Wall clock time and date at job start Tue Mar 31 2020 14:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39921 * 125.87738 * 2 1 4 4 C 1.35317 * 107.93343 * 179.76885 * 3 2 1 5 5 N 1.35231 * 107.71075 * 0.42484 * 4 3 2 6 6 C 1.40204 * 126.05132 * 179.83699 * 5 4 3 7 7 C 1.38958 * 119.99849 * 4.71986 * 6 5 4 8 8 C 1.38219 * 120.22711 * 179.97438 * 7 6 5 9 9 C 1.38021 * 120.21823 * 0.02562 * 8 7 6 10 10 C 1.39580 * 119.98757 * 0.02562 * 9 8 7 11 11 C 1.47853 * 120.11467 * 179.97438 * 10 9 8 12 12 O 1.21550 * 120.00451 * 173.11312 * 11 10 9 13 13 N 1.34781 * 119.99902 * 353.11074 * 11 10 9 14 14 C 1.47574 * 134.49506 * 174.44407 * 13 11 10 15 15 C 1.53943 * 86.11922 * 155.35506 * 14 13 11 16 16 O 1.42901 * 113.74292 * 269.15038 * 15 14 13 17 17 C 1.50707 * 113.74290 * 137.95230 * 15 14 13 18 18 H 1.07999 * 119.99881 * 1.92168 * 17 15 14 19 19 C 1.37879 * 119.99896 * 181.92562 * 17 15 14 20 20 N 1.31509 * 119.99526 * 179.97438 * 19 17 15 21 21 Si 1.86793 * 119.99919 * 359.97438 * 19 17 15 22 22 H 1.48505 * 109.47071 * 269.99647 * 21 19 17 23 23 H 1.48500 * 109.47596 * 30.00083 * 21 19 17 24 24 H 1.48503 * 109.47166 * 150.00076 * 21 19 17 25 25 C 1.47817 * 134.45383 * 354.30228 * 13 11 10 26 26 C 1.38569 * 119.99173 * 184.98998 * 6 5 4 27 27 N 1.30873 * 125.87805 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47052 * 269.98181 * 1 2 3 29 29 H 1.09004 * 109.47074 * 29.98456 * 1 2 3 30 30 H 1.08999 * 109.46943 * 149.98301 * 1 2 3 31 31 H 1.07998 * 126.03198 * 0.03394 * 3 2 1 32 32 H 1.08000 * 126.14900 * 180.26320 * 4 3 2 33 33 H 1.07998 * 119.88403 * 359.97438 * 7 6 5 34 34 H 1.08000 * 119.89196 * 180.02562 * 8 7 6 35 35 H 1.07998 * 120.00695 * 180.02562 * 9 8 7 36 36 H 1.09002 * 113.77239 * 41.05528 * 14 13 11 37 37 H 1.09000 * 113.86913 * 269.66887 * 14 13 11 38 38 H 0.96697 * 114.00451 * 178.07083 * 16 15 14 39 39 H 0.97006 * 119.99612 * 179.97438 * 20 19 17 40 40 H 1.09004 * 113.76389 * 90.38378 * 25 13 11 41 41 H 1.09001 * 113.83937 * 318.92409 * 25 13 11 42 42 H 1.07994 * 120.10518 * 0.02593 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3270 1.1337 0.0000 4 6 3.6144 0.7169 0.0052 5 7 3.6089 -0.6354 -0.0012 6 6 4.7391 -1.4651 -0.0020 7 6 6.0086 -0.9099 0.1031 8 6 7.1260 -1.7235 0.1032 9 6 6.9883 -3.0928 -0.0015 10 6 5.7175 -3.6600 -0.1086 11 6 5.5668 -5.1265 -0.2214 12 8 4.4601 -5.6281 -0.1885 13 7 6.6566 -5.9072 -0.3609 14 6 6.8873 -7.3644 -0.3964 15 6 8.1597 -7.0378 -1.1990 16 8 7.9579 -7.0155 -2.6135 17 6 9.3607 -7.8511 -0.7897 18 1 9.2669 -8.6030 -0.0201 19 6 10.5792 -7.6353 -1.3978 20 7 11.6272 -8.3447 -1.0402 21 14 10.7412 -6.3353 -2.7293 22 1 10.4684 -6.9474 -4.0546 23 1 9.7655 -5.2445 -2.4776 24 1 12.1186 -5.7805 -2.7145 25 6 8.1002 -5.6467 -0.5423 26 6 4.5902 -2.8383 -0.1133 27 7 2.2740 -1.0604 -0.0005 28 1 -0.3633 -0.0003 1.0276 29 1 -0.3633 0.8902 -0.5136 30 1 -0.3633 -0.8898 -0.5141 31 1 1.9917 2.1603 0.0005 32 1 4.4891 1.3502 0.0106 33 1 6.1226 0.1609 0.1848 34 1 8.1101 -1.2863 0.1856 35 1 7.8637 -3.7253 -0.0006 36 1 6.1378 -7.9142 -0.9657 37 1 7.0852 -7.8035 0.5814 38 1 8.7479 -6.7819 -3.1199 39 1 12.4844 -8.1930 -1.4683 40 1 8.6553 -5.5785 0.3933 41 1 8.3174 -4.8276 -1.2279 42 1 3.6046 -3.2710 -0.1998 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649784213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:04 Heat of formation + Delta-G solvation = 86.850672 kcal Electronic energy + Delta-G solvation = -26841.633494 eV Core-core repulsion = 22984.024896 eV Total energy + Delta-G solvation = -3857.608598 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.78677 -40.26495 -38.89328 -37.45564 -34.64931 -34.22152 -32.61429 -31.54885 -31.20193 -29.99820 -28.97391 -27.65307 -25.86959 -25.62290 -23.76980 -22.69576 -21.55067 -20.15540 -19.91576 -19.31663 -18.09322 -17.46673 -16.84489 -16.38811 -15.90679 -15.65964 -15.59097 -15.05234 -14.87953 -14.47997 -14.06348 -13.76589 -13.74991 -13.65957 -13.54064 -13.19698 -13.14543 -12.81150 -12.61079 -12.48662 -12.34547 -12.20389 -11.93807 -11.60455 -11.26001 -11.00647 -10.81484 -10.68038 -10.26378 -10.19341 -9.89043 -9.40269 -9.37848 -9.22173 -9.08486 -8.74262 -8.24375 -8.12528 -6.48210 -4.54906 0.51283 0.88618 1.89539 2.10230 2.45707 2.93049 2.95211 3.00888 3.08675 3.21980 3.82899 3.96694 4.14696 4.35839 4.50559 4.59744 4.61913 4.80109 4.85439 4.97110 5.08098 5.15502 5.20673 5.32116 5.34568 5.44463 5.48486 5.56755 5.61497 5.77189 5.89671 5.93101 5.99604 6.10544 6.11846 6.19588 6.27915 6.28742 6.40554 6.50968 6.53241 6.93832 7.13026 7.42214 7.96832 8.13988 8.43537 8.49253 8.56200 9.08758 10.63803 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.023771 B = 0.002809 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.605139 B = 9965.087425 C =10646.288244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.076 3.924 3 C -0.262 4.262 4 C 0.054 3.946 5 N -0.319 5.319 6 C 0.145 3.855 7 C -0.122 4.122 8 C -0.100 4.100 9 C -0.106 4.106 10 C -0.095 4.095 11 C 0.572 3.428 12 O -0.548 6.548 13 N -0.627 5.627 14 C 0.129 3.871 15 C 0.196 3.804 16 O -0.552 6.552 17 C -0.537 4.537 18 H 0.092 0.908 19 C 0.081 3.919 20 N -0.874 5.874 21 Si 0.856 3.144 22 H -0.266 1.266 23 H -0.256 1.256 24 H -0.282 1.282 25 C 0.053 3.947 26 C -0.063 4.063 27 N -0.284 5.284 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.153 0.847 32 H 0.178 0.822 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.150 0.850 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.353 0.647 39 H 0.271 0.729 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.563 20.219 2.384 22.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.092 4.092 3 C -0.290 4.290 4 C -0.089 4.089 5 N -0.094 5.094 6 C 0.053 3.947 7 C -0.143 4.143 8 C -0.118 4.118 9 C -0.124 4.124 10 C -0.099 4.099 11 C 0.361 3.639 12 O -0.428 6.428 13 N -0.360 5.360 14 C 0.008 3.992 15 C 0.155 3.845 16 O -0.363 6.363 17 C -0.574 4.574 18 H 0.110 0.890 19 C -0.125 4.125 20 N -0.509 5.509 21 Si 0.685 3.315 22 H -0.193 1.193 23 H -0.181 1.181 24 H -0.209 1.209 25 C -0.069 4.069 26 C -0.084 4.084 27 N -0.104 5.104 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.171 0.829 32 H 0.195 0.805 33 H 0.150 0.850 34 H 0.158 0.842 35 H 0.167 0.833 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.204 0.796 39 H 0.082 0.918 40 H 0.118 0.882 41 H 0.094 0.906 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.602 18.546 2.567 22.026 hybrid contribution 1.003 1.925 -0.835 2.326 sum -10.599 20.472 1.732 23.117 Atomic orbital electron populations 1.20212 0.86185 1.03566 1.03200 1.22581 0.97316 0.90678 0.98596 1.21462 0.91361 0.99998 1.16189 1.22613 1.00053 0.84325 1.01893 1.45775 1.04272 1.04126 1.55226 1.17372 0.83656 0.89747 1.03915 1.20927 0.90168 1.00568 1.02662 1.20955 0.98346 0.93035 0.99509 1.22142 0.97757 0.95827 0.96710 1.19912 0.93348 0.93703 1.02928 1.17729 0.83518 0.85524 0.77105 1.90745 1.24621 1.75272 1.52159 1.50010 1.06936 1.09370 1.69634 1.23333 0.95979 0.80085 0.99842 1.20553 0.94222 0.90584 0.79096 1.86485 1.38631 1.92634 1.18517 1.21217 0.91020 1.21654 1.23552 0.88968 1.25007 0.95783 0.95477 0.96237 1.69854 1.00778 1.38952 1.41355 0.87373 0.78367 0.82707 0.83076 1.19254 1.18141 1.20875 1.24877 0.78414 1.02258 1.01375 1.20942 1.00249 0.90282 0.96917 1.77521 0.85482 1.22650 1.24777 0.90272 0.90232 0.90624 0.82932 0.80537 0.84990 0.84215 0.83290 0.90303 0.88390 0.79577 0.91834 0.88179 0.90573 0.83262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.45 36.01 0.38 -0.17 16 2 C 0.08 0.85 7.22 -82.37 -0.59 0.26 16 3 C -0.26 -2.47 10.74 -39.99 -0.43 -2.90 16 4 C 0.05 0.53 10.79 -17.10 -0.18 0.35 16 5 N -0.32 -4.25 3.80 -10.73 -0.04 -4.30 16 6 C 0.14 1.98 6.67 -83.64 -0.56 1.43 16 7 C -0.12 -1.30 9.45 -39.32 -0.37 -1.68 16 8 C -0.10 -1.08 10.02 -39.67 -0.40 -1.48 16 9 C -0.11 -1.47 9.08 -39.16 -0.36 -1.83 16 10 C -0.10 -1.60 5.87 -104.99 -0.62 -2.22 16 11 C 0.57 11.50 7.99 -12.32 -0.10 11.40 16 12 O -0.55 -12.59 17.10 5.32 0.09 -12.50 16 13 N -0.63 -12.40 3.60 -179.23 -0.64 -13.05 16 14 C 0.13 2.62 8.23 -2.97 -0.02 2.60 16 15 C 0.20 4.31 1.06 -90.85 -0.10 4.21 16 16 O -0.55 -12.69 13.35 -35.23 -0.47 -13.16 16 17 C -0.54 -13.31 9.19 -34.44 -0.32 -13.63 16 18 H 0.09 2.46 8.06 -52.49 -0.42 2.03 16 19 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 20 N -0.87 -23.71 13.96 55.43 0.77 -22.93 16 21 Si 0.86 18.03 24.31 -169.99 -4.13 13.90 16 22 H -0.27 -5.55 7.05 56.52 0.40 -5.15 16 23 H -0.26 -4.94 5.16 56.52 0.29 -4.64 16 24 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 25 C 0.05 1.00 4.68 -2.84 -0.01 0.99 16 26 C -0.06 -1.03 9.21 -38.99 -0.36 -1.38 16 27 N -0.28 -4.14 11.88 33.69 0.40 -3.74 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.18 1.05 7.06 -52.49 -0.37 0.68 16 33 H 0.13 0.95 6.74 -52.49 -0.35 0.60 16 34 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.15 2.05 4.09 -52.49 -0.21 1.84 16 36 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 37 H 0.10 1.83 8.09 -51.93 -0.42 1.41 16 38 H 0.35 7.66 3.57 45.56 0.16 7.82 16 39 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 40 H 0.10 1.73 8.00 -51.93 -0.42 1.32 16 41 H 0.08 1.36 5.59 -51.93 -0.29 1.06 16 42 H 0.15 2.68 7.31 -52.49 -0.38 2.30 16 LS Contribution 348.92 15.07 5.26 5.26 Total: -1.00 -32.33 348.92 -7.40 -39.73 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -4.49 Total: 12.90 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -4.14 Total: -2.11 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 0.49 Total: -44.02 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.38 Total: -25.66 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -4.13 Total: 13.90 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.33 -7.40 -39.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649784213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.579 kcal (2) G-P(sol) polarization free energy of solvation -32.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds