Wall clock time and date at job start Tue Mar 31 2020 15:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.30943 * 122.90424 * 2 1 4 4 C 1.29431 * 117.36350 * 180.02562 * 3 2 1 5 5 S 1.70950 * 110.39410 * 359.97438 * 4 3 2 6 6 C 1.35661 * 122.90839 * 180.02562 * 2 1 3 7 7 C 1.46685 * 126.12794 * 359.71494 * 6 2 1 8 8 O 1.21693 * 119.99973 * 351.07494 * 7 6 2 9 9 N 1.34772 * 120.00291 * 171.07474 * 7 6 2 10 10 C 1.46495 * 119.99838 * 0.63810 * 9 7 6 11 11 C 1.46506 * 120.00212 * 180.63780 * 9 7 6 12 12 C 1.52997 * 109.46827 * 89.99956 * 11 9 7 13 13 O 1.42904 * 109.47210 * 65.00335 * 12 11 9 14 14 C 1.42897 * 114.00339 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47516 * 179.97438 * 14 13 12 16 16 N 1.46505 * 109.46836 * 64.99770 * 15 14 13 17 17 C 1.46497 * 120.00155 * 269.99838 * 16 15 14 18 18 C 1.36938 * 119.99917 * 90.00168 * 16 15 14 19 19 H 1.08004 * 119.99699 * 24.71260 * 18 16 15 20 20 C 1.38809 * 120.00241 * 204.71416 * 18 16 15 21 21 N 1.31627 * 119.99685 * 6.50746 * 20 18 16 22 22 Si 1.86799 * 120.00368 * 186.50851 * 20 18 16 23 23 H 1.48493 * 109.47221 * 89.99659 * 22 20 18 24 24 H 1.48501 * 109.46842 * 210.00221 * 22 20 18 25 25 H 1.48500 * 109.46785 * 329.99680 * 22 20 18 26 26 H 1.09007 * 109.47559 * 269.97739 * 1 2 3 27 27 H 1.09003 * 109.47569 * 29.97603 * 1 2 3 28 28 H 1.09000 * 109.47648 * 149.97834 * 1 2 3 29 29 H 1.08003 * 124.80249 * 180.02562 * 4 3 2 30 30 H 1.09006 * 109.47019 * 83.41335 * 10 9 7 31 31 H 1.08999 * 109.47401 * 203.40970 * 10 9 7 32 32 H 1.08997 * 109.47314 * 323.41645 * 10 9 7 33 33 H 1.09000 * 109.47127 * 210.00188 * 11 9 7 34 34 H 1.08996 * 109.46762 * 330.00493 * 11 9 7 35 35 H 1.08995 * 109.47185 * 184.99936 * 12 11 9 36 36 H 1.09001 * 109.47697 * 305.00434 * 12 11 9 37 37 H 1.09001 * 109.47083 * 299.99973 * 14 13 12 38 38 H 1.09001 * 109.47147 * 59.99483 * 14 13 12 39 39 H 1.08995 * 109.47306 * 184.99793 * 15 14 13 40 40 H 1.08998 * 109.47037 * 305.00278 * 15 14 13 41 41 H 1.09005 * 109.46592 * 95.04862 * 17 16 15 42 42 H 1.08995 * 109.47321 * 215.04448 * 17 16 15 43 43 H 1.08999 * 109.46848 * 335.05459 * 17 16 15 44 44 H 0.97000 * 119.99700 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2182 1.0994 0.0000 4 6 3.5065 0.9744 -0.0005 5 16 3.9447 -0.6780 -0.0004 6 6 2.2439 -1.1389 -0.0005 7 6 1.7192 -2.5087 0.0048 8 8 0.5299 -2.7040 0.1737 9 7 2.5540 -3.5509 -0.1774 10 6 3.9876 -3.3166 -0.3668 11 6 2.0277 -4.9182 -0.1861 12 6 1.6420 -5.3071 -1.6147 13 8 2.8148 -5.3482 -2.4303 14 6 2.5639 -5.7030 -3.7916 15 6 3.8828 -5.7150 -4.5670 16 7 4.7476 -6.7752 -4.0431 17 6 5.6772 -6.4880 -2.9480 18 6 4.6869 -8.0347 -4.5772 19 1 4.3380 -8.1757 -5.5896 20 6 5.0737 -9.1301 -3.8175 21 7 5.3762 -8.9753 -2.5459 22 14 5.1649 -10.8240 -4.5997 23 1 6.5256 -11.0410 -5.1532 24 1 4.8767 -11.8588 -3.5743 25 1 4.1647 -10.9187 -5.6933 26 1 -0.3634 -0.0004 1.0277 27 1 -0.3634 0.8902 -0.5135 28 1 -0.3634 -0.8898 -0.5142 29 1 4.2057 1.7976 -0.0002 30 1 4.4688 -3.2039 0.6048 31 1 4.4276 -4.1630 -0.8941 32 1 4.1332 -2.4085 -0.9518 33 1 2.7905 -5.6034 0.1837 34 1 1.1482 -4.9730 0.4554 35 1 1.1691 -6.2890 -1.6088 36 1 0.9458 -4.5708 -2.0164 37 1 2.1097 -6.6931 -3.8312 38 1 1.8869 -4.9746 -4.2381 39 1 3.6821 -5.8982 -5.6225 40 1 4.3797 -4.7515 -4.4534 41 1 5.2139 -6.7560 -1.9984 42 1 6.5894 -7.0690 -3.0839 43 1 5.9199 -5.4254 -2.9467 44 1 5.6462 -9.7409 -2.0149 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692090795.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:23 Heat of formation + Delta-G solvation = -18.650240 kcal Electronic energy + Delta-G solvation = -26256.694515 eV Core-core repulsion = 22529.955005 eV Total energy + Delta-G solvation = -3726.739509 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.48182 -40.34621 -38.93918 -37.23922 -36.48330 -33.51591 -33.01103 -31.62268 -29.84329 -29.09745 -27.77914 -27.54460 -25.91166 -24.82817 -24.37553 -22.15259 -21.85291 -19.65566 -19.52182 -18.74125 -17.81217 -17.62460 -17.16577 -17.02241 -16.84323 -16.49808 -15.83666 -15.78510 -15.26029 -15.07553 -14.96346 -14.66058 -14.50039 -14.18839 -13.98633 -13.89146 -13.47586 -13.43388 -13.23781 -12.99491 -12.92549 -12.70863 -12.61334 -12.45586 -12.31060 -12.26807 -11.99295 -11.77883 -11.68660 -11.14832 -10.61934 -10.59130 -10.43616 -10.39423 -10.05680 -9.55496 -8.67367 -7.75421 -5.24936 -0.74997 0.24000 0.64506 1.39412 1.48243 1.48752 1.56965 1.82727 2.05819 2.53776 2.89097 3.20532 3.37523 3.47953 3.79562 3.98565 4.05349 4.07980 4.17339 4.21216 4.39643 4.46884 4.51273 4.55213 4.60526 4.65865 4.68682 4.75622 4.78204 4.84618 4.87090 5.01449 5.01846 5.18580 5.26953 5.35314 5.46083 5.70406 5.92281 6.16296 6.39687 6.44152 6.62706 6.92141 7.23876 7.95787 8.40565 9.26597 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.022971 B = 0.002855 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.624873 B = 9805.500646 C =10191.537567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.134 3.866 3 N -0.507 5.507 4 C 0.011 3.989 5 S 0.251 5.749 6 C -0.334 4.334 7 C 0.589 3.411 8 O -0.559 6.559 9 N -0.598 5.598 10 C 0.068 3.932 11 C 0.129 3.871 12 C 0.050 3.950 13 O -0.380 6.380 14 C 0.053 3.947 15 C 0.151 3.849 16 N -0.613 5.613 17 C 0.195 3.805 18 C -0.263 4.263 19 H 0.068 0.932 20 C -0.049 4.049 21 N -0.932 5.932 22 Si 0.963 3.037 23 H -0.287 1.287 24 H -0.297 1.297 25 H -0.271 1.271 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.238 0.762 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.051 0.949 36 H 0.041 0.959 37 H 0.021 0.979 38 H 0.050 0.950 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.008 0.992 42 H 0.007 0.993 43 H 0.022 0.978 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.963 19.040 6.502 20.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.005 4.005 3 N -0.222 5.222 4 C -0.282 4.282 5 S 0.508 5.492 6 C -0.457 4.457 7 C 0.378 3.622 8 O -0.440 6.440 9 N -0.329 5.329 10 C -0.076 4.076 11 C 0.006 3.994 12 C -0.028 4.028 13 O -0.300 6.300 14 C -0.026 4.026 15 C 0.024 3.976 16 N -0.336 5.336 17 C 0.050 3.950 18 C -0.394 4.394 19 H 0.086 0.914 20 C -0.244 4.244 21 N -0.578 5.578 22 Si 0.792 3.208 23 H -0.214 1.214 24 H -0.223 1.223 25 H -0.196 1.196 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.254 0.746 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.120 0.880 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.040 0.960 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.027 0.973 42 H 0.026 0.974 43 H 0.041 0.959 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.483 18.910 6.769 20.238 hybrid contribution -1.124 -1.281 -0.378 1.745 sum -3.606 17.629 6.391 19.096 Atomic orbital electron populations 1.20529 0.86174 1.03709 1.03701 1.20875 0.99175 0.85646 0.94798 1.66281 1.06446 1.31233 1.18256 1.29821 0.95297 1.04928 0.98153 1.84285 1.01975 0.99206 1.63691 1.25430 0.98986 0.98095 1.23234 1.17020 0.85481 0.83266 0.76406 1.90756 1.15964 1.85282 1.52020 1.47628 1.08907 1.06024 1.70309 1.22181 0.79357 1.03133 1.02970 1.21536 1.01394 0.81441 0.95002 1.22826 0.88430 0.99477 0.92046 1.87887 1.31056 1.90167 1.20853 1.23218 0.99841 0.97010 0.82571 1.21050 0.89186 0.91668 0.95665 1.44065 1.42038 1.06977 1.40530 1.20394 0.91122 0.93402 0.90082 1.19530 1.39776 0.84376 0.95703 0.91378 1.25783 1.01972 1.00941 0.95744 1.70235 1.51494 1.29451 1.06647 0.85326 0.77816 0.80324 0.77300 1.21379 1.22348 1.19600 0.89788 0.89826 0.90310 0.74598 0.89656 0.88803 0.90416 0.88768 0.87956 0.93091 0.94080 0.96033 0.93187 0.91484 0.92059 0.97319 0.97434 0.95945 0.94564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.86 9.59 71.23 0.68 -1.17 16 2 C 0.13 3.25 6.79 42.09 0.29 3.54 16 3 N -0.51 -11.03 10.50 -190.41 -2.00 -13.03 16 4 C 0.01 0.16 12.22 130.60 1.60 1.76 16 5 S 0.25 3.85 18.17 -56.49 -1.03 2.83 16 6 C -0.33 -7.99 6.23 23.88 0.15 -7.85 16 7 C 0.59 16.59 7.60 86.45 0.66 17.25 16 8 O -0.56 -18.36 14.01 -4.33 -0.06 -18.42 16 9 N -0.60 -15.62 2.84 -851.51 -2.42 -18.03 16 10 C 0.07 1.46 8.71 127.77 1.11 2.57 16 11 C 0.13 3.54 5.79 86.38 0.50 4.04 16 12 C 0.05 1.58 6.28 71.98 0.45 2.03 16 13 O -0.38 -13.94 8.85 -148.98 -1.32 -15.26 16 14 C 0.05 1.95 6.28 71.98 0.45 2.40 16 15 C 0.15 5.89 6.11 86.38 0.53 6.42 16 16 N -0.61 -30.09 2.89 -726.95 -2.10 -32.19 16 17 C 0.19 9.44 8.60 127.77 1.10 10.53 16 18 C -0.26 -14.23 9.66 84.03 0.81 -13.42 16 19 H 0.07 3.57 7.83 -2.91 -0.02 3.54 16 20 C -0.05 -2.72 5.22 84.86 0.44 -2.27 16 21 N -0.93 -54.14 10.48 21.65 0.23 -53.91 16 22 Si 0.96 44.68 29.56 68.60 2.03 46.71 16 23 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 24 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 26 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 27 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.08 2.03 6.26 -2.39 -0.01 2.01 16 29 H 0.24 1.38 8.06 -2.91 -0.02 1.36 16 30 H 0.09 1.44 7.81 -2.38 -0.02 1.42 16 31 H 0.09 2.41 7.26 -2.39 -0.02 2.39 16 32 H 0.08 1.51 4.63 -20.19 -0.09 1.42 16 33 H 0.09 2.58 8.07 -2.39 -0.02 2.57 16 34 H 0.10 2.69 7.41 -2.39 -0.02 2.67 16 35 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.07 2.47 8.04 -2.39 -0.02 2.45 16 40 H 0.06 2.16 7.86 -2.39 -0.02 2.14 16 41 H 0.01 0.45 7.34 -2.38 -0.02 0.43 16 42 H 0.01 0.37 7.27 -2.39 -0.02 0.35 16 43 H 0.02 0.92 7.84 -2.39 -0.02 0.90 16 44 H 0.24 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -69.90 370.54 3.02 -66.88 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 0.91 Total: 8.58 kcal Atomic # 6 Polarization: 17.07 SS G_CDS: 8.77 Total: 25.84 kcal Atomic # 7 Polarization: -110.88 SS G_CDS: -6.29 Total: -117.16 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -1.38 Total: -33.67 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -1.03 Total: 2.83 kcal Total: -69.90 3.02 -66.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692090795.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.233 kcal (2) G-P(sol) polarization free energy of solvation -69.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds