Wall clock time and date at job start Tue Mar 31 2020 15:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30254 * 125.62075 * 2 1 4 4 C 1.34475 * 108.70308 * 179.97438 * 3 2 1 5 5 C 1.50707 * 126.16684 * 179.97438 * 4 3 2 6 6 C 1.34325 * 107.67152 * 359.97438 * 4 3 2 7 7 C 1.50697 * 126.44914 * 180.02562 * 6 4 3 8 8 N 1.46901 * 109.46943 * 89.99914 * 7 6 4 9 9 C 1.46905 * 110.99870 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.47224 * 325.00460 * 9 8 7 11 11 C 1.53002 * 109.47102 * 85.00132 * 9 8 7 12 12 C 1.52996 * 109.46819 * 205.00022 * 9 8 7 13 13 N 1.46497 * 109.47185 * 55.00650 * 12 9 8 14 14 C 1.34786 * 119.99949 * 180.02562 * 13 12 9 15 15 O 1.21273 * 119.99946 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.99774 * 179.97438 * 14 13 12 17 17 S 1.81004 * 109.47006 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99967 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00502 * 359.97438 * 18 17 16 20 20 C 1.38799 * 120.00141 * 180.02562 * 18 17 16 21 21 N 1.31638 * 119.99602 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00405 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46959 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47208 * 119.99551 * 22 20 18 25 25 H 1.48502 * 109.47137 * 239.99876 * 22 20 18 26 26 O 1.33963 * 125.62172 * 180.28356 * 2 1 3 27 27 H 1.09005 * 109.46851 * 90.02680 * 1 2 3 28 28 H 1.08998 * 109.47220 * 210.02194 * 1 2 3 29 29 H 1.08996 * 109.47424 * 330.02840 * 1 2 3 30 30 H 1.08997 * 109.46992 * 269.99800 * 5 4 3 31 31 H 1.09006 * 109.46814 * 29.99643 * 5 4 3 32 32 H 1.08999 * 109.46860 * 149.99632 * 5 4 3 33 33 H 1.09004 * 109.46763 * 330.00355 * 7 6 4 34 34 H 1.08995 * 109.47483 * 210.00012 * 7 6 4 35 35 H 1.00901 * 111.00067 * 303.95401 * 8 7 6 36 36 H 1.08999 * 109.47105 * 180.02562 * 11 9 8 37 37 H 1.08996 * 109.46950 * 299.99914 * 11 9 8 38 38 H 1.09000 * 109.46959 * 59.99562 * 11 9 8 39 39 H 1.09012 * 109.46941 * 175.00030 * 12 9 8 40 40 H 1.08996 * 109.47415 * 294.99514 * 12 9 8 41 41 H 0.96993 * 120.00253 * 359.97438 * 13 12 9 42 42 H 1.09007 * 109.47025 * 299.98958 * 16 14 13 43 43 H 1.08997 * 109.47386 * 59.99267 * 16 14 13 44 44 H 0.96999 * 119.99268 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 0.0006 5 6 4.7571 1.5727 0.0002 6 6 3.5698 -0.6756 0.0015 7 6 4.7937 -1.5549 0.0029 8 7 5.1904 -1.8396 1.3884 9 6 6.3834 -2.6960 1.4290 10 1 6.3536 -3.4002 0.5975 11 6 7.6383 -1.8279 1.3174 12 6 6.4126 -3.4673 2.7500 13 7 5.1578 -4.2058 2.9121 14 6 4.9576 -4.9613 4.0102 15 8 5.8163 -5.0301 4.8638 16 6 3.6665 -5.7204 4.1773 17 16 3.7012 -6.6331 5.7400 18 6 2.1183 -7.4046 5.6789 19 1 1.4666 -7.2341 4.8347 20 6 1.7084 -8.2308 6.7162 21 7 2.5025 -8.4382 7.7454 22 14 0.0300 -9.0481 6.6518 23 1 -0.6635 -8.6567 5.3983 24 1 0.1962 -10.5234 6.6849 25 1 -0.7769 -8.6146 7.8207 26 8 2.2872 -1.0889 -0.0054 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3634 0.8902 0.5134 30 1 5.0478 1.7902 -1.0275 31 1 4.5128 2.5029 0.5133 32 1 5.5820 1.0797 0.5147 33 1 5.6084 -1.0444 -0.5107 34 1 4.5699 -2.4900 -0.5104 35 1 5.3410 -0.9856 1.9042 36 1 8.5235 -2.4633 1.3471 37 1 7.6174 -1.2783 0.3764 38 1 7.6680 -1.1236 2.1488 39 1 7.2480 -4.1676 2.7433 40 1 6.5319 -2.7674 3.5769 41 1 4.4708 -4.1505 2.2296 42 1 2.8314 -5.0200 4.1838 43 1 3.5471 -6.4206 3.3505 44 1 2.2161 -9.0159 8.4701 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752860057.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:43 Heat of formation + Delta-G solvation = -55.428117 kcal Electronic energy + Delta-G solvation = -24781.777279 eV Core-core repulsion = 21053.442961 eV Total energy + Delta-G solvation = -3728.334318 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.33544 -40.60905 -38.61522 -36.19061 -35.45629 -34.58342 -33.95694 -32.06676 -30.74134 -30.16487 -28.19047 -27.73377 -26.70662 -24.70787 -22.76219 -22.08244 -21.60012 -21.55267 -19.80188 -17.98872 -17.92811 -17.66263 -17.18793 -16.88070 -16.85702 -16.23621 -16.01300 -15.78174 -15.58847 -14.89210 -14.66870 -14.47849 -14.32495 -14.19692 -14.03551 -13.86199 -13.68346 -13.53671 -13.46575 -13.19668 -13.15697 -13.11934 -12.91674 -12.90052 -12.61304 -12.47914 -11.93200 -11.89062 -11.70095 -11.48571 -11.15655 -10.92228 -10.27291 -10.00754 -9.67065 -9.40768 -8.66312 -8.34666 -6.12568 0.39189 1.28085 1.41488 1.47813 1.59083 1.59751 1.67092 1.72894 2.27040 2.38497 2.99300 3.04534 3.16047 3.34439 3.71902 3.81911 3.85190 4.01204 4.11487 4.15235 4.29861 4.33920 4.35886 4.51463 4.51862 4.60278 4.64057 4.66754 4.71572 4.79887 4.81616 4.88996 4.90737 4.96173 5.11408 5.18341 5.29255 5.42036 5.42357 5.53060 5.88522 6.20265 6.27120 6.60753 6.74648 7.06560 7.32146 8.74942 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011591 B = 0.002634 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.168068 B =10627.465864 C =12715.663958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.184 3.816 3 N -0.517 5.517 4 C -0.023 4.023 5 C -0.069 4.069 6 C -0.055 4.055 7 C 0.151 3.849 8 N -0.693 5.693 9 C 0.087 3.913 10 H 0.103 0.897 11 C -0.176 4.176 12 C 0.129 3.871 13 N -0.699 5.699 14 C 0.530 3.470 15 O -0.571 6.571 16 C -0.128 4.128 17 S -0.150 6.150 18 C -0.545 4.545 19 H 0.081 0.919 20 C 0.012 3.988 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.257 1.257 24 H -0.273 1.273 25 H -0.273 1.273 26 O -0.209 6.209 27 H 0.110 0.890 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.350 0.650 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.052 0.948 41 H 0.415 0.585 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.578 19.773 -23.625 31.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.023 4.023 3 N -0.248 5.248 4 C -0.143 4.143 5 C -0.126 4.126 6 C -0.108 4.108 7 C 0.023 3.977 8 N -0.326 5.326 9 C -0.023 4.023 10 H 0.121 0.879 11 C -0.235 4.235 12 C 0.005 3.995 13 N -0.352 5.352 14 C 0.316 3.684 15 O -0.450 6.450 16 C -0.279 4.279 17 S 0.077 5.923 18 C -0.693 4.693 19 H 0.099 0.901 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.181 1.181 24 H -0.198 1.198 25 H -0.199 1.199 26 O -0.096 6.096 27 H 0.129 0.871 28 H 0.118 0.882 29 H 0.126 0.874 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.169 0.831 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.252 0.748 42 H 0.121 0.879 43 H 0.125 0.875 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.361 19.637 -22.022 29.826 hybrid contribution -1.270 -0.465 -0.934 1.644 sum 3.091 19.172 -22.956 30.069 Atomic orbital electron populations 1.20489 0.78910 1.06114 1.06023 1.27074 0.97843 0.78305 0.99049 1.70366 1.02672 1.31266 1.20524 1.22076 0.93897 0.92929 1.05440 1.20217 0.91044 0.97564 1.03783 1.23429 0.84013 0.94734 1.08626 1.20355 0.88450 0.98173 0.90768 1.60426 1.36748 1.22731 1.12658 1.21736 0.88865 0.95110 0.96589 0.87923 1.22390 0.97549 1.00394 1.03198 1.21474 0.85661 0.94401 0.97977 1.45589 1.20616 1.47309 1.21690 1.20019 0.87489 0.79125 0.81802 1.90674 1.46269 1.64752 1.43306 1.23352 0.98825 1.02361 1.03410 1.85528 1.24971 1.58650 1.23185 1.23229 1.02473 1.33755 1.09859 0.90098 1.26150 1.02836 0.96389 0.93870 1.70197 1.38473 1.36911 1.09222 0.84888 0.76407 0.77704 0.78828 1.18077 1.19805 1.19879 1.84410 1.17308 1.38116 1.69804 0.87132 0.88222 0.87403 0.89490 0.91002 0.89076 0.88826 0.88424 0.83092 0.90925 0.90189 0.91971 0.91481 0.92965 0.74825 0.87942 0.87492 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.66 10.51 71.24 0.75 0.09 16 2 C 0.18 3.74 8.34 88.34 0.74 4.47 16 3 N -0.52 -11.82 11.29 -291.99 -3.30 -15.12 16 4 C -0.02 -0.44 7.11 41.26 0.29 -0.14 16 5 C -0.07 -0.78 10.05 71.24 0.72 -0.07 16 6 C -0.06 -0.99 6.90 24.79 0.17 -0.82 16 7 C 0.15 1.66 5.64 85.56 0.48 2.14 16 8 N -0.69 -8.98 5.68 -495.57 -2.82 -11.79 16 9 C 0.09 1.01 2.75 44.91 0.12 1.13 16 10 H 0.10 0.97 7.80 -2.39 -0.02 0.95 16 11 C -0.18 -1.33 9.16 71.98 0.66 -0.68 16 12 C 0.13 2.72 5.37 86.38 0.46 3.18 16 13 N -0.70 -18.53 5.39 -463.06 -2.50 -21.02 16 14 C 0.53 20.44 7.85 87.65 0.69 21.13 16 15 O -0.57 -27.22 15.86 -3.01 -0.05 -27.26 16 16 C -0.13 -5.35 6.16 71.23 0.44 -4.91 16 17 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16 18 C -0.55 -31.83 9.50 67.95 0.65 -31.18 16 19 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 20 C 0.01 0.70 5.49 84.86 0.47 1.17 16 21 N -0.91 -56.75 13.22 21.65 0.29 -56.46 16 22 Si 1.00 44.23 29.55 68.60 2.03 46.26 16 23 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 26 O -0.21 -4.58 10.78 -3.74 -0.04 -4.62 16 27 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.09 0.62 7.79 -2.39 -0.02 0.60 16 33 H 0.09 0.54 7.09 -2.39 -0.02 0.52 16 34 H 0.10 1.01 8.06 -2.39 -0.02 0.99 16 35 H 0.35 4.55 8.46 -89.69 -0.76 3.79 16 36 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.08 0.33 7.45 -2.39 -0.02 0.31 16 38 H 0.06 0.53 8.13 -2.39 -0.02 0.51 16 39 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 40 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.41 9.15 8.14 -92.71 -0.75 8.40 16 42 H 0.10 3.98 8.14 -2.39 -0.02 3.96 16 43 H 0.11 4.03 8.14 -2.40 -0.02 4.01 16 44 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -83.86 388.93 -1.40 -85.26 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -0.49 Total: 19.00 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 6.63 Total: -4.49 kcal Atomic # 7 Polarization: -96.08 SS G_CDS: -8.32 Total: -104.40 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -0.09 Total: -31.89 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -83.86 -1.40 -85.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752860057.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.833 kcal (2) G-P(sol) polarization free energy of solvation -83.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds