Wall clock time and date at job start Tue Mar 31 2020 15:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.30943 * 122.90424 * 2 1 4 4 C 1.29431 * 117.36350 * 180.02562 * 3 2 1 5 5 S 1.70950 * 110.39410 * 359.97438 * 4 3 2 6 6 C 1.35661 * 122.90839 * 180.02562 * 2 1 3 7 7 C 1.46685 * 126.12794 * 359.71494 * 6 2 1 8 8 O 1.21693 * 119.99973 * 351.07494 * 7 6 2 9 9 N 1.34772 * 120.00291 * 171.07474 * 7 6 2 10 10 C 1.46495 * 119.99838 * 0.63810 * 9 7 6 11 11 C 1.46506 * 120.00212 * 180.63780 * 9 7 6 12 12 C 1.52997 * 109.46827 * 89.99956 * 11 9 7 13 13 O 1.42904 * 109.47210 * 65.00335 * 12 11 9 14 14 C 1.42897 * 114.00339 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47516 * 179.97438 * 14 13 12 16 16 N 1.46505 * 109.46836 * 64.99770 * 15 14 13 17 17 C 1.46497 * 120.00155 * 269.99838 * 16 15 14 18 18 C 1.36938 * 119.99917 * 90.00168 * 16 15 14 19 19 H 1.08004 * 119.99699 * 24.71260 * 18 16 15 20 20 C 1.38809 * 120.00241 * 204.71416 * 18 16 15 21 21 N 1.31627 * 119.99685 * 6.50746 * 20 18 16 22 22 Si 1.86799 * 120.00368 * 186.50851 * 20 18 16 23 23 H 1.48493 * 109.47221 * 89.99659 * 22 20 18 24 24 H 1.48501 * 109.46842 * 210.00221 * 22 20 18 25 25 H 1.48500 * 109.46785 * 329.99680 * 22 20 18 26 26 H 1.09007 * 109.47559 * 269.97739 * 1 2 3 27 27 H 1.09003 * 109.47569 * 29.97603 * 1 2 3 28 28 H 1.09000 * 109.47648 * 149.97834 * 1 2 3 29 29 H 1.08003 * 124.80249 * 180.02562 * 4 3 2 30 30 H 1.09006 * 109.47019 * 83.41335 * 10 9 7 31 31 H 1.08999 * 109.47401 * 203.40970 * 10 9 7 32 32 H 1.08997 * 109.47314 * 323.41645 * 10 9 7 33 33 H 1.09000 * 109.47127 * 210.00188 * 11 9 7 34 34 H 1.08996 * 109.46762 * 330.00493 * 11 9 7 35 35 H 1.08995 * 109.47185 * 184.99936 * 12 11 9 36 36 H 1.09001 * 109.47697 * 305.00434 * 12 11 9 37 37 H 1.09001 * 109.47083 * 299.99973 * 14 13 12 38 38 H 1.09001 * 109.47147 * 59.99483 * 14 13 12 39 39 H 1.08995 * 109.47306 * 184.99793 * 15 14 13 40 40 H 1.08998 * 109.47037 * 305.00278 * 15 14 13 41 41 H 1.09005 * 109.46592 * 95.04862 * 17 16 15 42 42 H 1.08995 * 109.47321 * 215.04448 * 17 16 15 43 43 H 1.08999 * 109.46848 * 335.05459 * 17 16 15 44 44 H 0.97000 * 119.99700 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2182 1.0994 0.0000 4 6 3.5065 0.9744 -0.0005 5 16 3.9447 -0.6780 -0.0004 6 6 2.2439 -1.1389 -0.0005 7 6 1.7192 -2.5087 0.0048 8 8 0.5299 -2.7040 0.1737 9 7 2.5540 -3.5509 -0.1774 10 6 3.9876 -3.3166 -0.3668 11 6 2.0277 -4.9182 -0.1861 12 6 1.6420 -5.3071 -1.6147 13 8 2.8148 -5.3482 -2.4303 14 6 2.5639 -5.7030 -3.7916 15 6 3.8828 -5.7150 -4.5670 16 7 4.7476 -6.7752 -4.0431 17 6 5.6772 -6.4880 -2.9480 18 6 4.6869 -8.0347 -4.5772 19 1 4.3380 -8.1757 -5.5896 20 6 5.0737 -9.1301 -3.8175 21 7 5.3762 -8.9753 -2.5459 22 14 5.1649 -10.8240 -4.5997 23 1 6.5256 -11.0410 -5.1532 24 1 4.8767 -11.8588 -3.5743 25 1 4.1647 -10.9187 -5.6933 26 1 -0.3634 -0.0004 1.0277 27 1 -0.3634 0.8902 -0.5135 28 1 -0.3634 -0.8898 -0.5142 29 1 4.2057 1.7976 -0.0002 30 1 4.4688 -3.2039 0.6048 31 1 4.4276 -4.1630 -0.8941 32 1 4.1332 -2.4085 -0.9518 33 1 2.7905 -5.6034 0.1837 34 1 1.1482 -4.9730 0.4554 35 1 1.1691 -6.2890 -1.6088 36 1 0.9458 -4.5708 -2.0164 37 1 2.1097 -6.6931 -3.8312 38 1 1.8869 -4.9746 -4.2381 39 1 3.6821 -5.8982 -5.6225 40 1 4.3797 -4.7515 -4.4534 41 1 5.2139 -6.7560 -1.9984 42 1 6.5894 -7.0690 -3.0839 43 1 5.9199 -5.4254 -2.9467 44 1 5.6462 -9.7409 -2.0149 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692090795.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:24 Heat of formation + Delta-G solvation = 2.340251 kcal Electronic energy + Delta-G solvation = -26255.784299 eV Core-core repulsion = 22529.955005 eV Total energy + Delta-G solvation = -3725.829293 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.53090 -39.38060 -37.49396 -35.75650 -35.00355 -32.22433 -31.53428 -30.35082 -28.43127 -27.94095 -26.50903 -25.74106 -25.11109 -23.34164 -22.93709 -20.87964 -20.31267 -18.80373 -18.56872 -16.89973 -16.74623 -16.41977 -16.08486 -15.65462 -15.50939 -14.96437 -14.77285 -14.43162 -13.89604 -13.77449 -13.69370 -13.36020 -13.18349 -13.06529 -12.91017 -12.59662 -12.32458 -12.25908 -12.07313 -11.57301 -11.41881 -11.36838 -10.97796 -10.83792 -10.78271 -10.51368 -10.10293 -10.08494 -9.92541 -9.82578 -9.78427 -9.59302 -9.14288 -8.94613 -8.61289 -8.50556 -6.66903 -5.67928 -3.15848 0.07293 1.02876 1.41798 2.28464 2.84267 3.04658 3.38076 3.44497 3.45370 3.95169 4.23946 4.42911 4.52221 4.83857 4.90264 4.99936 5.20440 5.33661 5.42783 5.43872 5.53641 5.58515 5.60320 5.65770 5.70243 5.72205 5.86286 5.91131 6.11095 6.15354 6.19430 6.25969 6.42158 6.56473 6.77546 6.90380 7.19281 7.43523 7.49365 7.80828 7.84948 7.93672 7.97813 8.45389 9.29761 9.92121 10.43074 11.35870 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.022971 B = 0.002855 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.624873 B = 9805.500646 C =10191.537567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.142 3.858 3 N -0.480 5.480 4 C -0.001 4.001 5 S 0.201 5.799 6 C -0.298 4.298 7 C 0.593 3.407 8 O -0.530 6.530 9 N -0.596 5.596 10 C 0.067 3.933 11 C 0.123 3.877 12 C 0.047 3.953 13 O -0.368 6.368 14 C 0.045 3.955 15 C 0.154 3.846 16 N -0.597 5.597 17 C 0.176 3.824 18 C -0.256 4.256 19 H 0.066 0.934 20 C 0.004 3.996 21 N -0.905 5.905 22 Si 0.902 3.098 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.281 1.281 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.199 0.801 30 H 0.063 0.937 31 H 0.111 0.889 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.055 0.945 36 H 0.042 0.958 37 H 0.047 0.953 38 H 0.022 0.978 39 H 0.057 0.943 40 H 0.042 0.958 41 H 0.033 0.967 42 H 0.036 0.964 43 H -0.009 1.009 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.735 17.474 6.912 19.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.003 3.997 3 N -0.195 5.195 4 C -0.295 4.295 5 S 0.458 5.542 6 C -0.422 4.422 7 C 0.380 3.620 8 O -0.409 6.409 9 N -0.327 5.327 10 C -0.078 4.078 11 C 0.001 3.999 12 C -0.031 4.031 13 O -0.287 6.287 14 C -0.035 4.035 15 C 0.026 3.974 16 N -0.320 5.320 17 C 0.032 3.968 18 C -0.385 4.385 19 H 0.083 0.917 20 C -0.194 4.194 21 N -0.550 5.550 22 Si 0.733 3.267 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.206 1.206 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.113 0.887 29 H 0.216 0.784 30 H 0.081 0.919 31 H 0.129 0.871 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.040 0.960 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.009 0.991 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.266 17.323 7.204 19.044 hybrid contribution -0.921 -0.923 -0.490 1.393 sum -4.187 16.401 6.714 18.210 Atomic orbital electron populations 1.20578 0.86125 1.04049 1.03595 1.20694 0.98669 0.85213 0.95075 1.66220 1.05239 1.31500 1.16506 1.29135 0.95616 1.03727 1.01015 1.84582 1.05114 0.99699 1.64799 1.25499 0.96423 0.99078 1.21200 1.16766 0.85772 0.82491 0.76972 1.90783 1.14764 1.84673 1.50664 1.47573 1.08176 1.06446 1.70545 1.22113 0.80449 1.03462 1.01741 1.21635 1.01062 0.80904 0.96265 1.22765 0.89242 0.99689 0.91397 1.87909 1.29646 1.90280 1.20849 1.23451 1.00430 0.97548 0.82039 1.20881 0.89121 0.92226 0.95184 1.43847 1.40888 1.06660 1.40565 1.20703 0.92667 0.92265 0.91185 1.19208 1.40703 0.83179 0.95453 0.91669 1.25082 1.01482 0.97673 0.95182 1.70067 1.50297 1.29051 1.05576 0.86292 0.77818 0.84475 0.78146 1.21557 1.21757 1.20621 0.90106 0.90897 0.88705 0.78415 0.91889 0.87062 0.91306 0.88776 0.88543 0.92652 0.94024 0.93418 0.95990 0.92503 0.93971 0.94898 0.94514 0.99066 0.93934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 9.59 36.00 0.35 -0.61 16 2 C 0.14 1.78 6.79 -83.90 -0.57 1.21 16 3 N -0.48 -5.70 10.50 -11.54 -0.12 -5.82 16 4 C 0.00 -0.01 12.22 51.75 0.63 0.63 16 5 S 0.20 1.82 18.17 -107.50 -1.95 -0.14 16 6 C -0.30 -3.74 6.23 -37.09 -0.23 -3.97 16 7 C 0.59 8.45 7.60 -12.85 -0.10 8.35 16 8 O -0.53 -8.58 14.01 5.20 0.07 -8.51 16 9 N -0.60 -7.99 2.84 -183.13 -0.52 -8.51 16 10 C 0.07 0.77 8.71 59.84 0.52 1.29 16 11 C 0.12 1.70 5.79 -4.04 -0.02 1.68 16 12 C 0.05 0.75 6.28 37.16 0.23 0.98 16 13 O -0.37 -6.85 8.85 -35.23 -0.31 -7.16 16 14 C 0.04 0.85 6.28 37.16 0.23 1.08 16 15 C 0.15 3.13 6.11 -4.04 -0.02 3.11 16 16 N -0.60 -14.83 2.89 -181.12 -0.52 -15.35 16 17 C 0.18 4.28 8.60 59.85 0.51 4.80 16 18 C -0.26 -6.94 9.66 -15.06 -0.15 -7.09 16 19 H 0.07 1.73 7.83 -52.48 -0.41 1.32 16 20 C 0.00 0.11 5.22 -17.43 -0.09 0.02 16 21 N -0.90 -25.91 10.48 55.49 0.58 -25.32 16 22 Si 0.90 21.67 29.56 -169.99 -5.02 16.64 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.09 1.19 6.26 -51.93 -0.33 0.86 16 29 H 0.20 1.03 8.06 -52.48 -0.42 0.60 16 30 H 0.06 0.60 7.81 -51.93 -0.41 0.19 16 31 H 0.11 1.49 7.26 -51.93 -0.38 1.11 16 32 H 0.07 0.74 4.63 -23.94 -0.11 0.63 16 33 H 0.09 1.29 8.07 -51.93 -0.42 0.87 16 34 H 0.10 1.26 7.41 -51.93 -0.38 0.88 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 1.10 8.04 -51.93 -0.42 0.68 16 40 H 0.04 0.80 7.86 -51.93 -0.41 0.39 16 41 H 0.03 0.86 7.34 -51.93 -0.38 0.48 16 42 H 0.04 0.96 7.27 -51.93 -0.38 0.59 16 43 H -0.01 -0.20 7.84 -51.93 -0.41 -0.60 16 44 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 370.54 15.07 5.58 5.58 Total: -1.00 -32.46 370.54 -7.44 -39.89 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -6.52 Total: -2.79 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: 1.30 Total: 11.48 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.58 Total: -55.00 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.24 Total: -15.67 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -1.95 Total: -0.14 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.46 -7.44 -39.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692090795.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.233 kcal (2) G-P(sol) polarization free energy of solvation -32.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds