Wall clock time and date at job start Tue Mar 31 2020 15:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99915 * 2 1 4 4 C 1.50700 * 109.47198 * 180.02562 * 3 2 1 5 5 N 1.29424 * 124.80759 * 89.97841 * 4 3 2 6 6 C 1.30939 * 117.36882 * 180.02562 * 5 4 3 7 7 C 1.50693 * 122.90730 * 179.97438 * 6 5 4 8 8 C 1.35665 * 114.18955 * 359.97438 * 6 5 4 9 9 C 1.46682 * 126.13248 * 180.02562 * 8 6 5 10 10 O 1.21693 * 119.99805 * 0.02562 * 9 8 6 11 11 N 1.34777 * 120.00182 * 180.02562 * 9 8 6 12 12 C 1.46498 * 119.99828 * 180.27909 * 11 9 8 13 13 C 1.52996 * 109.47059 * 179.72339 * 12 11 9 14 14 C 1.53003 * 109.47301 * 179.97438 * 13 12 11 15 15 H 1.08992 * 109.47039 * 305.00167 * 14 13 12 16 16 C 1.53001 * 109.46949 * 184.99469 * 14 13 12 17 17 N 1.46503 * 109.46803 * 64.99966 * 14 13 12 18 18 C 1.36938 * 119.99628 * 204.99730 * 17 14 13 19 19 H 1.08001 * 120.00307 * 0.02562 * 18 17 14 20 20 C 1.38816 * 120.00044 * 179.97438 * 18 17 14 21 21 N 1.31623 * 119.99872 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00148 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47124 * 90.00294 * 22 20 18 24 24 H 1.48499 * 109.47184 * 210.00449 * 22 20 18 25 25 H 1.48506 * 109.47331 * 330.00450 * 22 20 18 26 26 S 1.70957 * 124.80392 * 270.33568 * 4 3 2 27 27 H 1.08997 * 109.46955 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47132 * 299.99557 * 1 2 3 29 29 H 1.08994 * 109.47460 * 59.99681 * 1 2 3 30 30 H 1.09005 * 109.46726 * 60.00425 * 3 2 1 31 31 H 1.08994 * 109.47749 * 300.00735 * 3 2 1 32 32 H 1.08999 * 109.47671 * 269.99856 * 7 6 5 33 33 H 1.09004 * 109.47165 * 30.00050 * 7 6 5 34 34 H 1.08998 * 109.47154 * 149.99504 * 7 6 5 35 35 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 36 36 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 37 37 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 38 38 H 1.09004 * 109.47066 * 299.99732 * 13 12 11 39 39 H 1.09000 * 109.47665 * 59.99541 * 13 12 11 40 40 H 1.09008 * 109.46576 * 179.97438 * 16 14 13 41 41 H 1.08992 * 109.47820 * 300.00220 * 16 14 13 42 42 H 1.09003 * 109.46585 * 60.00658 * 16 14 13 43 43 H 0.97002 * 120.00479 * 25.00003 * 17 14 13 44 44 H 0.96990 * 120.00063 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2485 1.1280 -1.0636 6 6 5.5429 1.0250 -0.8946 7 6 6.5149 0.9472 -2.0436 8 6 5.9333 0.9945 0.4043 9 6 7.3129 0.8854 0.8905 10 8 8.2334 0.8128 0.0978 11 7 7.5610 0.8656 2.2151 12 6 8.9394 0.7628 2.7006 13 6 8.9429 0.7679 4.2305 14 6 10.3824 0.6599 4.7376 15 1 10.8548 -0.2218 4.3049 16 6 10.3780 0.5397 6.2629 17 7 11.1297 1.8571 4.3443 18 6 12.4916 1.8014 4.2126 19 1 13.0147 0.8749 4.3983 20 6 13.1998 2.9355 3.8394 21 7 12.5623 4.0645 3.6126 22 14 15.0574 2.8594 3.6590 23 1 15.4045 2.4867 2.2641 24 1 15.6404 4.1879 3.9761 25 1 15.6044 1.8431 4.5936 26 16 4.4852 1.1010 1.4027 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6886 1.8463 0.8901 31 1 1.6886 1.8465 -0.8898 32 1 6.6678 -0.0960 -2.3202 33 1 6.1136 1.4942 -2.8967 34 1 7.4664 1.3871 -1.7449 35 1 6.8273 0.9239 2.8468 36 1 9.3836 -0.1647 2.3393 37 1 9.5182 1.6101 2.3331 38 1 8.4987 1.6955 4.5918 39 1 8.3640 -0.0793 4.5981 40 1 11.4036 0.4623 6.6241 41 1 9.9056 1.4214 6.6956 42 1 9.8220 -0.3510 6.5555 43 1 10.6599 2.6891 4.1772 44 1 13.0571 4.8570 3.3522 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714499023.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:50 Heat of formation + Delta-G solvation = -56.761258 kcal Electronic energy + Delta-G solvation = -24728.977781 eV Core-core repulsion = 21000.585654 eV Total energy + Delta-G solvation = -3728.392127 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.57140 -40.37598 -38.80948 -38.13295 -35.95314 -34.17896 -33.55847 -31.33142 -30.13093 -29.83853 -28.73928 -26.97390 -25.86383 -24.46875 -23.84376 -22.63477 -21.58476 -20.58818 -19.30152 -19.16433 -18.10813 -17.65407 -17.17305 -16.96578 -16.63186 -16.54689 -16.17564 -15.91266 -15.40744 -15.33281 -15.24157 -14.88640 -14.45096 -14.14152 -13.96408 -13.62182 -13.54657 -13.35855 -13.28286 -13.23985 -12.83367 -12.62690 -12.48504 -12.36103 -12.30312 -12.23831 -12.10373 -11.65652 -11.59574 -11.28525 -10.94920 -10.87106 -10.76898 -10.70768 -10.23369 -9.90879 -8.96571 -7.91521 -5.18035 -1.00538 -0.00749 0.37422 1.18106 1.46482 1.48590 1.55829 1.93573 1.97581 2.56112 2.57957 3.18295 3.42689 3.63128 3.71397 3.89608 3.93950 3.99975 4.15636 4.22169 4.32619 4.35615 4.53959 4.59524 4.60692 4.64805 4.67453 4.75372 4.80110 4.88579 4.91097 5.01444 5.07486 5.17033 5.24872 5.35285 5.40460 5.55618 5.62794 6.03485 6.29477 6.31516 6.46706 7.00208 7.37600 8.15534 8.36682 9.31927 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.020504 B = 0.002328 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.282830 B =12026.678796 C =12893.935154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.135 3.865 4 C 0.048 3.952 5 N -0.482 5.482 6 C 0.137 3.863 7 C -0.088 4.088 8 C -0.321 4.321 9 C 0.589 3.411 10 O -0.558 6.558 11 N -0.708 5.708 12 C 0.134 3.866 13 C -0.118 4.118 14 C 0.164 3.836 15 H 0.044 0.956 16 C -0.153 4.153 17 N -0.735 5.735 18 C -0.231 4.231 19 H 0.074 0.926 20 C -0.080 4.080 21 N -0.969 5.969 22 Si 0.966 3.034 23 H -0.293 1.293 24 H -0.297 1.297 25 H -0.268 1.268 26 S 0.257 5.743 27 H 0.097 0.903 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.410 0.590 36 H 0.059 0.941 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.106 0.894 40 H 0.032 0.968 41 H 0.045 0.955 42 H 0.075 0.925 43 H 0.372 0.628 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.758 -8.128 -3.130 30.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C 0.055 3.945 4 C -0.227 4.227 5 N -0.199 5.199 6 C -0.002 4.002 7 C -0.147 4.147 8 C -0.446 4.446 9 C 0.375 3.625 10 O -0.438 6.438 11 N -0.359 5.359 12 C 0.010 3.990 13 C -0.156 4.156 14 C 0.056 3.944 15 H 0.062 0.938 16 C -0.213 4.213 17 N -0.375 5.375 18 C -0.363 4.363 19 H 0.092 0.908 20 C -0.272 4.272 21 N -0.621 5.621 22 Si 0.796 3.204 23 H -0.220 1.220 24 H -0.224 1.224 25 H -0.193 1.193 26 S 0.515 5.485 27 H 0.115 0.885 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.127 0.873 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.247 0.753 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.092 0.908 39 H 0.124 0.876 40 H 0.052 0.948 41 H 0.064 0.936 42 H 0.094 0.906 43 H 0.204 0.796 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -28.351 -8.415 -3.017 29.727 hybrid contribution 1.400 0.821 -0.862 1.837 sum -26.952 -7.594 -3.879 28.268 Atomic orbital electron populations 1.23029 0.77852 1.04348 1.01788 1.87916 1.22590 1.26664 1.95843 1.21086 0.82080 0.86395 1.04904 1.27510 1.02067 1.01345 0.91763 1.66081 1.04262 1.17065 1.32470 1.20826 0.90273 0.94898 0.94177 1.20622 0.96364 1.03832 0.93860 1.25531 0.98690 1.21851 0.98479 1.16974 0.86327 0.76375 0.82869 1.90807 1.45832 1.51420 1.55772 1.45799 1.10224 1.74093 1.05809 1.21222 0.80959 1.01232 0.95568 1.21946 0.97564 1.04024 0.92076 1.20451 0.90659 0.89512 0.93782 0.93752 1.22261 1.00668 1.01246 0.97126 1.42653 1.03605 1.09139 1.82146 1.19594 0.84964 0.95414 1.36305 0.90766 1.25489 1.01930 0.95900 1.03847 1.69803 1.35627 1.00874 1.55765 0.85239 0.81123 0.76460 0.77584 1.22026 1.22413 1.19328 1.83370 0.93421 1.62917 1.08792 0.88451 0.91733 0.92616 0.87305 0.88743 0.89649 0.89379 0.89974 0.75338 0.92277 0.93847 0.90843 0.87580 0.94838 0.93586 0.90576 0.79625 0.94333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 113.37 1.25 1.42 16 2 O -0.41 -6.14 10.69 -148.98 -1.59 -7.73 16 3 C 0.13 1.65 6.51 71.24 0.46 2.11 16 4 C 0.05 0.92 7.02 88.46 0.62 1.54 16 5 N -0.48 -11.98 10.50 -178.29 -1.87 -13.85 16 6 C 0.14 3.74 6.79 42.09 0.29 4.03 16 7 C -0.09 -2.30 9.70 71.23 0.69 -1.61 16 8 C -0.32 -8.51 6.48 23.88 0.15 -8.36 16 9 C 0.59 18.79 7.78 86.45 0.67 19.46 16 10 O -0.56 -22.30 14.27 -4.33 -0.06 -22.36 16 11 N -0.71 -19.41 5.55 -467.09 -2.59 -22.00 16 12 C 0.13 4.40 5.56 86.38 0.48 4.88 16 13 C -0.12 -3.29 4.87 30.59 0.15 -3.14 16 14 C 0.16 6.00 2.89 44.99 0.13 6.13 16 15 H 0.04 1.67 8.08 -2.39 -0.02 1.65 16 16 C -0.15 -4.90 9.49 71.98 0.68 -4.22 16 17 N -0.73 -35.94 4.57 -322.93 -1.48 -37.42 16 18 C -0.23 -12.77 9.93 84.03 0.83 -11.93 16 19 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 20 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 21 N -0.97 -60.26 13.06 21.65 0.28 -59.98 16 22 Si 0.97 47.31 29.55 68.60 2.03 49.33 16 23 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 24 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 25 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 26 S 0.26 4.46 22.31 -56.49 -1.26 3.20 16 27 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 2.10 8.14 -2.39 -0.02 2.09 16 33 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.08 2.52 6.01 -2.39 -0.01 2.51 16 35 H 0.41 8.25 7.66 -92.71 -0.71 7.54 16 36 H 0.06 2.04 8.14 -2.38 -0.02 2.03 16 37 H 0.04 1.84 7.75 -2.39 -0.02 1.83 16 38 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 39 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.37 19.71 7.80 -92.71 -0.72 18.99 16 44 H 0.25 15.08 8.31 -92.72 -0.77 14.31 16 Total: -1.00 -75.96 384.61 -0.08 -76.03 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: -0.41 Total: 28.66 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: 6.88 Total: 6.13 kcal Atomic # 7 Polarization: -127.60 SS G_CDS: -5.66 Total: -133.25 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -1.65 Total: -30.09 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.33 kcal Atomic # 16 Polarization: 4.46 SS G_CDS: -1.26 Total: 3.20 kcal Total: -75.96 -0.08 -76.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714499023.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.270 kcal (2) G-P(sol) polarization free energy of solvation -75.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds