Wall clock time and date at job start Tue Mar 31 2020 15:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30254 * 125.62075 * 2 1 4 4 C 1.34475 * 108.70308 * 179.97438 * 3 2 1 5 5 C 1.50707 * 126.16684 * 179.97438 * 4 3 2 6 6 C 1.34325 * 107.67152 * 359.97438 * 4 3 2 7 7 C 1.50697 * 126.44914 * 180.02562 * 6 4 3 8 8 N 1.46901 * 109.46943 * 89.99914 * 7 6 4 9 9 C 1.46905 * 110.99870 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.47224 * 325.00460 * 9 8 7 11 11 C 1.53002 * 109.47102 * 85.00132 * 9 8 7 12 12 C 1.52996 * 109.46819 * 205.00022 * 9 8 7 13 13 N 1.46497 * 109.47185 * 55.00650 * 12 9 8 14 14 C 1.34786 * 119.99949 * 180.02562 * 13 12 9 15 15 O 1.21273 * 119.99946 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.99774 * 179.97438 * 14 13 12 17 17 S 1.81004 * 109.47006 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99967 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00502 * 359.97438 * 18 17 16 20 20 C 1.38799 * 120.00141 * 180.02562 * 18 17 16 21 21 N 1.31638 * 119.99602 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00405 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46959 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47208 * 119.99551 * 22 20 18 25 25 H 1.48502 * 109.47137 * 239.99876 * 22 20 18 26 26 O 1.33963 * 125.62172 * 180.28356 * 2 1 3 27 27 H 1.09005 * 109.46851 * 90.02680 * 1 2 3 28 28 H 1.08998 * 109.47220 * 210.02194 * 1 2 3 29 29 H 1.08996 * 109.47424 * 330.02840 * 1 2 3 30 30 H 1.08997 * 109.46992 * 269.99800 * 5 4 3 31 31 H 1.09006 * 109.46814 * 29.99643 * 5 4 3 32 32 H 1.08999 * 109.46860 * 149.99632 * 5 4 3 33 33 H 1.09004 * 109.46763 * 330.00355 * 7 6 4 34 34 H 1.08995 * 109.47483 * 210.00012 * 7 6 4 35 35 H 1.00901 * 111.00067 * 303.95401 * 8 7 6 36 36 H 1.08999 * 109.47105 * 180.02562 * 11 9 8 37 37 H 1.08996 * 109.46950 * 299.99914 * 11 9 8 38 38 H 1.09000 * 109.46959 * 59.99562 * 11 9 8 39 39 H 1.09012 * 109.46941 * 175.00030 * 12 9 8 40 40 H 1.08996 * 109.47415 * 294.99514 * 12 9 8 41 41 H 0.96993 * 120.00253 * 359.97438 * 13 12 9 42 42 H 1.09007 * 109.47025 * 299.98958 * 16 14 13 43 43 H 1.08997 * 109.47386 * 59.99267 * 16 14 13 44 44 H 0.96999 * 119.99268 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 0.0006 5 6 4.7571 1.5727 0.0002 6 6 3.5698 -0.6756 0.0015 7 6 4.7937 -1.5549 0.0029 8 7 5.1904 -1.8396 1.3884 9 6 6.3834 -2.6960 1.4290 10 1 6.3536 -3.4002 0.5975 11 6 7.6383 -1.8279 1.3174 12 6 6.4126 -3.4673 2.7500 13 7 5.1578 -4.2058 2.9121 14 6 4.9576 -4.9613 4.0102 15 8 5.8163 -5.0301 4.8638 16 6 3.6665 -5.7204 4.1773 17 16 3.7012 -6.6331 5.7400 18 6 2.1183 -7.4046 5.6789 19 1 1.4666 -7.2341 4.8347 20 6 1.7084 -8.2308 6.7162 21 7 2.5025 -8.4382 7.7454 22 14 0.0300 -9.0481 6.6518 23 1 -0.6635 -8.6567 5.3983 24 1 0.1962 -10.5234 6.6849 25 1 -0.7769 -8.6146 7.8207 26 8 2.2872 -1.0889 -0.0054 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5134 30 1 5.0478 1.7902 -1.0275 31 1 4.5128 2.5029 0.5133 32 1 5.5820 1.0797 0.5147 33 1 5.6084 -1.0444 -0.5107 34 1 4.5699 -2.4900 -0.5104 35 1 5.3410 -0.9856 1.9042 36 1 8.5235 -2.4633 1.3471 37 1 7.6174 -1.2783 0.3764 38 1 7.6680 -1.1236 2.1488 39 1 7.2480 -4.1676 2.7433 40 1 6.5319 -2.7674 3.5769 41 1 4.4708 -4.1505 2.2296 42 1 2.8314 -5.0200 4.1838 43 1 3.5471 -6.4206 3.3505 44 1 2.2161 -9.0159 8.4701 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752860057.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:43 Heat of formation + Delta-G solvation = -25.232585 kcal Electronic energy + Delta-G solvation = -24780.467902 eV Core-core repulsion = 21053.442961 eV Total energy + Delta-G solvation = -3727.024941 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.62138 -39.24731 -37.78093 -35.45737 -34.42834 -33.09689 -32.38670 -31.30979 -29.65505 -29.28175 -27.63058 -25.94230 -25.33113 -24.09454 -22.04215 -21.38970 -20.87081 -20.12560 -17.81030 -17.23326 -17.11319 -16.17290 -16.12673 -16.00231 -15.42092 -14.95029 -14.76871 -14.73811 -14.23652 -13.95425 -13.78272 -13.65600 -13.43143 -13.24068 -13.18469 -12.99013 -12.87474 -12.81656 -12.65861 -12.50341 -12.28191 -12.00017 -11.62644 -11.28622 -11.17972 -11.04142 -10.97337 -10.75109 -10.72009 -9.76043 -9.31200 -9.06876 -9.03717 -8.78718 -8.70543 -8.17166 -6.44498 -6.17873 -3.87445 1.09188 2.30291 2.35911 3.12020 3.22475 3.24361 3.31259 3.37139 3.62321 3.72365 3.87985 4.24504 4.32347 4.42481 4.47923 4.62797 4.67430 4.86614 4.87534 4.98676 5.01241 5.15551 5.16460 5.17233 5.24119 5.27023 5.30602 5.37130 5.39659 5.60295 5.65331 5.69408 5.70780 5.77174 5.90985 5.98937 6.04024 6.23399 6.42882 6.73067 6.89449 7.46077 7.64024 7.90933 8.39709 8.75802 9.27608 10.89670 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011591 B = 0.002634 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.168068 B =10627.465864 C =12715.663958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.196 3.804 3 N -0.485 5.485 4 C -0.008 4.008 5 C -0.071 4.071 6 C -0.044 4.044 7 C 0.145 3.855 8 N -0.679 5.679 9 C 0.072 3.928 10 H 0.088 0.912 11 C -0.181 4.181 12 C 0.134 3.866 13 N -0.726 5.726 14 C 0.530 3.470 15 O -0.525 6.525 16 C -0.151 4.151 17 S -0.062 6.062 18 C -0.533 4.533 19 H 0.073 0.927 20 C 0.072 3.928 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 O -0.190 6.190 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.349 0.651 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.403 0.597 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.222 19.238 -21.257 28.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.011 4.011 3 N -0.216 5.216 4 C -0.129 4.129 5 C -0.128 4.128 6 C -0.098 4.098 7 C 0.016 3.984 8 N -0.312 5.312 9 C -0.038 4.038 10 H 0.106 0.894 11 C -0.241 4.241 12 C 0.009 3.991 13 N -0.380 5.380 14 C 0.316 3.684 15 O -0.400 6.400 16 C -0.302 4.302 17 S 0.164 5.836 18 C -0.681 4.681 19 H 0.091 0.909 20 C -0.137 4.137 21 N -0.504 5.504 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 O -0.077 6.077 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.119 0.881 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.168 0.832 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.237 0.763 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.000 19.066 -19.594 27.793 hybrid contribution -1.514 -0.404 -1.591 2.233 sum 3.486 18.662 -21.185 28.447 Atomic orbital electron populations 1.20288 0.81232 1.05452 1.04643 1.26260 0.96475 0.78617 0.99744 1.70353 1.01540 1.30389 1.19299 1.21522 0.93540 0.92093 1.05697 1.20110 0.91706 0.98241 1.02766 1.22902 0.83837 0.94260 1.08782 1.20257 0.88909 0.98039 0.91209 1.60522 1.36393 1.22435 1.11822 1.21879 0.87979 0.95015 0.98885 0.89359 1.22435 0.98784 1.00691 1.02171 1.21223 0.87414 0.94636 0.95819 1.45787 1.19397 1.49268 1.23536 1.20274 0.88608 0.78611 0.80893 1.90687 1.45108 1.62854 1.41314 1.23508 0.97086 1.02423 1.07189 1.85367 1.23928 1.56782 1.17490 1.22916 1.02480 1.33438 1.09285 0.90926 1.24998 0.98212 0.95909 0.94562 1.70039 1.36035 1.36020 1.08277 0.86119 0.82276 0.78919 0.78193 1.19621 1.20606 1.20593 1.84413 1.16386 1.37453 1.69413 0.88958 0.88996 0.88064 0.90762 0.90368 0.91105 0.91526 0.88847 0.83160 0.91094 0.92266 0.91741 0.91217 0.91759 0.76268 0.89327 0.89423 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.36 10.51 36.00 0.38 0.02 16 2 C 0.20 2.04 8.34 -12.95 -0.11 1.93 16 3 N -0.49 -5.65 11.29 -7.36 -0.08 -5.73 16 4 C -0.01 -0.08 7.11 -82.81 -0.59 -0.67 16 5 C -0.07 -0.47 10.05 36.01 0.36 -0.11 16 6 C -0.04 -0.43 6.90 -35.69 -0.25 -0.68 16 7 C 0.14 1.00 5.64 -4.98 -0.03 0.97 16 8 N -0.68 -5.25 5.68 -107.99 -0.61 -5.87 16 9 C 0.07 0.52 2.75 -67.71 -0.19 0.33 16 10 H 0.09 0.58 7.80 -51.93 -0.41 0.17 16 11 C -0.18 -0.97 9.16 37.16 0.34 -0.63 16 12 C 0.13 1.51 5.37 -4.05 -0.02 1.49 16 13 N -0.73 -10.14 5.39 -60.30 -0.32 -10.46 16 14 C 0.53 10.29 7.85 -10.98 -0.09 10.21 16 15 O -0.52 -12.24 15.86 5.56 0.09 -12.16 16 16 C -0.15 -3.19 6.16 36.00 0.22 -2.97 16 17 S -0.06 -1.73 20.57 -107.50 -2.21 -3.95 16 18 C -0.53 -15.47 9.50 30.94 0.29 -15.18 16 19 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 20 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.54 13.22 55.49 0.73 -25.81 16 22 Si 0.92 21.70 29.55 -169.99 -5.02 16.68 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 26 O -0.19 -2.16 10.78 5.36 0.06 -2.10 16 27 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.34 7.79 -51.93 -0.40 -0.06 16 33 H 0.07 0.32 7.09 -51.93 -0.37 -0.04 16 34 H 0.09 0.63 8.06 -51.93 -0.42 0.21 16 35 H 0.35 2.66 8.46 -39.29 -0.33 2.33 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.25 7.45 -51.93 -0.39 -0.14 16 38 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 39 H 0.07 0.82 8.14 -51.92 -0.42 0.39 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.40 4.91 8.14 -40.82 -0.33 4.58 16 42 H 0.09 1.76 8.14 -51.91 -0.42 1.34 16 43 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 44 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 388.93 15.07 5.86 5.86 Total: -1.00 -37.32 388.93 -8.12 -45.45 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.84 Total: 1.37 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 0.24 Total: -3.28 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: -0.29 Total: -47.87 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: 0.15 Total: -14.26 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.95 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.32 -8.12 -45.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752860057.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.214 kcal (2) G-P(sol) polarization free energy of solvation -37.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds