Wall clock time and date at job start Tue Mar 31 2020 15:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32567 * 121.64507 * 2 1 4 4 S 1.77222 * 105.32135 * 180.19177 * 3 2 1 5 5 C 1.72213 * 94.84880 * 359.76191 * 4 3 2 6 6 O 1.21827 * 127.05723 * 180.02562 * 5 4 3 7 7 N 1.34248 * 105.88176 * 0.02562 * 5 4 3 8 8 C 1.46496 * 121.37743 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47238 * 90.02432 * 8 7 5 10 10 C 1.50706 * 109.47348 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99503 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00081 * 179.72561 * 10 9 8 13 13 C 1.46492 * 120.00231 * 359.97438 * 12 10 9 14 14 C 1.46506 * 119.99968 * 180.02562 * 12 10 9 15 15 C 1.52992 * 109.47110 * 89.99382 * 14 12 10 16 16 C 1.53006 * 109.46942 * 179.97438 * 15 14 12 17 17 N 1.46501 * 109.47207 * 179.97438 * 16 15 14 18 18 C 1.36934 * 119.99997 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00199 * 0.02562 * 18 17 16 20 20 C 1.38817 * 120.00016 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99886 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99964 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47104 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47098 * 120.00064 * 22 20 18 25 25 H 1.48499 * 109.46792 * 239.99570 * 22 20 18 26 26 H 1.08994 * 109.47317 * 270.24099 * 1 2 3 27 27 H 1.08994 * 109.47222 * 30.25326 * 1 2 3 28 28 H 1.09008 * 109.46764 * 150.24446 * 1 2 3 29 29 H 1.08002 * 127.34156 * 359.92730 * 3 2 1 30 30 H 1.09000 * 109.47435 * 330.02336 * 8 7 5 31 31 H 1.09002 * 109.46784 * 210.01972 * 8 7 5 32 32 H 1.09001 * 109.47671 * 59.99927 * 9 8 7 33 33 H 1.08998 * 109.47454 * 299.99925 * 9 8 7 34 34 H 1.09001 * 109.47443 * 89.99785 * 13 12 10 35 35 H 1.08999 * 109.47479 * 210.00762 * 13 12 10 36 36 H 1.09006 * 109.47080 * 330.00171 * 13 12 10 37 37 H 1.08995 * 109.47161 * 210.00105 * 14 12 10 38 38 H 1.09002 * 109.46900 * 329.99415 * 14 12 10 39 39 H 1.09003 * 109.47542 * 300.00121 * 15 14 12 40 40 H 1.09002 * 109.47212 * 60.00224 * 15 14 12 41 41 H 1.08998 * 109.47242 * 299.99943 * 16 15 14 42 42 H 1.08997 * 109.47012 * 60.00603 * 16 15 14 43 43 H 0.97001 * 119.99700 * 0.02562 * 17 16 15 44 44 H 0.96999 * 119.99723 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1286 0.0000 4 16 3.9033 0.6305 -0.0057 5 6 3.5607 -1.0572 -0.0006 6 8 4.3675 -1.9701 -0.0013 7 7 2.2222 -1.1604 0.0045 8 6 1.5578 -2.4660 0.0093 9 6 1.3312 -2.9176 1.4535 10 6 0.6471 -4.2605 1.4585 11 8 0.3680 -4.8026 0.4101 12 7 0.3502 -4.8611 2.6278 13 6 0.6928 -4.2090 3.8940 14 6 -0.3143 -6.1668 2.6327 15 6 0.7399 -7.2755 2.6246 16 6 0.0459 -8.6391 2.6303 17 7 1.0553 -9.7009 2.6220 18 6 0.6676 -11.0142 2.6257 19 1 -0.3822 -11.2673 2.6343 20 6 1.6241 -12.0202 2.6183 21 7 2.9036 -11.7118 2.6072 22 14 1.0952 -13.8118 2.6226 23 1 -0.3876 -13.8901 2.6349 24 1 1.6170 -14.4849 1.4061 25 1 1.6361 -14.4845 3.8310 26 1 -0.3633 0.0043 1.0276 27 1 -0.3633 0.8876 -0.5177 28 1 -0.3633 -0.8922 -0.5101 29 1 1.8152 2.1368 -0.0011 30 1 2.1845 -3.1946 -0.5051 31 1 0.5982 -2.3872 -0.5015 32 1 0.7045 -2.1891 1.9679 33 1 2.2908 -2.9964 1.9644 34 1 -0.1376 -3.5803 4.2154 35 1 0.8891 -4.9674 4.6520 36 1 1.5822 -3.5938 3.7569 37 1 -0.9304 -6.2576 3.5272 38 1 -0.9437 -6.2574 1.7474 39 1 1.3560 -7.1847 1.7300 40 1 1.3693 -7.1849 3.5099 41 1 -0.5698 -8.7297 3.5252 42 1 -0.5837 -8.7301 1.7452 43 1 1.9983 -9.4735 2.6146 44 1 3.5719 -12.4148 2.6017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699509655.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:33 Heat of formation + Delta-G solvation = -52.787313 kcal Electronic energy + Delta-G solvation = -25022.932478 eV Core-core repulsion = 21294.712674 eV Total energy + Delta-G solvation = -3728.219804 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.16763 -40.93527 -38.73108 -37.62220 -36.45096 -34.65644 -33.97575 -32.36521 -31.49542 -29.19179 -27.97111 -27.00978 -25.85560 -24.67925 -23.77581 -22.52758 -21.35476 -20.23969 -19.19249 -19.06418 -18.64875 -17.62295 -17.55870 -17.03376 -16.90852 -16.47827 -16.14354 -15.84221 -15.50890 -15.26214 -15.19169 -14.73429 -14.63959 -14.51486 -14.28814 -13.83954 -13.78882 -13.58036 -13.41240 -13.13588 -13.10697 -12.81384 -12.76808 -12.42709 -12.39084 -12.28544 -12.05826 -12.05221 -11.85765 -11.82353 -11.25248 -11.00268 -10.98757 -10.60895 -9.73804 -9.06682 -8.97007 -7.99588 -5.30126 -0.14184 0.37260 0.87196 1.10853 1.44213 1.46578 1.48562 1.56874 1.63323 2.05638 2.53213 3.33972 3.37613 3.58057 3.61715 3.77028 3.83629 4.02105 4.16471 4.17737 4.26261 4.32743 4.42335 4.49518 4.55513 4.58557 4.64083 4.69298 4.73078 4.79232 4.80463 4.86372 4.93093 5.02433 5.24814 5.26352 5.31917 5.44956 5.48358 5.73503 6.22392 6.22569 6.30879 7.05555 7.27494 8.02766 8.25795 9.24639 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.022263 B = 0.002027 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.418443 B =13810.801320 C =14476.558070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.091 3.909 3 C -0.220 4.220 4 S -0.003 6.003 5 C 0.457 3.543 6 O -0.525 6.525 7 N -0.528 5.528 8 C 0.117 3.883 9 C -0.139 4.139 10 C 0.511 3.489 11 O -0.581 6.581 12 N -0.612 5.612 13 C 0.068 3.932 14 C 0.128 3.872 15 C -0.124 4.124 16 C 0.155 3.845 17 N -0.751 5.751 18 C -0.248 4.248 19 H 0.080 0.920 20 C -0.082 4.082 21 N -0.973 5.973 22 Si 0.981 3.019 23 H -0.262 1.262 24 H -0.294 1.294 25 H -0.290 1.290 26 H 0.104 0.896 27 H 0.115 0.885 28 H 0.074 0.926 29 H 0.230 0.770 30 H 0.067 0.933 31 H 0.121 0.879 32 H 0.138 0.862 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.110 0.890 38 H 0.072 0.928 39 H 0.033 0.967 40 H 0.064 0.936 41 H 0.036 0.964 42 H 0.016 0.984 43 H 0.371 0.629 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.293 35.796 0.119 36.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.018 4.018 3 C -0.357 4.357 4 S 0.240 5.760 5 C 0.141 3.859 6 O -0.409 6.409 7 N -0.249 5.249 8 C -0.009 4.009 9 C -0.180 4.180 10 C 0.300 3.700 11 O -0.461 6.461 12 N -0.344 5.344 13 C -0.074 4.074 14 C 0.004 3.996 15 C -0.163 4.163 16 C 0.028 3.972 17 N -0.394 5.394 18 C -0.379 4.379 19 H 0.098 0.902 20 C -0.274 4.274 21 N -0.624 5.624 22 Si 0.809 3.191 23 H -0.186 1.186 24 H -0.221 1.221 25 H -0.217 1.217 26 H 0.123 0.877 27 H 0.133 0.867 28 H 0.093 0.907 29 H 0.247 0.753 30 H 0.086 0.914 31 H 0.139 0.861 32 H 0.156 0.844 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.128 0.872 38 H 0.090 0.910 39 H 0.052 0.948 40 H 0.083 0.917 41 H 0.054 0.946 42 H 0.034 0.966 43 H 0.202 0.798 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.931 35.500 -0.406 36.377 hybrid contribution -0.165 -2.255 -0.185 2.269 sum -8.096 33.244 -0.592 34.221 Atomic orbital electron populations 1.20981 0.83790 1.05668 1.05546 1.20042 0.97419 0.83758 1.00570 1.25451 0.90452 1.02765 1.17056 1.85239 1.11528 0.98976 1.80266 1.22102 0.84380 0.96431 0.83026 1.90975 1.50168 1.44417 1.55346 1.46183 1.05791 1.08630 1.64265 1.21546 0.99925 0.82079 0.97309 1.21904 1.02915 0.94723 0.98428 1.20846 0.78416 0.87520 0.83252 1.90735 1.55312 1.67391 1.32700 1.47980 1.59277 1.19899 1.07236 1.22141 1.02351 0.98899 0.83960 1.21329 0.93804 0.80291 1.04133 1.21884 0.99038 0.94428 1.00946 1.20716 0.91568 0.86863 0.98042 1.42649 1.04991 1.02199 1.89525 1.19738 0.92834 0.84103 1.41242 0.90227 1.25713 0.95323 1.02775 1.03568 1.69852 1.00239 1.32796 1.59541 0.84969 0.78020 0.79398 0.76733 1.18648 1.22097 1.21656 0.87720 0.86668 0.90720 0.75311 0.91409 0.86087 0.84376 0.88631 0.89240 0.90297 0.90025 0.87216 0.90971 0.94794 0.91719 0.94591 0.96635 0.79804 0.93941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.18 9.70 71.24 0.69 0.51 16 2 C 0.09 0.82 6.59 40.71 0.27 1.09 16 3 C -0.22 -1.63 11.24 66.67 0.75 -0.88 16 4 S 0.00 -0.05 22.97 -56.49 -1.30 -1.35 16 5 C 0.46 10.83 8.27 129.87 1.07 11.90 16 6 O -0.53 -17.49 17.55 -4.75 -0.08 -17.57 16 7 N -0.53 -8.92 2.60 -643.43 -1.68 -10.59 16 8 C 0.12 2.17 4.56 86.38 0.39 2.56 16 9 C -0.14 -2.23 4.58 29.85 0.14 -2.09 16 10 C 0.51 12.24 7.67 87.66 0.67 12.91 16 11 O -0.58 -19.33 15.56 -3.04 -0.05 -19.38 16 12 N -0.61 -12.89 2.87 -846.77 -2.43 -15.32 16 13 C 0.07 0.82 10.25 127.77 1.31 2.13 16 14 C 0.13 3.23 5.40 86.38 0.47 3.70 16 15 C -0.12 -4.29 5.65 30.59 0.17 -4.12 16 16 C 0.15 6.50 6.26 86.38 0.54 7.04 16 17 N -0.75 -40.98 5.60 -343.44 -1.92 -42.91 16 18 C -0.25 -14.52 9.99 84.04 0.84 -13.68 16 19 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 20 C -0.08 -4.92 5.50 84.86 0.47 -4.46 16 21 N -0.97 -62.50 13.06 21.65 0.28 -62.22 16 22 Si 0.98 47.67 29.55 68.60 2.03 49.69 16 23 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 24 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 25 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 26 H 0.10 -0.14 8.14 -2.39 -0.02 -0.16 16 27 H 0.11 -0.29 8.10 -2.39 -0.02 -0.31 16 28 H 0.07 0.27 6.18 -2.38 -0.01 0.26 16 29 H 0.23 -0.14 8.06 -2.91 -0.02 -0.16 16 30 H 0.07 1.80 7.76 -2.39 -0.02 1.78 16 31 H 0.12 1.80 6.07 -2.39 -0.01 1.79 16 32 H 0.14 1.07 8.11 -2.39 -0.02 1.05 16 33 H 0.10 1.69 7.39 -2.39 -0.02 1.67 16 34 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.08 0.99 8.07 -2.39 -0.02 0.97 16 36 H 0.08 0.81 6.43 -2.38 -0.02 0.80 16 37 H 0.11 2.11 8.07 -2.39 -0.02 2.09 16 38 H 0.07 2.05 7.42 -2.39 -0.02 2.03 16 39 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.37 21.70 7.67 -92.71 -0.71 20.99 16 44 H 0.25 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -85.79 381.10 2.93 -82.86 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 0.30 Total: 20.16 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 7.78 Total: 16.63 kcal Atomic # 7 Polarization: -125.29 SS G_CDS: -5.75 Total: -131.04 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -0.13 Total: -36.96 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.69 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -1.30 Total: -1.35 kcal Total: -85.79 2.93 -82.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699509655.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.070 kcal (2) G-P(sol) polarization free energy of solvation -85.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds