Wall clock time and date at job start Tue Mar 31 2020 15:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34039 * 126.78039 * 2 1 4 4 N 1.20922 * 111.57074 * 179.97438 * 3 2 1 5 5 C 1.30175 * 111.59955 * 359.74627 * 4 3 2 6 6 C 1.35456 * 126.77694 * 179.97438 * 2 1 3 7 7 C 1.50696 * 128.00406 * 359.96934 * 6 2 1 8 8 N 1.46897 * 109.47624 * 79.99698 * 7 6 2 9 9 C 1.46899 * 111.00355 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47043 * 324.99919 * 9 8 7 11 11 C 1.53002 * 109.47394 * 84.99974 * 9 8 7 12 12 C 1.52997 * 109.47254 * 204.99848 * 9 8 7 13 13 C 1.53004 * 109.47236 * 64.99771 * 12 9 8 14 14 N 1.46499 * 109.47194 * 180.02562 * 13 12 9 15 15 C 1.34783 * 119.99833 * 180.02562 * 14 13 12 16 16 O 1.21280 * 120.00013 * 359.97438 * 15 14 13 17 17 C 1.50698 * 119.99711 * 179.97438 * 15 14 13 18 18 S 1.81000 * 109.46704 * 179.97438 * 17 15 14 19 19 C 1.76210 * 99.99828 * 180.02562 * 18 17 15 20 20 H 1.07994 * 119.99512 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99860 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00246 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99953 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46954 * 89.99770 * 23 21 19 25 25 H 1.48494 * 109.47026 * 209.99820 * 23 21 19 26 26 H 1.48501 * 109.47073 * 329.99857 * 23 21 19 27 27 H 1.09011 * 109.46793 * 270.00044 * 1 2 3 28 28 H 1.09001 * 109.46974 * 29.99752 * 1 2 3 29 29 H 1.08993 * 109.47257 * 150.00292 * 1 2 3 30 30 H 1.08007 * 126.79751 * 180.25179 * 5 4 3 31 31 H 1.09006 * 109.47702 * 319.99248 * 7 6 2 32 32 H 1.09006 * 109.47126 * 199.99898 * 7 6 2 33 33 H 1.00901 * 110.99813 * 303.95300 * 8 7 6 34 34 H 1.09002 * 109.47075 * 59.99404 * 11 9 8 35 35 H 1.08996 * 109.47407 * 180.02562 * 11 9 8 36 36 H 1.09000 * 109.46986 * 300.00133 * 11 9 8 37 37 H 1.09001 * 109.47630 * 184.99901 * 12 9 8 38 38 H 1.09004 * 109.47346 * 305.00031 * 12 9 8 39 39 H 1.09001 * 109.46917 * 300.00567 * 13 12 9 40 40 H 1.09004 * 109.46741 * 59.99889 * 13 12 9 41 41 H 0.96997 * 120.00325 * 359.97438 * 14 13 12 42 42 H 1.08993 * 109.47443 * 299.99991 * 17 15 14 43 43 H 1.09004 * 109.46924 * 60.00453 * 17 15 14 44 44 H 0.97002 * 120.00030 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0736 0.0000 4 7 3.4764 0.7563 0.0005 5 6 3.6213 -0.5373 0.0063 6 6 2.3180 -1.0850 0.0005 7 6 1.9224 -2.5391 0.0018 8 7 1.5611 -2.9496 -1.3616 9 6 1.1696 -4.3649 -1.3990 10 1 1.7686 -4.9266 -0.6822 11 6 -0.3116 -4.4942 -1.0381 12 6 1.4023 -4.9215 -2.8051 13 6 2.9000 -4.9073 -3.1178 14 7 3.1227 -5.4397 -4.4644 15 6 4.3744 -5.5236 -4.9573 16 8 5.3161 -5.1580 -4.2863 17 6 4.6035 -6.0718 -6.3422 18 16 6.3752 -6.0548 -6.7121 19 6 6.3541 -6.7265 -8.3411 20 1 5.4160 -7.0044 -8.7983 21 6 7.5431 -6.8993 -9.0359 22 7 8.6865 -6.5610 -8.4783 23 14 7.5207 -7.6106 -10.7631 24 1 7.3926 -6.5089 -11.7505 25 1 8.7835 -8.3519 -11.0095 26 1 6.3680 -8.5365 -10.9021 27 1 -0.3633 0.0000 1.0278 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5137 30 1 4.5528 -1.0840 0.0118 31 1 1.0677 -2.6826 0.6629 32 1 2.7590 -3.1429 0.3534 33 1 0.8304 -2.3620 -1.7345 34 1 -0.9106 -3.9324 -1.7549 35 1 -0.6020 -5.5444 -1.0655 36 1 -0.4774 -4.0977 -0.0364 37 1 1.0299 -5.9446 -2.8572 38 1 0.8736 -4.3049 -3.5320 39 1 3.2723 -3.8842 -3.0657 40 1 3.4287 -5.5239 -2.3908 41 1 2.3696 -5.7324 -5.0009 42 1 4.2308 -7.0947 -6.3944 43 1 4.0751 -5.4549 -7.0691 44 1 9.5174 -6.6815 -8.9641 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700319306.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:00 Heat of formation + Delta-G solvation = 11.388165 kcal Electronic energy + Delta-G solvation = -24367.837851 eV Core-core repulsion = 20642.400905 eV Total energy + Delta-G solvation = -3725.436946 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.19835 -39.17248 -38.18084 -35.46519 -34.17499 -33.44494 -32.39807 -31.57324 -29.95140 -28.30299 -28.03416 -25.93542 -25.45065 -23.22577 -22.87067 -21.24623 -20.91803 -20.10116 -17.90499 -17.80957 -17.45838 -16.28966 -16.17715 -15.89081 -15.63686 -15.15508 -14.89159 -14.77695 -14.57315 -13.97238 -13.82203 -13.74773 -13.63391 -13.40826 -13.20390 -12.98175 -12.89987 -12.58684 -12.38429 -12.18207 -11.87602 -11.60765 -11.39924 -11.34178 -11.12858 -11.03752 -10.99243 -10.73283 -10.56553 -9.78092 -9.56339 -9.31324 -9.04004 -8.85448 -8.68775 -8.18952 -6.45955 -6.18534 -3.88677 1.13036 1.96850 2.77179 3.10650 3.20596 3.24425 3.30305 3.35519 3.77769 3.79414 4.06377 4.22103 4.23482 4.36596 4.47076 4.60125 4.69092 4.83175 4.87041 4.94139 5.06848 5.09483 5.11278 5.16395 5.18148 5.29426 5.31119 5.38404 5.41759 5.46911 5.61439 5.64703 5.71421 5.79427 5.92216 6.01554 6.18952 6.20863 6.56060 6.75804 6.92987 7.62442 7.82290 7.99700 8.38269 8.72604 9.26586 10.88880 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017792 B = 0.001991 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.341365 B =14061.995254 C =15119.457458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.032 4.032 3 O 0.096 5.904 4 N -0.366 5.366 5 C 0.011 3.989 6 C -0.196 4.196 7 C 0.138 3.862 8 N -0.677 5.677 9 C 0.087 3.913 10 H 0.084 0.916 11 C -0.183 4.183 12 C -0.118 4.118 13 C 0.127 3.873 14 N -0.741 5.741 15 C 0.530 3.470 16 O -0.518 6.518 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.192 0.808 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.341 0.659 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.058 0.942 41 H 0.395 0.605 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.084 7.970 19.237 31.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.097 4.097 3 O 0.031 5.969 4 N -0.070 5.070 5 C -0.168 4.168 6 C -0.201 4.201 7 C 0.009 3.991 8 N -0.309 5.309 9 C -0.023 4.023 10 H 0.102 0.898 11 C -0.242 4.242 12 C -0.156 4.156 13 C 0.003 3.997 14 N -0.395 5.395 15 C 0.316 3.684 16 O -0.393 6.393 17 C -0.304 4.304 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.090 0.910 21 C -0.137 4.137 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.209 0.791 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.160 0.840 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.228 0.772 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.784 9.513 20.168 30.483 hybrid contribution -2.534 -1.773 -1.773 3.565 sum -23.318 7.739 18.395 30.692 Atomic orbital electron populations 1.20319 0.84279 1.04510 1.03975 1.24294 0.96127 0.86165 1.03097 1.84817 1.11504 1.33026 1.67554 1.73912 0.96840 1.17009 1.19209 1.24978 0.99953 0.89994 1.01856 1.20976 0.92425 0.96815 1.09846 1.20124 1.00300 0.88738 0.89977 1.60570 1.46469 1.03226 1.20612 1.21523 0.94386 0.88974 0.97468 0.89774 1.22506 0.97220 1.03021 1.01428 1.21778 0.96446 1.00993 0.96424 1.21202 0.94810 1.00244 0.83396 1.46038 1.08517 1.67358 1.17621 1.20267 0.82297 0.77700 0.88139 1.90698 1.41412 1.47040 1.60105 1.23529 1.07967 1.03367 0.95524 1.85408 0.95279 1.83614 1.19178 1.22872 0.95864 1.48635 1.00923 0.90961 1.24998 0.94588 0.95269 0.98806 1.70023 0.97773 1.45014 1.37487 0.86168 0.77715 0.78988 0.82619 1.20284 1.20776 1.19720 0.89459 0.89575 0.89571 0.79116 0.93794 0.89285 0.84011 0.92230 0.91606 0.92634 0.91080 0.91201 0.90357 0.92387 0.77153 0.89356 0.89341 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.24 10.30 36.00 0.37 0.13 16 2 C -0.03 -0.24 7.49 -35.30 -0.26 -0.50 16 3 O 0.10 0.99 11.20 17.18 0.19 1.18 16 4 N -0.37 -4.36 12.07 30.35 0.37 -4.00 16 5 C 0.01 0.11 12.16 -17.06 -0.21 -0.09 16 6 C -0.20 -1.59 5.84 -104.43 -0.61 -2.20 16 7 C 0.14 0.86 5.81 -4.98 -0.03 0.83 16 8 N -0.68 -4.49 5.69 -107.99 -0.61 -5.10 16 9 C 0.09 0.51 2.59 -67.71 -0.18 0.33 16 10 H 0.08 0.52 7.80 -51.93 -0.40 0.12 16 11 C -0.18 -0.75 9.16 37.16 0.34 -0.40 16 12 C -0.12 -0.86 5.00 -26.73 -0.13 -0.99 16 13 C 0.13 1.49 5.56 -4.04 -0.02 1.47 16 14 N -0.74 -10.10 5.56 -60.29 -0.33 -10.43 16 15 C 0.53 10.23 7.85 -10.98 -0.09 10.14 16 16 O -0.52 -12.22 15.86 5.56 0.09 -12.13 16 17 C -0.15 -3.16 6.16 36.00 0.22 -2.94 16 18 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 19 C -0.53 -15.45 9.50 30.94 0.29 -15.15 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.51 13.22 55.49 0.73 -25.78 16 23 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 H 0.09 0.18 8.14 -51.92 -0.42 -0.25 16 28 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 0.18 7.51 -51.93 -0.39 -0.21 16 30 H 0.19 1.66 8.06 -52.48 -0.42 1.24 16 31 H 0.04 0.20 7.44 -51.93 -0.39 -0.18 16 32 H 0.09 0.58 8.06 -51.93 -0.42 0.17 16 33 H 0.34 1.96 7.92 -39.29 -0.31 1.65 16 34 H 0.06 0.23 8.13 -51.93 -0.42 -0.20 16 35 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.05 0.20 7.45 -51.93 -0.39 -0.19 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 1.09 7.75 -51.93 -0.40 0.69 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.40 4.14 8.47 -40.82 -0.35 3.79 16 42 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 43 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 44 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 387.79 15.07 5.84 5.84 Total: -1.00 -36.84 387.79 -8.17 -45.02 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.82 Total: 0.09 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -0.40 Total: -7.39 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 0.15 Total: -45.31 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.28 Total: -10.95 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.84 -8.17 -45.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700319306.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.405 kcal (2) G-P(sol) polarization free energy of solvation -36.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds