Wall clock time and date at job start Tue Mar 31 2020 15:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 S 1.77225 * 127.33912 * 2 1 4 4 C 1.72216 * 94.84408 * 179.81291 * 3 2 1 5 5 O 1.21833 * 127.05673 * 180.20327 * 4 3 2 6 6 N 1.34237 * 105.88504 * 0.31875 * 4 3 2 7 7 C 1.46503 * 121.37941 * 179.88395 * 6 4 3 8 8 C 1.50702 * 109.46799 * 269.71702 * 7 6 4 9 9 O 1.21278 * 119.99992 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99700 * 179.72712 * 8 7 6 11 11 C 1.46502 * 119.99730 * 180.28072 * 10 8 7 12 12 C 1.53000 * 109.46934 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.47059 * 179.97438 * 12 11 10 14 14 N 1.46494 * 109.46998 * 179.97438 * 13 12 11 15 15 C 1.46504 * 119.99981 * 270.00092 * 14 13 12 16 16 C 1.36934 * 120.00402 * 90.00135 * 14 13 12 17 17 H 1.08000 * 119.99738 * 22.34370 * 16 14 13 18 18 C 1.38816 * 120.00555 * 202.34438 * 16 14 13 19 19 N 1.31617 * 119.99773 * 11.34944 * 18 16 14 20 20 Si 1.86798 * 119.99885 * 191.34365 * 18 16 14 21 21 H 1.48499 * 109.47043 * 60.00607 * 20 18 16 22 22 H 1.48499 * 109.46501 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47247 * 299.99915 * 20 18 16 24 24 C 1.32563 * 127.33832 * 180.02562 * 2 1 3 25 25 C 1.50704 * 121.64645 * 359.97438 * 24 2 1 26 26 H 1.09004 * 109.47350 * 270.00016 * 1 2 3 27 27 H 1.09000 * 109.47091 * 29.99478 * 1 2 3 28 28 H 1.09000 * 109.47641 * 150.00311 * 1 2 3 29 29 H 1.09005 * 109.46860 * 149.72073 * 7 6 4 30 30 H 1.08992 * 109.47384 * 29.71835 * 7 6 4 31 31 H 0.96997 * 120.00102 * 0.27352 * 10 8 7 32 32 H 1.09006 * 109.46936 * 299.99532 * 11 10 8 33 33 H 1.08994 * 109.47604 * 59.99552 * 11 10 8 34 34 H 1.08997 * 109.47232 * 299.99897 * 12 11 10 35 35 H 1.09002 * 109.46974 * 59.99813 * 12 11 10 36 36 H 1.08997 * 109.47424 * 300.00281 * 13 12 11 37 37 H 1.09002 * 109.46971 * 60.00313 * 13 12 11 38 38 H 1.09006 * 109.47093 * 94.21431 * 15 14 13 39 39 H 1.08999 * 109.47123 * 214.21142 * 15 14 13 40 40 H 1.08999 * 109.47184 * 334.21127 * 15 14 13 41 41 H 0.96994 * 119.99808 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.47146 * 270.02185 * 25 24 2 43 43 H 1.08998 * 109.47055 * 30.02280 * 25 24 2 44 44 H 1.08999 * 109.47184 * 150.02483 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5819 1.4090 0.0000 4 6 4.0344 0.4839 0.0056 5 8 5.1760 0.9095 0.0112 6 7 3.6507 -0.8025 0.0000 7 6 4.6312 -1.8910 0.0000 8 6 4.9674 -2.2642 -1.4209 9 8 4.4402 -1.6783 -2.3427 10 7 5.8584 -3.2451 -1.6672 11 6 6.1897 -3.6037 -3.0485 12 6 7.2183 -4.7364 -3.0485 13 6 7.5639 -5.1114 -4.4910 14 7 8.5491 -6.1955 -4.4910 15 6 9.9807 -5.8843 -4.4879 16 6 8.1321 -7.4998 -4.4940 17 1 7.1443 -7.7501 -4.8518 18 6 8.9789 -8.5004 -4.0371 19 7 10.0854 -8.1851 -3.3980 20 14 8.5479 -10.2943 -4.3293 21 1 8.4478 -10.5479 -5.7890 22 1 9.6067 -11.1586 -3.7487 23 1 7.2470 -10.6025 -3.6829 24 6 2.3110 -1.0540 -0.0005 25 6 1.7706 -2.4608 -0.0005 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 4.2131 -2.7567 0.5138 30 1 5.5356 -1.5654 0.5137 31 1 6.2802 -3.7134 -0.9300 32 1 5.2876 -3.9316 -3.5651 33 1 6.6058 -2.7356 -3.5595 34 1 8.1202 -4.4082 -2.5320 35 1 6.8025 -5.6047 -2.5374 36 1 6.6618 -5.4398 -5.0072 37 1 7.9795 -4.2432 -5.0025 38 1 10.3500 -5.8826 -3.4623 39 1 10.5174 -6.6366 -5.0660 40 1 10.1400 -4.9022 -4.9331 41 1 10.6773 -8.8842 -3.0791 42 1 1.6403 -2.8000 1.0271 43 1 0.8095 -2.4807 -0.5144 44 1 2.4711 -3.1191 -0.5143 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752122171.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:28 Heat of formation + Delta-G solvation = -44.456892 kcal Electronic energy + Delta-G solvation = -25164.281483 eV Core-core repulsion = 21436.422914 eV Total energy + Delta-G solvation = -3727.858570 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.35185 -40.41969 -38.83040 -37.96685 -36.25362 -34.62457 -33.80801 -32.10361 -30.95552 -30.12820 -27.96393 -27.11588 -25.89306 -24.75088 -23.45117 -22.24172 -21.58039 -20.83032 -19.27881 -18.77225 -18.70021 -18.18647 -17.10985 -16.89835 -16.85306 -16.58586 -16.07706 -15.79524 -15.36428 -15.02147 -14.89869 -14.83102 -14.65610 -14.53254 -14.42411 -13.70167 -13.56070 -13.48637 -13.24208 -13.02204 -12.87109 -12.80055 -12.68808 -12.48996 -12.44042 -12.31541 -12.05205 -11.88251 -11.87745 -11.48550 -11.30570 -11.28291 -10.63291 -10.42523 -10.21424 -8.91599 -8.80435 -7.82074 -5.30392 -0.18425 0.33136 0.73638 1.00516 1.38419 1.47552 1.50345 1.56508 1.60067 2.15493 2.52202 3.32223 3.44812 3.61080 3.64680 3.74054 4.03866 4.08549 4.10269 4.23542 4.28150 4.46042 4.56091 4.62696 4.66530 4.73652 4.78350 4.85264 4.88419 4.88715 5.03391 5.08641 5.27395 5.27979 5.34106 5.39808 5.45870 5.64034 5.64519 5.72290 6.13646 6.33675 6.39499 7.03975 7.15795 7.87583 8.31623 9.21508 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.023777 B = 0.002135 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.333038 B =13109.786282 C =13739.976750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.200 4.200 3 S -0.006 6.006 4 C 0.467 3.533 5 O -0.521 6.521 6 N -0.514 5.514 7 C 0.081 3.919 8 C 0.495 3.505 9 O -0.575 6.575 10 N -0.710 5.710 11 C 0.135 3.865 12 C -0.128 4.128 13 C 0.150 3.850 14 N -0.621 5.621 15 C 0.176 3.824 16 C -0.262 4.262 17 H 0.072 0.928 18 C -0.054 4.054 19 N -0.939 5.939 20 Si 0.969 3.031 21 H -0.281 1.281 22 H -0.296 1.296 23 H -0.273 1.273 24 C 0.088 3.912 25 C -0.098 4.098 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.169 0.831 30 H 0.132 0.868 31 H 0.417 0.583 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.005 0.995 39 H 0.017 0.983 40 H 0.027 0.973 41 H 0.247 0.753 42 H 0.114 0.886 43 H 0.108 0.892 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.406 13.240 11.964 27.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.320 4.320 3 S 0.238 5.762 4 C 0.150 3.850 5 O -0.405 6.405 6 N -0.233 5.233 7 C -0.048 4.048 8 C 0.280 3.720 9 O -0.454 6.454 10 N -0.363 5.363 11 C 0.010 3.990 12 C -0.169 4.169 13 C 0.023 3.977 14 N -0.344 5.344 15 C 0.031 3.969 16 C -0.392 4.392 17 H 0.090 0.910 18 C -0.249 4.249 19 N -0.586 5.586 20 Si 0.797 3.203 21 H -0.207 1.207 22 H -0.222 1.222 23 H -0.198 1.198 24 C -0.021 4.021 25 C -0.157 4.157 26 H 0.113 0.887 27 H 0.094 0.906 28 H 0.117 0.883 29 H 0.186 0.814 30 H 0.150 0.850 31 H 0.254 0.746 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.023 0.977 39 H 0.035 0.965 40 H 0.045 0.955 41 H 0.057 0.943 42 H 0.132 0.868 43 H 0.127 0.873 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.113 15.138 11.340 28.346 hybrid contribution 1.292 -2.343 0.051 2.676 sum -19.821 12.796 11.391 26.198 Atomic orbital electron populations 1.20305 0.82896 1.04446 1.04339 1.24027 1.01008 0.90201 1.16724 1.85009 0.97733 1.12702 1.80741 1.21883 0.94737 0.85793 0.82559 1.90926 1.21028 1.72964 1.55604 1.45641 1.07001 1.06475 1.64230 1.21927 0.95674 0.92782 0.94400 1.21236 0.79143 0.79540 0.92048 1.90730 1.53792 1.53557 1.47356 1.45943 1.43356 1.37037 1.09961 1.21220 0.98275 0.97115 0.82380 1.22188 0.97412 0.96519 1.00750 1.20885 0.92562 0.90187 0.94027 1.44210 1.01804 1.02187 1.86175 1.20558 0.83848 0.94840 0.97628 1.19507 1.00861 0.83902 1.34914 0.91015 1.25793 0.98126 1.02177 0.98816 1.70222 1.14592 1.32194 1.41606 0.85319 0.77159 0.80078 0.77744 1.20730 1.22221 1.19822 1.19812 0.80774 1.00084 1.01392 1.20931 1.02673 0.86511 1.05542 0.88702 0.90603 0.88273 0.81404 0.85040 0.74620 0.91616 0.92553 0.92834 0.92390 0.93054 0.92735 0.97658 0.96450 0.95476 0.94330 0.86758 0.87332 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.10 71.24 0.72 0.30 16 2 C -0.20 -3.03 6.72 24.53 0.16 -2.86 16 3 S -0.01 -0.13 22.97 -56.49 -1.30 -1.42 16 4 C 0.47 13.02 8.27 129.88 1.07 14.09 16 5 O -0.52 -18.27 17.55 -4.78 -0.08 -18.35 16 6 N -0.51 -10.98 2.09 -647.49 -1.35 -12.33 16 7 C 0.08 1.38 5.47 85.63 0.47 1.85 16 8 C 0.49 12.22 7.63 87.66 0.67 12.89 16 9 O -0.57 -19.54 16.43 -3.02 -0.05 -19.59 16 10 N -0.71 -16.12 5.56 -463.05 -2.57 -18.70 16 11 C 0.13 3.72 5.67 86.38 0.49 4.21 16 12 C -0.13 -4.20 5.65 30.59 0.17 -4.02 16 13 C 0.15 5.75 5.71 86.38 0.49 6.24 16 14 N -0.62 -30.47 2.93 -726.94 -2.13 -32.59 16 15 C 0.18 8.68 9.01 127.77 1.15 9.83 16 16 C -0.26 -13.98 9.67 84.03 0.81 -13.17 16 17 H 0.07 3.69 7.84 -2.91 -0.02 3.67 16 18 C -0.05 -2.97 5.13 84.86 0.44 -2.54 16 19 N -0.94 -54.54 10.59 21.65 0.23 -54.31 16 20 Si 0.97 43.97 29.57 68.60 2.03 46.00 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 24 C 0.09 1.39 6.59 40.71 0.27 1.66 16 25 C -0.10 -0.77 9.07 71.24 0.65 -0.13 16 26 H 0.09 0.33 8.14 -2.38 -0.02 0.31 16 27 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.10 0.34 6.77 -2.39 -0.02 0.32 16 29 H 0.17 1.28 6.83 -2.38 -0.02 1.27 16 30 H 0.13 2.13 7.80 -2.39 -0.02 2.11 16 31 H 0.42 7.19 8.47 -92.71 -0.79 6.40 16 32 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.05 1.90 8.03 -2.39 -0.02 1.88 16 37 H 0.05 1.92 7.86 -2.39 -0.02 1.90 16 38 H 0.01 0.27 7.42 -2.38 -0.02 0.26 16 39 H 0.02 0.91 7.19 -2.39 -0.02 0.89 16 40 H 0.03 1.14 7.84 -2.39 -0.02 1.12 16 41 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 42 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 43 H 0.11 0.53 6.69 -2.39 -0.02 0.51 16 44 H 0.07 0.67 6.70 -2.39 -0.02 0.65 16 Total: -1.00 -78.58 378.44 2.57 -76.01 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: 0.23 Total: 6.94 kcal Atomic # 6 Polarization: 20.79 SS G_CDS: 7.57 Total: 28.35 kcal Atomic # 7 Polarization: -112.11 SS G_CDS: -5.82 Total: -117.93 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: -0.13 Total: -37.94 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -1.30 Total: -1.42 kcal Total: -78.58 2.57 -76.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752122171.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.551 kcal (2) G-P(sol) polarization free energy of solvation -78.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds