1.00600 1.00827 1.70189 1.04624 1.37163 1.43949 0.84548 0.79192 0.76424 0.76195 1.17284 1.19488 1.19581 1.20244 0.98477 1.02641 0.98613 0.90512 0.92863 0.93235 0.88315 0.89272 0.74986 0.79079 0.75405 0.91168 0.88656 0.83218 0.83477 0.86355 0.91913 0.87364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 9.51 71.98 0.68 -1.58 16 2 C -0.08 -1.60 5.49 29.85 0.16 -1.44 16 3 C 0.23 4.89 6.12 42.92 0.26 5.16 16 4 N -0.54 -10.83 10.36 -187.06 -1.94 -12.76 16 5 C 0.32 5.38 12.27 180.84 2.22 7.60 16 6 N -0.54 -10.36 10.42 -198.97 -2.07 -12.44 16 7 C 0.19 3.49 10.80 85.07 0.92 4.41 16 8 C -0.25 -5.29 5.91 -19.91 -0.12 -5.40 16 9 C 0.57 12.96 7.73 86.78 0.67 13.63 16 10 O -0.54 -14.53 12.00 -3.88 -0.05 -14.58 16 11 N -0.71 -14.82 5.50 -469.73 -2.59 -17.40 16 12 C 0.18 4.13 5.80 85.63 0.50 4.63 16 13 C -0.06 -1.73 5.25 -19.88 -0.10 -1.84 16 14 C -0.17 -4.29 9.70 22.30 0.22 -4.07 16 15 C -0.07 -2.07 10.04 22.25 0.22 -1.85 16 16 C -0.23 -9.29 9.17 22.39 0.21 -9.09 16 17 C 0.11 5.16 6.65 22.58 0.15 5.31 16 18 O -0.23 -13.45 9.76 -22.77 -0.22 -13.67 16 19 C -0.41 -23.04 9.49 67.92 0.64 -22.39 16 20 H 0.10 5.25 5.20 -2.91 -0.02 5.24 16 21 C -0.02 -1.28 5.49 84.83 0.47 -0.81 16 22 N -0.92 -55.55 13.67 21.61 0.30 -55.26 16 23 Si 1.02 41.74 29.55 68.60 2.03 43.76 16 24 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 25 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 26 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 27 C -0.18 -6.94 9.64 22.39 0.22 -6.72 16 28 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.05 1.04 6.86 -2.39 -0.02 1.02 16 31 H 0.10 2.23 5.96 -2.39 -0.01 2.21 16 32 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.23 2.08 8.06 -2.91 -0.02 2.06 16 34 H 0.19 2.55 6.58 -2.91 -0.02 2.53 16 35 H 0.41 7.40 6.63 -92.71 -0.61 6.79 16 36 H 0.07 1.80 8.08 -2.39 -0.02 1.78 16 37 H 0.10 1.97 8.08 -2.39 -0.02 1.95 16 38 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 39 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 40 H 0.12 4.84 5.64 -2.91 -0.02 4.82 16 41 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 42 H 0.11 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -72.17 359.64 3.23 -68.93 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.46 Total: 27.86 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: 7.31 Total: -14.45 kcal Atomic # 7 Polarization: -91.56 SS G_CDS: -6.30 Total: -97.86 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.27 Total: -28.25 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.76 kcal Total: -72.17 3.23 -68.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647086571.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.765 kcal (2) G-P(sol) polarization free energy of solvation -72.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds