Wall clock time and date at job start Tue Mar 31 2020 15:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34039 * 126.78039 * 2 1 4 4 N 1.20922 * 111.57074 * 179.97438 * 3 2 1 5 5 C 1.30175 * 111.59955 * 359.74627 * 4 3 2 6 6 C 1.35456 * 126.77694 * 179.97438 * 2 1 3 7 7 C 1.50696 * 128.00406 * 359.96934 * 6 2 1 8 8 N 1.46897 * 109.47624 * 79.99698 * 7 6 2 9 9 C 1.46899 * 111.00355 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47043 * 324.99919 * 9 8 7 11 11 C 1.53002 * 109.47394 * 84.99974 * 9 8 7 12 12 C 1.52997 * 109.47254 * 204.99848 * 9 8 7 13 13 C 1.53004 * 109.47236 * 64.99771 * 12 9 8 14 14 N 1.46499 * 109.47194 * 180.02562 * 13 12 9 15 15 C 1.34783 * 119.99833 * 180.02562 * 14 13 12 16 16 O 1.21280 * 120.00013 * 359.97438 * 15 14 13 17 17 C 1.50698 * 119.99711 * 179.97438 * 15 14 13 18 18 S 1.81000 * 109.46704 * 179.97438 * 17 15 14 19 19 C 1.76210 * 99.99828 * 180.02562 * 18 17 15 20 20 H 1.07994 * 119.99512 * 359.97438 * 19 18 17 21 21 C 1.38798 * 119.99860 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00246 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99953 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46954 * 89.99770 * 23 21 19 25 25 H 1.48494 * 109.47026 * 209.99820 * 23 21 19 26 26 H 1.48501 * 109.47073 * 329.99857 * 23 21 19 27 27 H 1.09011 * 109.46793 * 270.00044 * 1 2 3 28 28 H 1.09001 * 109.46974 * 29.99752 * 1 2 3 29 29 H 1.08993 * 109.47257 * 150.00292 * 1 2 3 30 30 H 1.08007 * 126.79751 * 180.25179 * 5 4 3 31 31 H 1.09006 * 109.47702 * 319.99248 * 7 6 2 32 32 H 1.09006 * 109.47126 * 199.99898 * 7 6 2 33 33 H 1.00901 * 110.99813 * 303.95300 * 8 7 6 34 34 H 1.09002 * 109.47075 * 59.99404 * 11 9 8 35 35 H 1.08996 * 109.47407 * 180.02562 * 11 9 8 36 36 H 1.09000 * 109.46986 * 300.00133 * 11 9 8 37 37 H 1.09001 * 109.47630 * 184.99901 * 12 9 8 38 38 H 1.09004 * 109.47346 * 305.00031 * 12 9 8 39 39 H 1.09001 * 109.46917 * 300.00567 * 13 12 9 40 40 H 1.09004 * 109.46741 * 59.99889 * 13 12 9 41 41 H 0.96997 * 120.00325 * 359.97438 * 14 13 12 42 42 H 1.08993 * 109.47443 * 299.99991 * 17 15 14 43 43 H 1.09004 * 109.46924 * 60.00453 * 17 15 14 44 44 H 0.97002 * 120.00030 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0736 0.0000 4 7 3.4764 0.7563 0.0005 5 6 3.6213 -0.5373 0.0063 6 6 2.3180 -1.0850 0.0005 7 6 1.9224 -2.5391 0.0018 8 7 1.5611 -2.9496 -1.3616 9 6 1.1696 -4.3649 -1.3990 10 1 1.7686 -4.9266 -0.6822 11 6 -0.3116 -4.4942 -1.0381 12 6 1.4023 -4.9215 -2.8051 13 6 2.9000 -4.9073 -3.1178 14 7 3.1227 -5.4397 -4.4644 15 6 4.3744 -5.5236 -4.9573 16 8 5.3161 -5.1580 -4.2863 17 6 4.6035 -6.0718 -6.3422 18 16 6.3752 -6.0548 -6.7121 19 6 6.3541 -6.7265 -8.3411 20 1 5.4160 -7.0044 -8.7983 21 6 7.5431 -6.8993 -9.0359 22 7 8.6865 -6.5610 -8.4783 23 14 7.5207 -7.6106 -10.7631 24 1 7.3926 -6.5089 -11.7505 25 1 8.7835 -8.3519 -11.0095 26 1 6.3680 -8.5365 -10.9021 27 1 -0.3633 0.0000 1.0278 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5137 30 1 4.5528 -1.0840 0.0118 31 1 1.0677 -2.6826 0.6629 32 1 2.7590 -3.1429 0.3534 33 1 0.8304 -2.3620 -1.7345 34 1 -0.9106 -3.9324 -1.7549 35 1 -0.6020 -5.5444 -1.0655 36 1 -0.4774 -4.0977 -0.0364 37 1 1.0299 -5.9446 -2.8572 38 1 0.8736 -4.3049 -3.5320 39 1 3.2723 -3.8842 -3.0657 40 1 3.4287 -5.5239 -2.3908 41 1 2.3696 -5.7324 -5.0009 42 1 4.2308 -7.0947 -6.3944 43 1 4.0751 -5.4549 -7.0691 44 1 9.5174 -6.6815 -8.9641 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700319306.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:59 Heat of formation + Delta-G solvation = -15.875860 kcal Electronic energy + Delta-G solvation = -24369.020108 eV Core-core repulsion = 20642.400905 eV Total energy + Delta-G solvation = -3726.619203 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.92790 -40.57255 -38.82316 -36.33937 -35.15426 -34.58137 -34.08784 -32.39492 -31.07830 -29.12377 -28.68001 -27.64793 -26.49305 -24.08814 -23.54331 -22.03278 -21.60154 -21.28972 -19.81162 -18.64826 -18.14119 -17.73162 -17.16479 -16.92452 -16.87617 -16.38665 -16.18406 -15.83825 -15.51694 -15.19086 -14.75915 -14.68724 -14.46579 -14.11319 -13.98961 -13.79826 -13.72710 -13.48174 -13.21405 -13.16297 -13.00859 -12.88930 -12.62846 -12.57298 -12.22155 -12.12324 -12.04602 -11.71233 -11.70078 -11.29826 -11.14103 -10.90900 -10.26818 -10.16020 -10.03307 -9.24952 -8.66815 -8.34261 -6.12703 0.51412 1.24916 1.28004 1.42882 1.48120 1.58587 1.65960 2.23386 2.27349 2.37121 2.99662 3.27832 3.33610 3.44573 3.69891 3.82434 3.91735 3.99098 4.14478 4.21669 4.27872 4.33510 4.47912 4.51634 4.55391 4.61082 4.65626 4.69953 4.78052 4.79359 4.82331 4.97159 5.02230 5.09502 5.22311 5.25651 5.29206 5.38191 5.41920 5.55258 6.10238 6.20147 6.52445 6.58434 7.06673 7.30740 7.31371 8.75037 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017792 B = 0.001991 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.341365 B =14061.995254 C =15119.457458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.023 4.023 3 O 0.081 5.919 4 N -0.404 5.404 5 C -0.008 4.008 6 C -0.205 4.205 7 C 0.145 3.855 8 N -0.693 5.693 9 C 0.090 3.910 10 H 0.079 0.921 11 C -0.175 4.175 12 C -0.106 4.106 13 C 0.129 3.871 14 N -0.713 5.713 15 C 0.529 3.471 16 O -0.570 6.570 17 C -0.128 4.128 18 S -0.157 6.157 19 C -0.545 4.545 20 H 0.084 0.916 21 C 0.011 3.989 22 N -0.912 5.912 23 Si 1.001 2.999 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.257 1.257 27 H 0.106 0.894 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.194 0.806 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.347 0.653 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.055 0.945 40 H 0.046 0.954 41 H 0.415 0.585 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.994 6.874 18.588 34.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.088 4.088 3 O 0.019 5.981 4 N -0.110 5.110 5 C -0.186 4.186 6 C -0.209 4.209 7 C 0.016 3.984 8 N -0.325 5.325 9 C -0.020 4.020 10 H 0.097 0.903 11 C -0.233 4.233 12 C -0.145 4.145 13 C 0.005 3.995 14 N -0.367 5.367 15 C 0.315 3.685 16 O -0.449 6.449 17 C -0.279 4.279 18 S 0.070 5.930 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.194 4.194 22 N -0.549 5.549 23 Si 0.822 3.178 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.180 1.180 27 H 0.124 0.876 28 H 0.114 0.886 29 H 0.123 0.877 30 H 0.211 0.789 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.167 0.833 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.252 0.748 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -24.781 8.413 19.527 32.653 hybrid contribution -1.426 -1.402 -1.479 2.487 sum -26.207 7.011 18.049 32.584 Atomic orbital electron populations 1.20577 0.80976 1.05885 1.05569 1.25072 0.97725 0.85065 1.00951 1.84759 1.11388 1.34194 1.67804 1.73895 0.97973 1.17956 1.21178 1.25289 1.01351 0.90033 1.01922 1.21203 0.91463 0.98066 1.10192 1.20091 1.00864 0.87188 0.90281 1.60503 1.47180 1.03833 1.21034 1.21477 0.95889 0.88333 0.96318 0.90276 1.22414 0.95313 1.03489 1.02120 1.21748 0.92607 1.02484 0.97637 1.21312 0.98099 0.98380 0.81694 1.45816 1.07117 1.65360 1.18392 1.20100 0.83477 0.77494 0.87445 1.90687 1.43438 1.49609 1.61144 1.23371 1.02247 1.05326 0.97004 1.85624 1.02902 1.84125 1.20328 1.23205 0.96625 1.48595 1.00838 0.89815 1.26172 0.93970 0.95422 1.03817 1.70195 0.98655 1.46377 1.39646 0.84924 0.78258 0.78407 0.76195 1.19327 1.20321 1.18041 0.87569 0.88635 0.87698 0.78942 0.91378 0.90160 0.83299 0.91463 0.91252 0.91746 0.89314 0.90226 0.92616 0.93606 0.74774 0.87124 0.87313 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.28 10.30 71.24 0.73 0.46 16 2 C -0.02 -0.33 7.49 25.04 0.19 -0.14 16 3 O 0.08 1.71 11.20 71.65 0.80 2.51 16 4 N -0.40 -10.17 12.07 -59.28 -0.72 -10.88 16 5 C -0.01 -0.17 12.16 85.71 1.04 0.88 16 6 C -0.20 -3.23 5.84 -19.74 -0.12 -3.35 16 7 C 0.14 1.59 5.81 85.56 0.50 2.09 16 8 N -0.69 -7.89 5.69 -495.58 -2.82 -10.71 16 9 C 0.09 0.82 2.59 44.92 0.12 0.94 16 10 H 0.08 0.83 7.80 -2.39 -0.02 0.81 16 11 C -0.17 -0.76 9.16 71.98 0.66 -0.11 16 12 C -0.11 -1.24 5.00 30.59 0.15 -1.09 16 13 C 0.13 2.88 5.56 86.38 0.48 3.36 16 14 N -0.71 -18.18 5.56 -463.05 -2.57 -20.76 16 15 C 0.53 20.23 7.85 87.66 0.69 20.92 16 16 O -0.57 -27.70 15.86 -3.03 -0.05 -27.75 16 17 C -0.13 -5.19 6.16 71.24 0.44 -4.75 16 18 S -0.16 -8.93 20.57 -56.49 -1.16 -10.09 16 19 C -0.54 -31.53 9.50 67.95 0.65 -30.89 16 20 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 21 C 0.01 0.62 5.49 84.86 0.47 1.08 16 22 N -0.91 -56.94 13.22 21.65 0.29 -56.65 16 23 Si 1.00 44.02 29.55 68.60 2.03 46.04 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 25 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 26 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 27 H 0.11 0.07 8.14 -2.38 -0.02 0.05 16 28 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.10 0.04 7.51 -2.39 -0.02 0.02 16 30 H 0.19 3.76 8.06 -2.91 -0.02 3.74 16 31 H 0.07 0.43 7.44 -2.38 -0.02 0.41 16 32 H 0.08 1.02 8.06 -2.38 -0.02 1.00 16 33 H 0.35 3.08 7.92 -89.69 -0.71 2.37 16 34 H 0.07 0.22 8.13 -2.39 -0.02 0.20 16 35 H 0.07 0.29 8.14 -2.39 -0.02 0.28 16 36 H 0.06 0.20 7.45 -2.39 -0.02 0.19 16 37 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.06 1.55 7.75 -2.39 -0.02 1.53 16 40 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.42 7.35 8.47 -92.71 -0.79 6.57 16 42 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 43 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 44 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -84.52 387.79 1.31 -83.20 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -0.48 Total: 15.68 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: 5.99 Total: -10.60 kcal Atomic # 7 Polarization: -93.18 SS G_CDS: -5.82 Total: -99.00 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: 0.75 Total: -25.24 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: -8.93 SS G_CDS: -1.16 Total: -10.09 kcal Total: -84.52 1.31 -83.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700319306.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.325 kcal (2) G-P(sol) polarization free energy of solvation -84.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds