Wall clock time and date at job start Tue Mar 31 2020 15:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30255 * 125.61644 * 2 1 4 4 C 1.34476 * 108.69842 * 179.97438 * 3 2 1 5 5 C 1.50701 * 126.16451 * 180.02562 * 4 3 2 6 6 C 1.34333 * 107.66811 * 0.02562 * 4 3 2 7 7 C 1.50701 * 126.44115 * 179.97438 * 6 4 3 8 8 N 1.46901 * 109.46921 * 89.99711 * 7 6 4 9 9 C 1.46906 * 110.99793 * 179.97438 * 8 7 6 10 10 H 1.09003 * 109.46871 * 35.00433 * 9 8 7 11 11 C 1.52994 * 109.47113 * 275.00325 * 9 8 7 12 12 C 1.53002 * 109.47092 * 155.00227 * 9 8 7 13 13 N 1.46504 * 109.47066 * 304.99917 * 12 9 8 14 14 C 1.34771 * 120.00168 * 179.97438 * 13 12 9 15 15 O 1.21289 * 119.99722 * 359.97438 * 14 13 12 16 16 C 1.50695 * 119.99997 * 180.02562 * 14 13 12 17 17 S 1.81008 * 109.47015 * 180.02562 * 16 14 13 18 18 C 1.76201 * 100.00155 * 179.97438 * 17 16 14 19 19 H 1.08006 * 119.99878 * 0.02562 * 18 17 16 20 20 C 1.38795 * 120.00190 * 179.97438 * 18 17 16 21 21 N 1.31638 * 119.99903 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00191 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46713 * 90.00400 * 22 20 18 24 24 H 1.48495 * 109.47359 * 210.00625 * 22 20 18 25 25 H 1.48504 * 109.47097 * 330.01042 * 22 20 18 26 26 O 1.33963 * 125.61979 * 180.29315 * 2 1 3 27 27 H 1.08993 * 109.47378 * 90.01919 * 1 2 3 28 28 H 1.08999 * 109.46896 * 210.02542 * 1 2 3 29 29 H 1.09004 * 109.46900 * 330.02029 * 1 2 3 30 30 H 1.09004 * 109.47005 * 270.00081 * 5 4 3 31 31 H 1.08993 * 109.47327 * 29.99864 * 5 4 3 32 32 H 1.09003 * 109.47092 * 150.00788 * 5 4 3 33 33 H 1.09002 * 109.47060 * 209.99892 * 7 6 4 34 34 H 1.09001 * 109.47380 * 329.99979 * 7 6 4 35 35 H 1.00899 * 111.00283 * 303.95218 * 8 7 6 36 36 H 1.08995 * 109.47731 * 59.99955 * 11 9 8 37 37 H 1.08996 * 109.47268 * 180.02562 * 11 9 8 38 38 H 1.09003 * 109.47340 * 299.99821 * 11 9 8 39 39 H 1.09000 * 109.46986 * 65.00067 * 12 9 8 40 40 H 1.08994 * 109.46981 * 185.00297 * 12 9 8 41 41 H 0.97000 * 119.99510 * 0.02562 * 13 12 9 42 42 H 1.09000 * 109.47328 * 299.99894 * 16 14 13 43 43 H 1.08997 * 109.47563 * 60.00601 * 16 14 13 44 44 H 0.96996 * 120.00141 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 0.0006 5 6 4.7570 1.5728 0.0013 6 6 3.5698 -0.6757 0.0004 7 6 4.7937 -1.5549 0.0003 8 7 5.1913 -1.8407 1.3853 9 6 6.3837 -2.6980 1.4244 10 1 7.0409 -2.4444 0.5925 11 6 5.9615 -4.1642 1.3122 12 6 7.1252 -2.4803 2.7448 13 7 7.4246 -1.0554 2.9076 14 6 8.0775 -0.6251 4.0053 15 8 8.4169 -1.4175 4.8586 16 6 8.3849 0.8406 4.1730 17 16 9.2624 1.0981 5.7351 18 6 9.4895 2.8444 5.6742 19 1 9.1195 3.4080 4.8304 20 6 10.1428 3.4959 6.7112 21 7 10.5932 2.8090 7.7399 22 14 10.3841 5.3470 6.6463 23 1 9.2247 6.0200 7.2853 24 1 11.6283 5.7097 7.3712 25 1 10.4909 5.7830 5.2307 26 8 2.2873 -1.0890 -0.0056 27 1 -0.3634 -0.0003 -1.0276 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5135 30 1 5.0480 1.7912 -1.0262 31 1 4.5127 2.5024 0.5151 32 1 5.5819 1.0793 0.5154 33 1 4.5696 -2.4896 -0.5137 34 1 5.6081 -1.0440 -0.5134 35 1 5.3422 -0.9871 1.9017 36 1 5.4332 -4.3194 0.3716 37 1 6.8461 -4.8003 1.3417 38 1 5.3043 -4.4178 2.1441 39 1 6.5006 -2.8172 3.5721 40 1 8.0554 -3.0483 2.7371 41 1 7.1522 -0.4217 2.2257 42 1 9.0097 1.1778 3.3459 43 1 7.4546 1.4085 4.1806 44 1 11.0501 3.2642 8.4644 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752860056.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:38 Heat of formation + Delta-G solvation = -21.882309 kcal Electronic energy + Delta-G solvation = -24905.464965 eV Core-core repulsion = 21178.585303 eV Total energy + Delta-G solvation = -3726.879662 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.61953 -39.51693 -37.75415 -35.44627 -34.48524 -33.14200 -32.43777 -31.41460 -29.63453 -29.38931 -27.79170 -25.98566 -25.38679 -24.06569 -22.02400 -21.02710 -20.90064 -20.46639 -18.00569 -17.21046 -17.17088 -16.42865 -16.18871 -16.18087 -15.45006 -14.95171 -14.86459 -14.81216 -14.41359 -14.00922 -13.70100 -13.55236 -13.43153 -13.30195 -13.10755 -12.98551 -12.96074 -12.72341 -12.65125 -12.38611 -12.18785 -12.00631 -11.75920 -11.27398 -11.15305 -11.06985 -11.03601 -10.76895 -10.73497 -9.83291 -9.47620 -9.08871 -9.06953 -8.99279 -8.79863 -8.25761 -6.51690 -6.22723 -3.93593 1.09000 2.31003 2.35926 2.96358 3.03452 3.22000 3.26862 3.30529 3.59061 3.67074 3.78170 4.19227 4.32048 4.38747 4.49245 4.62122 4.80277 4.86268 4.94266 4.96448 5.01510 5.09514 5.12526 5.13414 5.28046 5.38186 5.40462 5.41630 5.48621 5.51978 5.60393 5.72980 5.78867 5.79729 5.84902 5.96038 6.06663 6.09477 6.44741 6.48741 6.83528 7.46989 7.55081 7.58771 8.34032 8.53080 9.22634 10.84692 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011922 B = 0.002648 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.095021 B =10573.258397 C =12400.125249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.192 3.808 3 N -0.481 5.481 4 C -0.002 4.002 5 C -0.075 4.075 6 C -0.047 4.047 7 C 0.145 3.855 8 N -0.683 5.683 9 C 0.075 3.925 10 H 0.055 0.945 11 C -0.139 4.139 12 C 0.118 3.882 13 N -0.744 5.744 14 C 0.533 3.467 15 O -0.513 6.513 16 C -0.154 4.154 17 S -0.059 6.059 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 O -0.193 6.193 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.348 0.652 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.391 0.609 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.358 -9.545 -20.854 28.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.015 4.015 3 N -0.212 5.212 4 C -0.123 4.123 5 C -0.132 4.132 6 C -0.100 4.100 7 C 0.016 3.984 8 N -0.319 5.319 9 C -0.035 4.035 10 H 0.073 0.927 11 C -0.197 4.197 12 C -0.006 4.006 13 N -0.399 5.399 14 C 0.320 3.680 15 O -0.386 6.386 16 C -0.305 4.305 17 S 0.168 5.832 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.202 1.202 24 H -0.207 1.207 25 H -0.197 1.197 26 O -0.080 6.080 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.120 0.880 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.086 0.914 35 H 0.169 0.831 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.225 0.775 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.356 -10.849 -19.165 27.432 hybrid contribution 0.467 2.390 -1.613 2.921 sum -15.889 -8.459 -20.778 27.491 Atomic orbital electron populations 1.20262 0.81279 1.05275 1.04589 1.26254 0.96450 0.78693 1.00144 1.70371 1.01591 1.30323 1.18908 1.21582 0.93575 0.92084 1.05094 1.20157 0.91543 0.98487 1.02998 1.22887 0.83736 0.94294 1.09124 1.20286 0.89105 0.97917 0.91122 1.60503 1.36892 1.22384 1.12095 1.21818 0.89554 0.95069 0.97014 0.92678 1.21745 1.01737 0.93502 1.02740 1.21523 0.99845 0.82452 0.96821 1.46053 1.61580 1.08575 1.23737 1.20307 0.76499 0.90632 0.80603 1.90716 1.50527 1.56458 1.40918 1.23538 1.05214 0.94053 1.07691 1.85418 1.71440 1.09278 1.17096 1.22858 1.43767 0.92310 1.09437 0.90923 1.24996 0.94726 0.99346 0.94531 1.70018 1.35941 1.36041 1.08271 0.86165 0.77883 0.83093 0.78344 1.20243 1.20749 1.19689 1.84378 1.16428 1.37487 1.69678 0.88996 0.89263 0.88031 0.90520 0.89966 0.91116 0.88841 0.91429 0.83068 0.92361 0.91805 0.91377 0.90463 0.90545 0.77495 0.89240 0.89182 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.31 10.51 36.01 0.38 0.07 16 2 C 0.19 1.96 8.34 -12.94 -0.11 1.85 16 3 N -0.48 -5.86 11.29 -7.35 -0.08 -5.94 16 4 C 0.00 -0.03 7.11 -82.81 -0.59 -0.62 16 5 C -0.07 -0.63 10.05 36.01 0.36 -0.26 16 6 C -0.05 -0.48 6.90 -35.69 -0.25 -0.73 16 7 C 0.14 1.10 5.64 -4.97 -0.03 1.07 16 8 N -0.68 -5.91 6.29 -107.99 -0.68 -6.59 16 9 C 0.07 0.59 2.81 -67.71 -0.19 0.40 16 10 H 0.06 0.37 7.80 -51.93 -0.41 -0.03 16 11 C -0.14 -0.99 9.41 37.15 0.35 -0.64 16 12 C 0.12 1.29 5.31 -4.04 -0.02 1.27 16 13 N -0.74 -9.29 4.99 -60.29 -0.30 -9.59 16 14 C 0.53 9.67 7.85 -10.99 -0.09 9.58 16 15 O -0.51 -11.47 15.86 5.55 0.09 -11.38 16 16 C -0.15 -3.04 6.16 36.00 0.22 -2.82 16 17 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 18 C -0.54 -15.16 9.50 30.94 0.29 -14.86 16 19 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 22 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 26 O -0.19 -2.14 10.77 5.39 0.06 -2.08 16 27 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.47 7.79 -51.93 -0.40 0.07 16 33 H 0.09 0.65 7.44 -51.93 -0.39 0.26 16 34 H 0.07 0.40 7.71 -51.93 -0.40 0.00 16 35 H 0.35 3.25 6.71 -39.29 -0.26 2.99 16 36 H 0.06 0.37 7.45 -51.93 -0.39 -0.02 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.39 3.76 7.37 -40.82 -0.30 3.46 16 42 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 43 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 44 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 386.89 15.07 5.83 5.83 Total: -1.00 -36.62 386.89 -8.09 -44.71 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -6.74 Total: 1.59 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 0.24 Total: -3.69 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: -0.33 Total: -47.50 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.15 Total: -13.46 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.62 -8.09 -44.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752860056.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.826 kcal (2) G-P(sol) polarization free energy of solvation -36.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds