Wall clock time and date at job start Tue Mar 31 2020 15:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32567 * 121.64507 * 2 1 4 4 S 1.77222 * 105.32135 * 180.19177 * 3 2 1 5 5 C 1.72213 * 94.84880 * 359.76191 * 4 3 2 6 6 O 1.21827 * 127.05723 * 180.02562 * 5 4 3 7 7 N 1.34248 * 105.88176 * 0.02562 * 5 4 3 8 8 C 1.46496 * 121.37743 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47238 * 90.02432 * 8 7 5 10 10 C 1.50706 * 109.47348 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99503 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00081 * 179.72561 * 10 9 8 13 13 C 1.46492 * 120.00231 * 359.97438 * 12 10 9 14 14 C 1.46506 * 119.99968 * 180.02562 * 12 10 9 15 15 C 1.52992 * 109.47110 * 89.99382 * 14 12 10 16 16 C 1.53006 * 109.46942 * 179.97438 * 15 14 12 17 17 N 1.46501 * 109.47207 * 179.97438 * 16 15 14 18 18 C 1.36934 * 119.99997 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00199 * 0.02562 * 18 17 16 20 20 C 1.38817 * 120.00016 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99886 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99964 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47104 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47098 * 120.00064 * 22 20 18 25 25 H 1.48499 * 109.46792 * 239.99570 * 22 20 18 26 26 H 1.08994 * 109.47317 * 270.24099 * 1 2 3 27 27 H 1.08994 * 109.47222 * 30.25326 * 1 2 3 28 28 H 1.09008 * 109.46764 * 150.24446 * 1 2 3 29 29 H 1.08002 * 127.34156 * 359.92730 * 3 2 1 30 30 H 1.09000 * 109.47435 * 330.02336 * 8 7 5 31 31 H 1.09002 * 109.46784 * 210.01972 * 8 7 5 32 32 H 1.09001 * 109.47671 * 59.99927 * 9 8 7 33 33 H 1.08998 * 109.47454 * 299.99925 * 9 8 7 34 34 H 1.09001 * 109.47443 * 89.99785 * 13 12 10 35 35 H 1.08999 * 109.47479 * 210.00762 * 13 12 10 36 36 H 1.09006 * 109.47080 * 330.00171 * 13 12 10 37 37 H 1.08995 * 109.47161 * 210.00105 * 14 12 10 38 38 H 1.09002 * 109.46900 * 329.99415 * 14 12 10 39 39 H 1.09003 * 109.47542 * 300.00121 * 15 14 12 40 40 H 1.09002 * 109.47212 * 60.00224 * 15 14 12 41 41 H 1.08998 * 109.47242 * 299.99943 * 16 15 14 42 42 H 1.08997 * 109.47012 * 60.00603 * 16 15 14 43 43 H 0.97001 * 119.99700 * 0.02562 * 17 16 15 44 44 H 0.96999 * 119.99723 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1286 0.0000 4 16 3.9033 0.6305 -0.0057 5 6 3.5607 -1.0572 -0.0006 6 8 4.3675 -1.9701 -0.0013 7 7 2.2222 -1.1604 0.0045 8 6 1.5578 -2.4660 0.0093 9 6 1.3312 -2.9176 1.4535 10 6 0.6471 -4.2605 1.4585 11 8 0.3680 -4.8026 0.4101 12 7 0.3502 -4.8611 2.6278 13 6 0.6928 -4.2090 3.8940 14 6 -0.3143 -6.1668 2.6327 15 6 0.7399 -7.2755 2.6246 16 6 0.0459 -8.6391 2.6303 17 7 1.0553 -9.7009 2.6220 18 6 0.6676 -11.0142 2.6257 19 1 -0.3822 -11.2673 2.6343 20 6 1.6241 -12.0202 2.6183 21 7 2.9036 -11.7118 2.6072 22 14 1.0952 -13.8118 2.6226 23 1 -0.3876 -13.8901 2.6349 24 1 1.6170 -14.4849 1.4061 25 1 1.6361 -14.4845 3.8310 26 1 -0.3633 0.0043 1.0276 27 1 -0.3633 0.8876 -0.5177 28 1 -0.3633 -0.8922 -0.5101 29 1 1.8152 2.1368 -0.0011 30 1 2.1845 -3.1946 -0.5051 31 1 0.5982 -2.3872 -0.5015 32 1 0.7045 -2.1891 1.9679 33 1 2.2908 -2.9964 1.9644 34 1 -0.1376 -3.5803 4.2154 35 1 0.8891 -4.9674 4.6520 36 1 1.5822 -3.5938 3.7569 37 1 -0.9304 -6.2576 3.5272 38 1 -0.9437 -6.2574 1.7474 39 1 1.3560 -7.1847 1.7300 40 1 1.3693 -7.1849 3.5099 41 1 -0.5698 -8.7297 3.5252 42 1 -0.5837 -8.7301 1.7452 43 1 1.9983 -9.4735 2.6146 44 1 3.5719 -12.4148 2.6017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699509655.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:34 Heat of formation + Delta-G solvation = -26.722470 kcal Electronic energy + Delta-G solvation = -25021.802221 eV Core-core repulsion = 21294.712674 eV Total energy + Delta-G solvation = -3727.089547 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.46687 -39.98370 -37.91973 -36.32107 -34.85657 -33.84671 -32.34301 -31.58910 -29.90952 -28.55549 -27.03667 -25.92208 -24.67576 -23.51186 -22.51357 -20.97223 -20.65448 -19.32200 -18.45932 -17.83379 -17.04502 -16.80510 -16.68488 -16.11759 -15.91277 -15.34963 -14.77502 -14.57115 -14.46052 -14.18716 -14.14877 -14.03232 -13.66517 -13.26636 -13.18105 -13.02994 -12.98963 -12.74753 -12.56355 -11.98716 -11.94873 -11.77190 -11.61702 -11.50389 -10.92944 -10.84948 -10.73785 -10.41551 -10.39895 -10.11808 -10.01624 -9.84102 -9.69477 -8.84724 -8.77367 -8.33750 -6.88891 -5.73051 -3.01965 0.59542 0.98002 1.41471 1.77748 2.30784 2.43579 2.88959 3.45679 3.50663 3.53499 3.98789 4.28028 4.31027 4.40165 4.58514 4.62278 4.80475 4.83230 4.91372 4.98898 5.05367 5.09271 5.14111 5.21381 5.25124 5.39395 5.47583 5.50535 5.59207 5.67081 5.71754 5.88616 6.06097 6.29616 6.34268 6.39328 6.45721 6.86706 6.88842 6.96944 7.20232 7.73100 7.98425 8.45724 9.56500 10.15155 10.49607 11.50082 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.022263 B = 0.002027 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.418443 B =13810.801320 C =14476.558070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.104 3.896 3 C -0.241 4.241 4 S -0.003 6.003 5 C 0.479 3.521 6 O -0.465 6.465 7 N -0.533 5.533 8 C 0.114 3.886 9 C -0.155 4.155 10 C 0.517 3.483 11 O -0.533 6.533 12 N -0.613 5.613 13 C 0.075 3.925 14 C 0.119 3.881 15 C -0.140 4.140 16 C 0.157 3.843 17 N -0.734 5.734 18 C -0.238 4.238 19 H 0.071 0.929 20 C -0.017 4.017 21 N -0.934 5.934 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.292 1.292 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.191 0.809 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.018 0.982 42 H 0.020 0.980 43 H 0.383 0.617 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.586 33.298 -1.208 33.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.007 4.007 3 C -0.379 4.379 4 S 0.240 5.760 5 C 0.160 3.840 6 O -0.343 6.343 7 N -0.254 5.254 8 C -0.011 4.011 9 C -0.196 4.196 10 C 0.304 3.696 11 O -0.410 6.410 12 N -0.346 5.346 13 C -0.068 4.068 14 C -0.004 4.004 15 C -0.179 4.179 16 C 0.029 3.971 17 N -0.378 5.378 18 C -0.370 4.370 19 H 0.089 0.911 20 C -0.212 4.212 21 N -0.583 5.583 22 Si 0.740 3.260 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.219 1.219 26 H 0.104 0.896 27 H 0.109 0.891 28 H 0.099 0.901 29 H 0.208 0.792 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.036 0.964 42 H 0.038 0.962 43 H 0.217 0.783 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.148 32.919 -1.767 33.366 hybrid contribution -0.960 -1.629 0.234 1.905 sum -6.108 31.290 -1.533 31.918 Atomic orbital electron populations 1.20834 0.86585 1.04774 1.04103 1.19478 0.95890 0.84904 1.00453 1.24896 0.93224 1.01293 1.18528 1.85237 1.08454 1.01307 1.80980 1.21652 0.83802 0.95737 0.82771 1.91022 1.48500 1.42301 1.52500 1.46164 1.06400 1.07824 1.65023 1.21666 1.00150 0.82379 0.96872 1.21991 1.02984 0.95953 0.98647 1.20232 0.79047 0.86564 0.83742 1.90756 1.53310 1.65996 1.30931 1.47886 1.59971 1.20755 1.05954 1.21848 1.00478 0.98528 0.85968 1.21527 0.95090 0.80516 1.03229 1.22063 0.98536 0.94772 1.02499 1.20535 0.92348 0.86482 0.97763 1.42366 1.04518 1.01434 1.89469 1.19290 0.92390 0.82845 1.42444 0.91081 1.24775 0.95262 0.98080 1.03130 1.69681 0.99066 1.31605 1.57899 0.86090 0.77537 0.85242 0.77176 1.20539 1.21841 1.21883 0.89550 0.89050 0.90150 0.79153 0.87569 0.87744 0.88401 0.88124 0.92429 0.90318 0.91213 0.90376 0.89642 0.91536 0.91995 0.96419 0.96214 0.78311 0.93561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.30 9.70 36.01 0.35 0.05 16 2 C 0.10 0.61 6.59 -82.51 -0.54 0.06 16 3 C -0.24 -1.29 11.24 28.83 0.32 -0.97 16 4 S 0.00 -0.02 22.97 -107.50 -2.47 -2.49 16 5 C 0.48 5.45 8.27 53.82 0.45 5.89 16 6 O -0.46 -7.08 17.55 5.08 0.09 -7.00 16 7 N -0.53 -4.64 2.60 -117.28 -0.31 -4.94 16 8 C 0.11 1.05 4.56 -4.04 -0.02 1.03 16 9 C -0.15 -1.32 4.58 -27.88 -0.13 -1.45 16 10 C 0.52 6.28 7.67 -10.98 -0.08 6.19 16 11 O -0.53 -8.55 15.56 5.56 0.09 -8.47 16 12 N -0.61 -6.89 2.87 -181.58 -0.52 -7.41 16 13 C 0.08 0.56 10.25 59.84 0.61 1.17 16 14 C 0.12 1.57 5.40 -4.04 -0.02 1.55 16 15 C -0.14 -2.39 5.65 -26.73 -0.15 -2.54 16 16 C 0.16 3.29 6.26 -4.04 -0.03 3.26 16 17 N -0.73 -19.65 5.60 -59.91 -0.34 -19.98 16 18 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 19 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 20 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 21 N -0.93 -29.32 13.06 55.49 0.72 -28.59 16 22 Si 0.91 23.04 29.55 -169.99 -5.02 18.02 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 27 H 0.09 0.11 8.10 -51.93 -0.42 -0.31 16 28 H 0.08 0.27 6.18 -51.92 -0.32 -0.05 16 29 H 0.19 0.44 8.06 -52.49 -0.42 0.02 16 30 H 0.11 1.26 7.76 -51.93 -0.40 0.85 16 31 H 0.10 0.80 6.07 -51.93 -0.32 0.48 16 32 H 0.10 0.55 8.11 -51.93 -0.42 0.13 16 33 H 0.10 0.91 7.39 -51.93 -0.38 0.53 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16 36 H 0.07 0.44 6.43 -51.93 -0.33 0.11 16 37 H 0.08 0.86 8.07 -51.93 -0.42 0.45 16 38 H 0.09 1.23 7.42 -51.93 -0.39 0.84 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.38 10.83 7.67 -40.82 -0.31 10.52 16 44 H 0.25 7.67 8.31 -40.82 -0.34 7.34 16 LS Contribution 381.10 15.07 5.74 5.74 Total: -1.00 -37.14 381.10 -8.14 -45.28 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -6.64 Total: 3.29 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 0.51 Total: 6.56 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: -0.44 Total: -60.93 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.18 Total: -15.46 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.47 Total: -2.49 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.14 -8.14 -45.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699509655.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.559 kcal (2) G-P(sol) polarization free energy of solvation -37.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds