Wall clock time and date at job start Tue Mar 31 2020 15:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30255 * 125.61644 * 2 1 4 4 C 1.34476 * 108.69842 * 179.97438 * 3 2 1 5 5 C 1.50701 * 126.16451 * 180.02562 * 4 3 2 6 6 C 1.34333 * 107.66811 * 0.02562 * 4 3 2 7 7 C 1.50701 * 126.44115 * 179.97438 * 6 4 3 8 8 N 1.46901 * 109.46921 * 89.99711 * 7 6 4 9 9 C 1.46906 * 110.99793 * 179.97438 * 8 7 6 10 10 H 1.09003 * 109.46871 * 35.00433 * 9 8 7 11 11 C 1.52994 * 109.47113 * 275.00325 * 9 8 7 12 12 C 1.53002 * 109.47092 * 155.00227 * 9 8 7 13 13 N 1.46504 * 109.47066 * 304.99917 * 12 9 8 14 14 C 1.34771 * 120.00168 * 179.97438 * 13 12 9 15 15 O 1.21289 * 119.99722 * 359.97438 * 14 13 12 16 16 C 1.50695 * 119.99997 * 180.02562 * 14 13 12 17 17 S 1.81008 * 109.47015 * 180.02562 * 16 14 13 18 18 C 1.76201 * 100.00155 * 179.97438 * 17 16 14 19 19 H 1.08006 * 119.99878 * 0.02562 * 18 17 16 20 20 C 1.38795 * 120.00190 * 179.97438 * 18 17 16 21 21 N 1.31638 * 119.99903 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00191 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46713 * 90.00400 * 22 20 18 24 24 H 1.48495 * 109.47359 * 210.00625 * 22 20 18 25 25 H 1.48504 * 109.47097 * 330.01042 * 22 20 18 26 26 O 1.33963 * 125.61979 * 180.29315 * 2 1 3 27 27 H 1.08993 * 109.47378 * 90.01919 * 1 2 3 28 28 H 1.08999 * 109.46896 * 210.02542 * 1 2 3 29 29 H 1.09004 * 109.46900 * 330.02029 * 1 2 3 30 30 H 1.09004 * 109.47005 * 270.00081 * 5 4 3 31 31 H 1.08993 * 109.47327 * 29.99864 * 5 4 3 32 32 H 1.09003 * 109.47092 * 150.00788 * 5 4 3 33 33 H 1.09002 * 109.47060 * 209.99892 * 7 6 4 34 34 H 1.09001 * 109.47380 * 329.99979 * 7 6 4 35 35 H 1.00899 * 111.00283 * 303.95218 * 8 7 6 36 36 H 1.08995 * 109.47731 * 59.99955 * 11 9 8 37 37 H 1.08996 * 109.47268 * 180.02562 * 11 9 8 38 38 H 1.09003 * 109.47340 * 299.99821 * 11 9 8 39 39 H 1.09000 * 109.46986 * 65.00067 * 12 9 8 40 40 H 1.08994 * 109.46981 * 185.00297 * 12 9 8 41 41 H 0.97000 * 119.99510 * 0.02562 * 13 12 9 42 42 H 1.09000 * 109.47328 * 299.99894 * 16 14 13 43 43 H 1.08997 * 109.47563 * 60.00601 * 16 14 13 44 44 H 0.96996 * 120.00141 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 0.0006 5 6 4.7570 1.5728 0.0013 6 6 3.5698 -0.6757 0.0004 7 6 4.7937 -1.5549 0.0003 8 7 5.1913 -1.8407 1.3853 9 6 6.3837 -2.6980 1.4244 10 1 7.0409 -2.4444 0.5925 11 6 5.9615 -4.1642 1.3122 12 6 7.1252 -2.4803 2.7448 13 7 7.4246 -1.0554 2.9076 14 6 8.0775 -0.6251 4.0053 15 8 8.4169 -1.4175 4.8586 16 6 8.3849 0.8406 4.1730 17 16 9.2624 1.0981 5.7351 18 6 9.4895 2.8444 5.6742 19 1 9.1195 3.4080 4.8304 20 6 10.1428 3.4959 6.7112 21 7 10.5932 2.8090 7.7399 22 14 10.3841 5.3470 6.6463 23 1 9.2247 6.0200 7.2853 24 1 11.6283 5.7097 7.3712 25 1 10.4909 5.7830 5.2307 26 8 2.2873 -1.0890 -0.0056 27 1 -0.3634 -0.0003 -1.0276 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5135 30 1 5.0480 1.7912 -1.0262 31 1 4.5127 2.5024 0.5151 32 1 5.5819 1.0793 0.5154 33 1 4.5696 -2.4896 -0.5137 34 1 5.6081 -1.0440 -0.5134 35 1 5.3422 -0.9871 1.9017 36 1 5.4332 -4.3194 0.3716 37 1 6.8461 -4.8003 1.3417 38 1 5.3043 -4.4178 2.1441 39 1 6.5006 -2.8172 3.5721 40 1 8.0554 -3.0483 2.7371 41 1 7.1522 -0.4217 2.2257 42 1 9.0097 1.1778 3.3459 43 1 7.4546 1.4085 4.1806 44 1 11.0501 3.2642 8.4644 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752860056.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:38 Heat of formation + Delta-G solvation = -51.349331 kcal Electronic energy + Delta-G solvation = -24906.742751 eV Core-core repulsion = 21178.585303 eV Total energy + Delta-G solvation = -3728.157448 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.35547 -40.79431 -38.66002 -36.20926 -35.47790 -34.58067 -33.99500 -32.15938 -30.81049 -30.17899 -28.42567 -27.73251 -26.75189 -24.73254 -22.76328 -21.88051 -21.72381 -21.57851 -19.87366 -18.22686 -17.93829 -17.67375 -17.24874 -17.04408 -16.87627 -16.40214 -16.00839 -15.89647 -15.60052 -15.01254 -14.74527 -14.49034 -14.29244 -14.17427 -14.10146 -13.87455 -13.71972 -13.47978 -13.37052 -13.26927 -13.16326 -13.02475 -12.88926 -12.85964 -12.62787 -12.56743 -11.96520 -11.90531 -11.71534 -11.50506 -11.14161 -10.99941 -10.27465 -10.19976 -9.71372 -9.46731 -8.66481 -8.34507 -6.12412 0.36801 1.26588 1.42632 1.46918 1.56775 1.57854 1.59002 1.69703 2.21384 2.28006 2.99773 3.00806 3.11835 3.31826 3.62866 3.69869 3.82298 3.93328 4.09449 4.15827 4.25559 4.29911 4.36871 4.49555 4.50122 4.60896 4.61816 4.63656 4.69601 4.76898 4.83080 4.89391 4.91203 5.00038 5.06586 5.17438 5.29843 5.40448 5.42280 5.43690 5.84984 6.14385 6.20102 6.39187 6.73221 7.07015 7.18652 8.74657 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011922 B = 0.002648 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.095021 B =10573.258397 C =12400.125249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.186 3.814 3 N -0.519 5.519 4 C -0.022 4.022 5 C -0.074 4.074 6 C -0.055 4.055 7 C 0.148 3.852 8 N -0.695 5.695 9 C 0.087 3.913 10 H 0.079 0.921 11 C -0.137 4.137 12 C 0.118 3.882 13 N -0.715 5.715 14 C 0.536 3.464 15 O -0.562 6.562 16 C -0.130 4.130 17 S -0.152 6.152 18 C -0.545 4.545 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 0.998 3.002 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.257 1.257 26 O -0.207 6.207 27 H 0.111 0.889 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.343 0.657 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.410 0.590 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.047 -8.950 -23.415 30.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.021 4.021 3 N -0.250 5.250 4 C -0.142 4.142 5 C -0.132 4.132 6 C -0.108 4.108 7 C 0.020 3.980 8 N -0.330 5.330 9 C -0.022 4.022 10 H 0.097 0.903 11 C -0.196 4.196 12 C -0.006 4.006 13 N -0.370 5.370 14 C 0.322 3.678 15 O -0.440 6.440 16 C -0.282 4.282 17 S 0.075 5.925 18 C -0.692 4.692 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.181 1.181 26 O -0.094 6.094 27 H 0.129 0.871 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.121 0.879 34 H 0.109 0.891 35 H 0.163 0.837 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.247 0.753 42 H 0.131 0.869 43 H 0.127 0.873 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.075 -10.258 -21.792 29.524 hybrid contribution 0.567 2.115 -0.911 2.372 sum -16.508 -8.143 -22.702 29.227 Atomic orbital electron populations 1.20509 0.78476 1.06241 1.06124 1.27173 0.97950 0.78203 0.98773 1.70378 1.02604 1.31486 1.20503 1.22021 0.93887 0.92951 1.05373 1.20245 0.91243 0.97748 1.03918 1.23335 0.84105 0.94534 1.08851 1.20415 0.88669 0.98300 0.90623 1.60490 1.37304 1.22262 1.12941 1.21755 0.89337 0.95484 0.95597 0.90340 1.21745 1.02044 0.92974 1.02798 1.21645 0.99940 0.80858 0.98173 1.45741 1.59190 1.09926 1.22175 1.20046 0.76818 0.89557 0.81417 1.90707 1.53020 1.57243 1.43057 1.23378 1.05269 0.95826 1.03688 1.85604 1.73437 1.10193 1.23227 1.23197 1.43722 0.92399 1.09920 0.89840 1.26127 0.94168 1.04976 0.93945 1.70185 1.36995 1.38384 1.09240 0.84962 0.77922 0.76063 0.79091 1.19443 1.20351 1.18068 1.84385 1.17058 1.38015 1.69949 0.87051 0.87732 0.87533 0.89266 0.91101 0.89322 0.87916 0.89053 0.83656 0.91108 0.90837 0.92775 0.92227 0.90627 0.75310 0.86935 0.87274 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.51 71.24 0.75 0.21 16 2 C 0.19 3.66 8.34 88.34 0.74 4.40 16 3 N -0.52 -12.38 11.29 -291.98 -3.30 -15.68 16 4 C -0.02 -0.46 7.11 41.26 0.29 -0.17 16 5 C -0.07 -1.12 10.05 71.24 0.72 -0.41 16 6 C -0.06 -1.04 6.90 24.79 0.17 -0.87 16 7 C 0.15 1.83 5.64 85.56 0.48 2.32 16 8 N -0.69 -10.29 6.29 -495.56 -3.12 -13.41 16 9 C 0.09 1.13 2.81 44.91 0.13 1.26 16 10 H 0.08 0.72 7.80 -2.39 -0.02 0.70 16 11 C -0.14 -1.62 9.41 71.98 0.68 -0.94 16 12 C 0.12 2.38 5.31 86.38 0.46 2.84 16 13 N -0.72 -16.42 4.99 -463.06 -2.31 -18.73 16 14 C 0.54 18.99 7.85 87.66 0.69 19.68 16 15 O -0.56 -25.58 15.86 -3.06 -0.05 -25.63 16 16 C -0.13 -4.99 6.16 71.23 0.44 -4.55 16 17 S -0.15 -8.35 20.57 -56.49 -1.16 -9.51 16 18 C -0.54 -30.82 9.50 67.95 0.65 -30.18 16 19 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 20 C 0.01 0.71 5.49 84.86 0.47 1.18 16 21 N -0.91 -55.96 13.22 21.65 0.29 -55.67 16 22 Si 1.00 43.44 29.55 68.60 2.03 45.47 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 24 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 26 O -0.21 -4.37 10.77 -3.62 -0.04 -4.41 16 27 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 0.95 7.79 -2.39 -0.02 0.93 16 33 H 0.10 1.10 7.44 -2.39 -0.02 1.08 16 34 H 0.09 0.71 7.71 -2.39 -0.02 0.69 16 35 H 0.34 5.58 6.71 -89.69 -0.60 4.98 16 36 H 0.07 0.69 7.45 -2.39 -0.02 0.67 16 37 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.08 1.60 8.14 -2.39 -0.02 1.59 16 41 H 0.41 6.55 7.37 -92.71 -0.68 5.87 16 42 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 43 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 44 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -82.63 386.89 -1.27 -83.90 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -0.26 Total: 18.90 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 6.65 Total: -5.24 kcal Atomic # 7 Polarization: -95.04 SS G_CDS: -8.44 Total: -103.48 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.09 Total: -30.04 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.51 kcal Total: -82.63 -1.27 -83.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752860056.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.555 kcal (2) G-P(sol) polarization free energy of solvation -82.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds