Wall clock time and date at job start Tue Mar 31 2020 14:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39921 * 125.87738 * 2 1 4 4 C 1.35317 * 107.93343 * 179.76885 * 3 2 1 5 5 N 1.35231 * 107.71075 * 0.42484 * 4 3 2 6 6 C 1.40204 * 126.05132 * 179.83699 * 5 4 3 7 7 C 1.38958 * 119.99849 * 4.71986 * 6 5 4 8 8 C 1.38219 * 120.22711 * 179.97438 * 7 6 5 9 9 C 1.38021 * 120.21823 * 0.02562 * 8 7 6 10 10 C 1.39580 * 119.98757 * 0.02562 * 9 8 7 11 11 C 1.47853 * 120.11467 * 179.97438 * 10 9 8 12 12 O 1.21550 * 120.00451 * 173.11312 * 11 10 9 13 13 N 1.34781 * 119.99902 * 353.11074 * 11 10 9 14 14 C 1.47574 * 134.49506 * 174.44407 * 13 11 10 15 15 C 1.53943 * 86.11922 * 155.35506 * 14 13 11 16 16 O 1.42901 * 113.74292 * 269.15038 * 15 14 13 17 17 C 1.50707 * 113.74290 * 137.95230 * 15 14 13 18 18 H 1.07999 * 119.99881 * 1.92168 * 17 15 14 19 19 C 1.37879 * 119.99896 * 181.92562 * 17 15 14 20 20 N 1.31509 * 119.99526 * 179.97438 * 19 17 15 21 21 Si 1.86793 * 119.99919 * 359.97438 * 19 17 15 22 22 H 1.48505 * 109.47071 * 269.99647 * 21 19 17 23 23 H 1.48500 * 109.47596 * 30.00083 * 21 19 17 24 24 H 1.48503 * 109.47166 * 150.00076 * 21 19 17 25 25 C 1.47817 * 134.45383 * 354.30228 * 13 11 10 26 26 C 1.38569 * 119.99173 * 184.98998 * 6 5 4 27 27 N 1.30873 * 125.87805 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47052 * 269.98181 * 1 2 3 29 29 H 1.09004 * 109.47074 * 29.98456 * 1 2 3 30 30 H 1.08999 * 109.46943 * 149.98301 * 1 2 3 31 31 H 1.07998 * 126.03198 * 0.03394 * 3 2 1 32 32 H 1.08000 * 126.14900 * 180.26320 * 4 3 2 33 33 H 1.07998 * 119.88403 * 359.97438 * 7 6 5 34 34 H 1.08000 * 119.89196 * 180.02562 * 8 7 6 35 35 H 1.07998 * 120.00695 * 180.02562 * 9 8 7 36 36 H 1.09002 * 113.77239 * 41.05528 * 14 13 11 37 37 H 1.09000 * 113.86913 * 269.66887 * 14 13 11 38 38 H 0.96697 * 114.00451 * 178.07083 * 16 15 14 39 39 H 0.97006 * 119.99612 * 179.97438 * 20 19 17 40 40 H 1.09004 * 113.76389 * 90.38378 * 25 13 11 41 41 H 1.09001 * 113.83937 * 318.92409 * 25 13 11 42 42 H 1.07994 * 120.10518 * 0.02593 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3270 1.1337 0.0000 4 6 3.6144 0.7169 0.0052 5 7 3.6089 -0.6354 -0.0012 6 6 4.7391 -1.4651 -0.0020 7 6 6.0086 -0.9099 0.1031 8 6 7.1260 -1.7235 0.1032 9 6 6.9883 -3.0928 -0.0015 10 6 5.7175 -3.6600 -0.1086 11 6 5.5668 -5.1265 -0.2214 12 8 4.4601 -5.6281 -0.1885 13 7 6.6566 -5.9072 -0.3609 14 6 6.8873 -7.3644 -0.3964 15 6 8.1597 -7.0378 -1.1990 16 8 7.9579 -7.0155 -2.6135 17 6 9.3607 -7.8511 -0.7897 18 1 9.2669 -8.6030 -0.0201 19 6 10.5792 -7.6353 -1.3978 20 7 11.6272 -8.3447 -1.0402 21 14 10.7412 -6.3353 -2.7293 22 1 10.4684 -6.9474 -4.0546 23 1 9.7655 -5.2445 -2.4776 24 1 12.1186 -5.7805 -2.7145 25 6 8.1002 -5.6467 -0.5423 26 6 4.5902 -2.8383 -0.1133 27 7 2.2740 -1.0604 -0.0005 28 1 -0.3633 -0.0003 1.0276 29 1 -0.3633 0.8902 -0.5136 30 1 -0.3633 -0.8898 -0.5141 31 1 1.9917 2.1603 0.0005 32 1 4.4891 1.3502 0.0106 33 1 6.1226 0.1609 0.1848 34 1 8.1101 -1.2863 0.1856 35 1 7.8637 -3.7253 -0.0006 36 1 6.1378 -7.9142 -0.9657 37 1 7.0852 -7.8035 0.5814 38 1 8.7479 -6.7819 -3.1199 39 1 12.4844 -8.1930 -1.4683 40 1 8.6553 -5.5785 0.3933 41 1 8.3174 -4.8276 -1.2279 42 1 3.6046 -3.2710 -0.1998 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649784213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:03 Heat of formation + Delta-G solvation = 63.339953 kcal Electronic energy + Delta-G solvation = -26842.652995 eV Core-core repulsion = 22984.024896 eV Total energy + Delta-G solvation = -3858.628099 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.61300 -41.72717 -40.14111 -38.98042 -36.34853 -35.16344 -34.54977 -32.59824 -32.09316 -30.82331 -30.52242 -28.60891 -27.44133 -27.27050 -24.89379 -23.66397 -22.63714 -21.59971 -20.72617 -20.60771 -19.52834 -19.09762 -18.33834 -17.82394 -17.07640 -16.94519 -16.66715 -16.42141 -16.03946 -15.50882 -15.43433 -15.21403 -14.94852 -14.91454 -14.53289 -14.38672 -14.34448 -14.07819 -13.93752 -13.79630 -13.34505 -13.19075 -13.07570 -12.82117 -12.60252 -12.57968 -12.44649 -11.92531 -11.63374 -11.53475 -11.16815 -11.12228 -10.94067 -10.48358 -10.27530 -10.19298 -9.74033 -9.13238 -8.41310 -6.54686 -0.46987 -0.14609 1.03648 1.26769 1.28848 1.29532 1.42663 1.67911 1.71962 1.77086 2.19399 2.67076 2.77107 3.06954 3.31432 3.47845 3.69195 3.74005 3.79870 3.96763 3.98885 4.04965 4.19443 4.31442 4.35201 4.42590 4.56307 4.61457 4.66186 4.70007 4.72718 4.79014 4.81671 4.87312 4.93036 5.03881 5.12736 5.18984 5.21726 5.27777 5.51985 5.68603 6.05062 6.12537 6.52883 6.58399 6.62251 6.68786 6.92817 7.13576 8.73788 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.023771 B = 0.002809 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.605139 B = 9965.087425 C =10646.288244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.067 3.933 3 C -0.263 4.263 4 C 0.055 3.945 5 N -0.338 5.338 6 C 0.140 3.860 7 C -0.101 4.101 8 C -0.081 4.081 9 C -0.110 4.110 10 C -0.119 4.119 11 C 0.565 3.435 12 O -0.593 6.593 13 N -0.627 5.627 14 C 0.123 3.877 15 C 0.187 3.813 16 O -0.563 6.563 17 C -0.543 4.543 18 H 0.057 0.943 19 C 0.029 3.971 20 N -0.922 5.922 21 Si 0.916 3.084 22 H -0.263 1.263 23 H -0.224 1.224 24 H -0.278 1.278 25 C 0.070 3.930 26 C -0.088 4.088 27 N -0.349 5.349 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.064 0.936 31 H 0.187 0.813 32 H 0.222 0.778 33 H 0.181 0.819 34 H 0.187 0.813 35 H 0.152 0.848 36 H 0.068 0.932 37 H 0.109 0.891 38 H 0.358 0.642 39 H 0.274 0.726 40 H 0.118 0.882 41 H 0.097 0.903 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.551 25.554 1.991 27.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.100 4.100 3 C -0.291 4.291 4 C -0.085 4.085 5 N -0.114 5.114 6 C 0.048 3.952 7 C -0.121 4.121 8 C -0.099 4.099 9 C -0.129 4.129 10 C -0.122 4.122 11 C 0.357 3.643 12 O -0.476 6.476 13 N -0.359 5.359 14 C 0.001 3.999 15 C 0.146 3.854 16 O -0.374 6.374 17 C -0.581 4.581 18 H 0.075 0.925 19 C -0.172 4.172 20 N -0.559 5.559 21 Si 0.740 3.260 22 H -0.189 1.189 23 H -0.147 1.147 24 H -0.204 1.204 25 C -0.052 4.052 26 C -0.109 4.109 27 N -0.170 5.170 28 H 0.108 0.892 29 H 0.125 0.875 30 H 0.083 0.917 31 H 0.204 0.796 32 H 0.239 0.761 33 H 0.198 0.802 34 H 0.204 0.796 35 H 0.169 0.831 36 H 0.086 0.914 37 H 0.127 0.873 38 H 0.210 0.790 39 H 0.083 0.917 40 H 0.136 0.864 41 H 0.115 0.885 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.603 23.902 2.182 26.239 hybrid contribution 0.589 0.272 -0.654 0.922 sum -10.014 24.175 1.528 26.211 Atomic orbital electron populations 1.20360 0.84280 1.04377 1.04124 1.23290 0.98781 0.90927 0.96962 1.21940 0.91000 1.00900 1.15259 1.23442 1.01914 0.83109 1.00076 1.45889 1.03689 1.05321 1.56497 1.17605 0.85347 0.88813 1.03430 1.21462 0.88248 1.02922 0.99491 1.21461 1.00445 0.91370 0.96673 1.22215 0.96048 0.97624 0.97019 1.19634 0.95088 0.91257 1.06249 1.18389 0.82713 0.87215 0.75960 1.90704 1.26198 1.76465 1.54217 1.49985 1.07503 1.08830 1.69608 1.23356 0.95278 0.81105 1.00165 1.20590 0.93377 0.92578 0.78877 1.86484 1.39045 1.92916 1.18983 1.21281 0.92474 1.21449 1.22858 0.92496 1.25821 0.95073 0.97749 0.98564 1.69996 1.01536 1.41159 1.43209 0.86384 0.79213 0.80728 0.79692 1.18884 1.14711 1.20427 1.24785 0.77755 1.00442 1.02174 1.20697 0.98596 0.92060 0.99548 1.77502 0.86899 1.25029 1.27572 0.89191 0.87454 0.91742 0.79610 0.76138 0.80221 0.79602 0.83059 0.91383 0.87350 0.78990 0.91655 0.86378 0.88493 0.86892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.03 10.45 71.24 0.74 -0.28 16 2 C 0.07 1.45 7.22 43.11 0.31 1.76 16 3 C -0.26 -4.11 10.74 22.00 0.24 -3.88 16 4 C 0.06 0.88 10.79 83.49 0.90 1.78 16 5 N -0.34 -8.51 3.80 -187.85 -0.71 -9.23 16 6 C 0.14 3.61 6.67 38.05 0.25 3.86 16 7 C -0.10 -1.64 9.45 22.44 0.21 -1.43 16 8 C -0.08 -1.33 10.02 22.21 0.22 -1.11 16 9 C -0.11 -2.75 9.08 22.54 0.20 -2.55 16 10 C -0.12 -3.99 5.87 -20.10 -0.12 -4.11 16 11 C 0.57 23.54 7.99 86.79 0.69 24.24 16 12 O -0.59 -29.11 17.10 -3.87 -0.07 -29.17 16 13 N -0.63 -25.00 3.60 -843.07 -3.03 -28.03 16 14 C 0.12 5.15 8.23 86.49 0.71 5.87 16 15 C 0.19 8.14 1.06 -10.88 -0.01 8.13 16 16 O -0.56 -25.41 13.35 -148.98 -1.99 -27.39 16 17 C -0.54 -27.43 9.19 25.60 0.24 -27.20 16 18 H 0.06 3.19 8.06 -2.91 -0.02 3.17 16 19 C 0.03 1.49 5.47 84.66 0.46 1.95 16 20 N -0.92 -50.97 13.96 21.45 0.30 -50.67 16 21 Si 0.92 35.87 24.31 68.60 1.67 37.54 16 22 H -0.26 -10.15 7.05 99.48 0.70 -9.45 16 23 H -0.22 -7.51 5.16 99.48 0.51 -7.00 16 24 H -0.28 -10.73 7.11 99.48 0.71 -10.02 16 25 C 0.07 2.52 4.68 86.44 0.40 2.92 16 26 C -0.09 -2.95 9.21 22.65 0.21 -2.74 16 27 N -0.35 -10.36 11.88 -47.33 -0.56 -10.92 16 28 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.19 1.50 8.06 -2.91 -0.02 1.48 16 32 H 0.22 1.20 7.06 -2.91 -0.02 1.18 16 33 H 0.18 1.20 6.74 -2.91 -0.02 1.18 16 34 H 0.19 1.41 8.06 -2.91 -0.02 1.39 16 35 H 0.15 3.63 4.09 -2.91 -0.01 3.62 16 36 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 37 H 0.11 4.23 8.09 -2.39 -0.02 4.21 16 38 H 0.36 14.83 3.57 -74.06 -0.26 14.57 16 39 H 0.27 14.08 8.31 -92.70 -0.77 13.31 16 40 H 0.12 3.83 8.00 -2.38 -0.02 3.81 16 41 H 0.10 3.10 5.59 -2.39 -0.01 3.08 16 42 H 0.11 4.52 7.31 -2.91 -0.02 4.49 16 Total: -1.00 -77.67 348.92 1.89 -75.78 By element: Atomic # 1 Polarization: 34.25 SS G_CDS: 0.61 Total: 34.86 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 5.67 Total: 7.23 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -4.01 Total: -98.85 kcal Atomic # 8 Polarization: -54.51 SS G_CDS: -2.05 Total: -56.57 kcal Atomic # 14 Polarization: 35.87 SS G_CDS: 1.67 Total: 37.54 kcal Total: -77.67 1.89 -75.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649784213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.125 kcal (2) G-P(sol) polarization free energy of solvation -77.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds