Wall clock time and date at job start Tue Mar 31 2020 15:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 S 1.77225 * 127.33912 * 2 1 4 4 C 1.72216 * 94.84408 * 179.81291 * 3 2 1 5 5 O 1.21833 * 127.05673 * 180.20327 * 4 3 2 6 6 N 1.34237 * 105.88504 * 0.31875 * 4 3 2 7 7 C 1.46503 * 121.37941 * 179.88395 * 6 4 3 8 8 C 1.50702 * 109.46799 * 269.71702 * 7 6 4 9 9 O 1.21278 * 119.99992 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99700 * 179.72712 * 8 7 6 11 11 C 1.46502 * 119.99730 * 180.28072 * 10 8 7 12 12 C 1.53000 * 109.46934 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.47059 * 179.97438 * 12 11 10 14 14 N 1.46494 * 109.46998 * 179.97438 * 13 12 11 15 15 C 1.46504 * 119.99981 * 270.00092 * 14 13 12 16 16 C 1.36934 * 120.00402 * 90.00135 * 14 13 12 17 17 H 1.08000 * 119.99738 * 22.34370 * 16 14 13 18 18 C 1.38816 * 120.00555 * 202.34438 * 16 14 13 19 19 N 1.31617 * 119.99773 * 11.34944 * 18 16 14 20 20 Si 1.86798 * 119.99885 * 191.34365 * 18 16 14 21 21 H 1.48499 * 109.47043 * 60.00607 * 20 18 16 22 22 H 1.48499 * 109.46501 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47247 * 299.99915 * 20 18 16 24 24 C 1.32563 * 127.33832 * 180.02562 * 2 1 3 25 25 C 1.50704 * 121.64645 * 359.97438 * 24 2 1 26 26 H 1.09004 * 109.47350 * 270.00016 * 1 2 3 27 27 H 1.09000 * 109.47091 * 29.99478 * 1 2 3 28 28 H 1.09000 * 109.47641 * 150.00311 * 1 2 3 29 29 H 1.09005 * 109.46860 * 149.72073 * 7 6 4 30 30 H 1.08992 * 109.47384 * 29.71835 * 7 6 4 31 31 H 0.96997 * 120.00102 * 0.27352 * 10 8 7 32 32 H 1.09006 * 109.46936 * 299.99532 * 11 10 8 33 33 H 1.08994 * 109.47604 * 59.99552 * 11 10 8 34 34 H 1.08997 * 109.47232 * 299.99897 * 12 11 10 35 35 H 1.09002 * 109.46974 * 59.99813 * 12 11 10 36 36 H 1.08997 * 109.47424 * 300.00281 * 13 12 11 37 37 H 1.09002 * 109.46971 * 60.00313 * 13 12 11 38 38 H 1.09006 * 109.47093 * 94.21431 * 15 14 13 39 39 H 1.08999 * 109.47123 * 214.21142 * 15 14 13 40 40 H 1.08999 * 109.47184 * 334.21127 * 15 14 13 41 41 H 0.96994 * 119.99808 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.47146 * 270.02185 * 25 24 2 43 43 H 1.08998 * 109.47055 * 30.02280 * 25 24 2 44 44 H 1.08999 * 109.47184 * 150.02483 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5819 1.4090 0.0000 4 6 4.0344 0.4839 0.0056 5 8 5.1760 0.9095 0.0112 6 7 3.6507 -0.8025 0.0000 7 6 4.6312 -1.8910 0.0000 8 6 4.9674 -2.2642 -1.4209 9 8 4.4402 -1.6783 -2.3427 10 7 5.8584 -3.2451 -1.6672 11 6 6.1897 -3.6037 -3.0485 12 6 7.2183 -4.7364 -3.0485 13 6 7.5639 -5.1114 -4.4910 14 7 8.5491 -6.1955 -4.4910 15 6 9.9807 -5.8843 -4.4879 16 6 8.1321 -7.4998 -4.4940 17 1 7.1443 -7.7501 -4.8518 18 6 8.9789 -8.5004 -4.0371 19 7 10.0854 -8.1851 -3.3980 20 14 8.5479 -10.2943 -4.3293 21 1 8.4478 -10.5479 -5.7890 22 1 9.6067 -11.1586 -3.7487 23 1 7.2470 -10.6025 -3.6829 24 6 2.3110 -1.0540 -0.0005 25 6 1.7706 -2.4608 -0.0005 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 4.2131 -2.7567 0.5138 30 1 5.5356 -1.5654 0.5137 31 1 6.2802 -3.7134 -0.9300 32 1 5.2876 -3.9316 -3.5651 33 1 6.6058 -2.7356 -3.5595 34 1 8.1202 -4.4082 -2.5320 35 1 6.8025 -5.6047 -2.5374 36 1 6.6618 -5.4398 -5.0072 37 1 7.9795 -4.2432 -5.0025 38 1 10.3500 -5.8826 -3.4623 39 1 10.5174 -6.6366 -5.0660 40 1 10.1400 -4.9022 -4.9331 41 1 10.6773 -8.8842 -3.0791 42 1 1.6403 -2.8000 1.0271 43 1 0.8095 -2.4807 -0.5144 44 1 2.4711 -3.1191 -0.5143 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752122171.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:29 Heat of formation + Delta-G solvation = -20.725839 kcal Electronic energy + Delta-G solvation = -25163.252427 eV Core-core repulsion = 21436.422914 eV Total energy + Delta-G solvation = -3726.829514 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.49456 -39.34700 -37.89900 -36.30275 -34.84224 -33.90971 -32.15510 -30.77946 -30.05084 -29.32856 -26.09679 -25.73659 -24.98743 -23.71478 -21.95219 -20.97916 -20.29313 -19.89178 -18.52051 -17.72682 -17.28375 -16.77835 -15.99622 -15.87339 -15.66621 -15.24198 -14.68978 -14.52913 -14.28818 -14.17342 -13.88695 -13.86099 -13.42324 -13.28147 -13.13969 -12.92912 -12.74879 -12.65878 -12.35811 -11.69521 -11.67044 -11.36646 -11.20747 -11.12710 -10.86137 -10.77818 -10.52470 -10.33227 -10.28549 -10.13603 -9.94467 -9.81295 -9.54878 -9.09078 -8.58266 -8.12031 -6.80723 -5.76046 -3.22100 0.69851 1.11733 1.47596 1.86858 2.36873 2.42022 3.12963 3.35128 3.40998 3.41887 4.11530 4.38576 4.46144 4.49193 4.62777 4.71251 4.80633 4.96264 5.00059 5.19524 5.20603 5.29693 5.41293 5.44530 5.45946 5.50219 5.77914 5.86842 5.88866 6.06761 6.13479 6.38959 6.41557 6.48297 6.73611 6.77189 6.95119 7.05497 7.35775 7.38573 7.69757 7.77509 8.03175 8.36757 9.20579 9.83850 10.32843 11.29005 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.023777 B = 0.002135 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.333038 B =13109.786282 C =13739.976750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.209 4.209 3 S 0.004 5.996 4 C 0.488 3.512 5 O -0.472 6.472 6 N -0.514 5.514 7 C 0.079 3.921 8 C 0.494 3.506 9 O -0.529 6.529 10 N -0.719 5.719 11 C 0.121 3.879 12 C -0.150 4.150 13 C 0.156 3.844 14 N -0.603 5.603 15 C 0.163 3.837 16 C -0.255 4.255 17 H 0.068 0.932 18 C 0.000 4.000 19 N -0.909 5.909 20 Si 0.906 3.094 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.106 3.894 25 C -0.101 4.101 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.403 0.597 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.045 0.955 37 H 0.039 0.961 38 H 0.027 0.973 39 H 0.045 0.955 40 H -0.003 1.003 41 H 0.253 0.747 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.751 14.025 11.201 25.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.329 4.329 3 S 0.248 5.752 4 C 0.170 3.830 5 O -0.351 6.351 6 N -0.234 5.234 7 C -0.050 4.050 8 C 0.277 3.723 9 O -0.406 6.406 10 N -0.371 5.371 11 C -0.003 4.003 12 C -0.191 4.191 13 C 0.028 3.972 14 N -0.325 5.325 15 C 0.019 3.981 16 C -0.384 4.384 17 H 0.086 0.914 18 C -0.198 4.198 19 N -0.554 5.554 20 Si 0.736 3.264 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.210 1.210 24 C -0.004 4.004 25 C -0.160 4.160 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.237 0.763 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.046 0.954 39 H 0.063 0.937 40 H 0.015 0.985 41 H 0.063 0.937 42 H 0.105 0.895 43 H 0.111 0.889 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.398 15.935 10.557 26.530 hybrid contribution 0.570 -2.659 0.331 2.739 sum -17.828 13.276 10.888 24.751 Atomic orbital electron populations 1.20109 0.85670 1.03413 1.02755 1.23437 0.99666 0.92068 1.17690 1.85040 0.97779 1.11123 1.81267 1.21497 0.94664 0.84603 0.82235 1.90974 1.19272 1.71697 1.53181 1.45535 1.05746 1.06967 1.65161 1.21737 0.95024 0.91626 0.96638 1.20691 0.80100 0.80482 0.91023 1.90749 1.52081 1.52078 1.45642 1.46109 1.43513 1.37042 1.10431 1.21562 0.99196 0.98525 0.81018 1.22568 0.97168 0.96220 1.03119 1.20709 0.93310 0.90974 0.92188 1.43976 1.01075 1.01580 1.85866 1.20807 0.83798 0.94283 0.99252 1.19177 1.00827 0.82645 1.35780 0.91438 1.25041 0.97946 0.98328 0.98456 1.70055 1.13611 1.31493 1.40284 0.86321 0.77335 0.84827 0.77953 1.21053 1.21630 1.20982 1.19195 0.81766 0.98228 1.01241 1.20779 1.02447 0.89089 1.03665 0.90656 0.90827 0.90263 0.85894 0.85718 0.76282 0.91632 0.91833 0.92072 0.91224 0.93627 0.94269 0.95420 0.93664 0.98485 0.93698 0.89500 0.88932 0.90703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.31 10.10 36.00 0.36 0.06 16 2 C -0.21 -1.79 6.72 -36.22 -0.24 -2.04 16 3 S 0.00 0.05 22.97 -107.50 -2.47 -2.42 16 4 C 0.49 6.70 8.27 53.81 0.45 7.15 16 5 O -0.47 -7.92 17.55 5.07 0.09 -7.83 16 6 N -0.51 -5.77 2.09 -118.56 -0.25 -6.02 16 7 C 0.08 0.75 5.47 -5.19 -0.03 0.72 16 8 C 0.49 6.39 7.63 -10.98 -0.08 6.31 16 9 O -0.53 -9.11 16.43 5.56 0.09 -9.02 16 10 N -0.72 -8.71 5.56 -60.29 -0.33 -9.04 16 11 C 0.12 1.74 5.67 -4.04 -0.02 1.72 16 12 C -0.15 -2.53 5.65 -26.73 -0.15 -2.68 16 13 C 0.16 3.09 5.71 -4.05 -0.02 3.07 16 14 N -0.60 -14.91 2.93 -181.12 -0.53 -15.44 16 15 C 0.16 4.00 9.01 59.85 0.54 4.54 16 16 C -0.25 -6.86 9.67 -15.06 -0.15 -7.00 16 17 H 0.07 1.77 7.84 -52.49 -0.41 1.36 16 18 C 0.00 0.01 5.13 -17.43 -0.09 -0.08 16 19 N -0.91 -26.04 10.59 55.49 0.59 -25.46 16 20 Si 0.91 21.45 29.57 -169.99 -5.03 16.42 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.11 0.95 6.59 -82.51 -0.54 0.41 16 25 C -0.10 -0.58 9.07 36.01 0.33 -0.25 16 26 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.30 6.77 -51.93 -0.35 -0.05 16 29 H 0.12 0.68 6.83 -51.93 -0.35 0.33 16 30 H 0.12 1.09 7.80 -51.93 -0.40 0.68 16 31 H 0.40 3.87 8.47 -40.82 -0.35 3.52 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.05 0.88 8.03 -51.93 -0.42 0.46 16 37 H 0.04 0.72 7.86 -51.93 -0.41 0.31 16 38 H 0.03 0.72 7.42 -51.93 -0.39 0.34 16 39 H 0.04 1.19 7.19 -51.93 -0.37 0.82 16 40 H 0.00 -0.07 7.84 -51.93 -0.41 -0.48 16 41 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.09 0.42 6.69 -51.93 -0.35 0.07 16 44 H 0.07 0.50 6.70 -51.93 -0.35 0.15 16 LS Contribution 378.44 15.07 5.70 5.70 Total: -1.00 -35.25 378.44 -8.44 -43.69 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -6.65 Total: -2.52 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: 0.34 Total: 11.92 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.53 Total: -55.96 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.18 Total: -16.84 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -2.47 Total: -2.42 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.25 -8.44 -43.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752122171.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.969 kcal (2) G-P(sol) polarization free energy of solvation -35.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds