Wall clock time and date at job start Tue Mar 31 2020 15:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99915 * 2 1 4 4 C 1.50700 * 109.47198 * 180.02562 * 3 2 1 5 5 N 1.29424 * 124.80759 * 89.97841 * 4 3 2 6 6 C 1.30939 * 117.36882 * 180.02562 * 5 4 3 7 7 C 1.50693 * 122.90730 * 179.97438 * 6 5 4 8 8 C 1.35665 * 114.18955 * 359.97438 * 6 5 4 9 9 C 1.46682 * 126.13248 * 180.02562 * 8 6 5 10 10 O 1.21693 * 119.99805 * 0.02562 * 9 8 6 11 11 N 1.34777 * 120.00182 * 180.02562 * 9 8 6 12 12 C 1.46498 * 119.99828 * 180.27909 * 11 9 8 13 13 C 1.52996 * 109.47059 * 179.72339 * 12 11 9 14 14 C 1.53003 * 109.47301 * 179.97438 * 13 12 11 15 15 H 1.08992 * 109.47039 * 305.00167 * 14 13 12 16 16 C 1.53001 * 109.46949 * 184.99469 * 14 13 12 17 17 N 1.46503 * 109.46803 * 64.99966 * 14 13 12 18 18 C 1.36938 * 119.99628 * 204.99730 * 17 14 13 19 19 H 1.08001 * 120.00307 * 0.02562 * 18 17 14 20 20 C 1.38816 * 120.00044 * 179.97438 * 18 17 14 21 21 N 1.31623 * 119.99872 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00148 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47124 * 90.00294 * 22 20 18 24 24 H 1.48499 * 109.47184 * 210.00449 * 22 20 18 25 25 H 1.48506 * 109.47331 * 330.00450 * 22 20 18 26 26 S 1.70957 * 124.80392 * 270.33568 * 4 3 2 27 27 H 1.08997 * 109.46955 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47132 * 299.99557 * 1 2 3 29 29 H 1.08994 * 109.47460 * 59.99681 * 1 2 3 30 30 H 1.09005 * 109.46726 * 60.00425 * 3 2 1 31 31 H 1.08994 * 109.47749 * 300.00735 * 3 2 1 32 32 H 1.08999 * 109.47671 * 269.99856 * 7 6 5 33 33 H 1.09004 * 109.47165 * 30.00050 * 7 6 5 34 34 H 1.08998 * 109.47154 * 149.99504 * 7 6 5 35 35 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 36 36 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 37 37 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 38 38 H 1.09004 * 109.47066 * 299.99732 * 13 12 11 39 39 H 1.09000 * 109.47665 * 59.99541 * 13 12 11 40 40 H 1.09008 * 109.46576 * 179.97438 * 16 14 13 41 41 H 1.08992 * 109.47820 * 300.00220 * 16 14 13 42 42 H 1.09003 * 109.46585 * 60.00658 * 16 14 13 43 43 H 0.97002 * 120.00479 * 25.00003 * 17 14 13 44 44 H 0.96990 * 120.00063 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2485 1.1280 -1.0636 6 6 5.5429 1.0250 -0.8946 7 6 6.5149 0.9472 -2.0436 8 6 5.9333 0.9945 0.4043 9 6 7.3129 0.8854 0.8905 10 8 8.2334 0.8128 0.0978 11 7 7.5610 0.8656 2.2151 12 6 8.9394 0.7628 2.7006 13 6 8.9429 0.7679 4.2305 14 6 10.3824 0.6599 4.7376 15 1 10.8548 -0.2218 4.3049 16 6 10.3780 0.5397 6.2629 17 7 11.1297 1.8571 4.3443 18 6 12.4916 1.8014 4.2126 19 1 13.0147 0.8749 4.3983 20 6 13.1998 2.9355 3.8394 21 7 12.5623 4.0645 3.6126 22 14 15.0574 2.8594 3.6590 23 1 15.4045 2.4867 2.2641 24 1 15.6404 4.1879 3.9761 25 1 15.6044 1.8431 4.5936 26 16 4.4852 1.1010 1.4027 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6886 1.8463 0.8901 31 1 1.6886 1.8465 -0.8898 32 1 6.6678 -0.0960 -2.3202 33 1 6.1136 1.4942 -2.8967 34 1 7.4664 1.3871 -1.7449 35 1 6.8273 0.9239 2.8468 36 1 9.3836 -0.1647 2.3393 37 1 9.5182 1.6101 2.3331 38 1 8.4987 1.6955 4.5918 39 1 8.3640 -0.0793 4.5981 40 1 11.4036 0.4623 6.6241 41 1 9.9056 1.4214 6.6956 42 1 9.8220 -0.3510 6.5555 43 1 10.6599 2.6891 4.1772 44 1 13.0571 4.8570 3.3522 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714499023.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:51 Heat of formation + Delta-G solvation = -31.595618 kcal Electronic energy + Delta-G solvation = -24727.886516 eV Core-core repulsion = 21000.585654 eV Total energy + Delta-G solvation = -3727.300863 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.56633 -39.25258 -38.22508 -36.60192 -34.46978 -32.69866 -32.26867 -29.80323 -29.15315 -28.56733 -27.56741 -26.51947 -23.97640 -23.17961 -22.92980 -21.41908 -20.19126 -19.37351 -18.31378 -17.31517 -17.12071 -17.00117 -16.25767 -15.90969 -15.66062 -15.26144 -15.02226 -14.48405 -14.20327 -13.94602 -13.86207 -13.50214 -13.24380 -12.96103 -12.86040 -12.65269 -12.52059 -12.47013 -12.04336 -11.91764 -11.57868 -11.53519 -11.11802 -10.92534 -10.74252 -10.64131 -10.40118 -10.29043 -10.15131 -10.00855 -9.77813 -9.75120 -9.62803 -9.11586 -8.92243 -8.84184 -6.94425 -5.73971 -3.02747 -0.08169 0.85022 1.27167 2.14751 3.08266 3.11168 3.26307 3.46489 3.51560 3.52807 3.84141 4.37947 4.61930 4.69810 4.72308 4.78515 4.84430 4.89294 4.95111 5.18954 5.26553 5.37636 5.55339 5.56856 5.63539 5.66338 5.76086 5.86108 6.04734 6.16230 6.20887 6.32772 6.37953 6.43933 6.47612 6.60905 6.68119 6.85793 7.05740 7.31150 7.49484 7.73194 8.16948 8.44291 9.55720 10.12005 10.46592 11.48616 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.020504 B = 0.002328 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.282830 B =12026.678796 C =12893.935154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.139 3.861 4 C 0.050 3.950 5 N -0.457 5.457 6 C 0.144 3.856 7 C -0.090 4.090 8 C -0.286 4.286 9 C 0.591 3.409 10 O -0.514 6.514 11 N -0.721 5.721 12 C 0.122 3.878 13 C -0.133 4.133 14 C 0.175 3.825 15 H 0.050 0.950 16 C -0.163 4.163 17 N -0.723 5.723 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.283 1.283 26 S 0.185 5.815 27 H 0.091 0.909 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.393 0.607 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.054 0.946 41 H 0.046 0.954 42 H 0.035 0.965 43 H 0.383 0.617 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.152 -6.966 -4.606 27.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.059 3.941 4 C -0.226 4.226 5 N -0.174 5.174 6 C 0.006 3.994 7 C -0.149 4.149 8 C -0.410 4.410 9 C 0.375 3.625 10 O -0.392 6.392 11 N -0.372 5.372 12 C 0.000 4.000 13 C -0.172 4.172 14 C 0.064 3.936 15 H 0.068 0.932 16 C -0.223 4.223 17 N -0.365 5.365 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.219 1.219 25 H -0.208 1.208 26 S 0.442 5.558 27 H 0.110 0.890 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.122 0.878 35 H 0.227 0.773 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.217 0.783 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -25.688 -7.201 -4.557 27.065 hybrid contribution 0.768 0.547 -0.427 1.035 sum -24.920 -6.653 -4.984 26.270 Atomic orbital electron populations 1.22824 0.79777 1.03452 1.00442 1.87969 1.20478 1.26112 1.95550 1.20830 0.84242 0.86235 1.02826 1.26779 1.00442 1.03660 0.91724 1.66014 1.04639 1.15427 1.31284 1.20686 0.89625 0.95150 0.93905 1.20695 0.97260 1.03629 0.93332 1.25712 0.98361 1.19584 0.97320 1.16633 0.85629 0.77319 0.82891 1.90832 1.44119 1.49504 1.54709 1.46034 1.10671 1.74636 1.05839 1.21546 0.80238 1.03729 0.94461 1.22080 0.99631 1.01832 0.93678 1.20148 0.89067 0.91959 0.92408 0.93204 1.22424 1.01317 0.99364 0.99244 1.42454 1.04277 1.07830 1.81988 1.19216 0.83278 0.95663 1.38718 0.91196 1.24733 0.97874 0.95834 1.02506 1.69652 1.34430 1.00412 1.53578 0.86214 0.85698 0.76615 0.77803 1.21704 1.21880 1.20835 1.83746 0.96542 1.64597 1.10902 0.89015 0.93557 0.93502 0.90503 0.89694 0.89991 0.90712 0.87796 0.77329 0.91357 0.89280 0.91524 0.91838 0.92679 0.93513 0.94566 0.78293 0.93565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.38 -3.34 10.69 -35.23 -0.38 -3.71 16 3 C 0.14 1.04 6.51 36.01 0.23 1.28 16 4 C 0.05 0.53 7.02 -13.29 -0.09 0.43 16 5 N -0.46 -5.90 10.50 -7.71 -0.08 -5.98 16 6 C 0.14 1.96 6.79 -83.90 -0.57 1.39 16 7 C -0.09 -1.13 9.70 36.00 0.35 -0.78 16 8 C -0.29 -3.84 6.48 -37.09 -0.24 -4.08 16 9 C 0.59 9.27 7.78 -12.85 -0.10 9.17 16 10 O -0.51 -9.75 14.27 5.20 0.07 -9.67 16 11 N -0.72 -10.12 5.55 -61.62 -0.34 -10.46 16 12 C 0.12 2.01 5.56 -4.04 -0.02 1.99 16 13 C -0.13 -2.01 4.87 -26.73 -0.13 -2.14 16 14 C 0.17 3.29 2.89 -67.93 -0.20 3.10 16 15 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 16 C -0.16 -2.81 9.49 37.16 0.35 -2.46 16 17 N -0.72 -17.52 4.57 -53.42 -0.24 -17.77 16 18 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -28.18 13.06 55.49 0.72 -27.45 16 22 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 S 0.19 1.83 22.31 -107.50 -2.40 -0.57 16 27 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.05 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.10 1.48 6.01 -51.93 -0.31 1.17 16 35 H 0.39 4.38 7.66 -40.82 -0.31 4.07 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.09 1.81 7.75 -51.93 -0.40 1.41 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 1.04 8.14 -51.92 -0.42 0.61 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.38 9.92 7.80 -40.82 -0.32 9.60 16 44 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 384.61 15.07 5.80 5.80 Total: -1.00 -33.67 384.61 -8.23 -41.90 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -6.81 Total: 8.31 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: 0.45 Total: 2.02 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: 0.06 Total: -61.66 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.30 Total: -13.39 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.40 Total: -0.57 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.67 -8.23 -41.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714499023.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.305 kcal (2) G-P(sol) polarization free energy of solvation -33.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds