Wall clock time and date at job start Tue Mar 31 2020 15:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30172 * 126.80244 * 2 1 4 4 O 1.20924 * 111.61017 * 180.02562 * 3 2 1 5 5 C 1.34047 * 111.55980 * 359.76483 * 4 3 2 6 6 C 1.50700 * 126.77345 * 180.28522 * 5 4 3 7 7 C 1.35451 * 106.44806 * 0.38088 * 5 4 3 8 8 C 1.50694 * 128.00740 * 179.91006 * 7 5 4 9 9 N 1.46905 * 109.47033 * 269.67973 * 8 7 5 10 10 C 1.46900 * 110.99850 * 293.95020 * 9 8 7 11 11 C 1.46906 * 111.00051 * 170.00053 * 9 8 7 12 12 C 1.52993 * 109.47378 * 189.99991 * 11 9 8 13 13 N 1.46496 * 109.47551 * 180.02562 * 12 11 9 14 14 C 1.34777 * 120.00258 * 180.02562 * 13 12 11 15 15 O 1.21279 * 120.00166 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.99757 * 179.97438 * 14 13 12 17 17 S 1.81003 * 109.46848 * 179.97438 * 16 14 13 18 18 C 1.76206 * 99.99904 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99972 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99695 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00104 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99570 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47083 * 60.00261 * 22 20 18 24 24 H 1.48505 * 109.46589 * 179.97438 * 22 20 18 25 25 H 1.48491 * 109.47322 * 299.99919 * 22 20 18 26 26 H 1.08996 * 109.46845 * 269.97007 * 1 2 3 27 27 H 1.09006 * 109.46885 * 29.96853 * 1 2 3 28 28 H 1.08992 * 109.47046 * 149.96990 * 1 2 3 29 29 H 1.09001 * 109.47340 * 270.10976 * 6 5 4 30 30 H 1.09000 * 109.47379 * 30.11316 * 6 5 4 31 31 H 1.09005 * 109.46956 * 150.11868 * 6 5 4 32 32 H 1.08997 * 109.47644 * 149.68094 * 8 7 5 33 33 H 1.09000 * 109.47199 * 29.67371 * 8 7 5 34 34 H 1.08996 * 109.47030 * 296.04770 * 10 9 8 35 35 H 1.08999 * 109.46702 * 56.04909 * 10 9 8 36 36 H 1.08996 * 109.46890 * 176.04778 * 10 9 8 37 37 H 1.09004 * 109.47040 * 309.99779 * 11 9 8 38 38 H 1.09000 * 109.47033 * 69.99731 * 11 9 8 39 39 H 1.09004 * 109.46862 * 299.99897 * 12 11 9 40 40 H 1.09004 * 109.46998 * 59.99419 * 12 11 9 41 41 H 0.96999 * 119.99694 * 359.97438 * 13 12 11 42 42 H 1.08996 * 109.47390 * 299.99902 * 16 14 13 43 43 H 1.09004 * 109.47662 * 59.99777 * 16 14 13 44 44 H 0.97002 * 119.99547 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7254 -0.0005 5 6 3.6025 -0.6068 0.0042 6 6 4.9022 -1.3695 0.0112 7 6 2.3540 -1.1320 -0.0007 8 6 1.9591 -2.5863 -0.0003 9 7 1.8296 -3.0589 -1.3852 10 6 0.7111 -2.3933 -2.0662 11 6 1.6797 -4.5196 -1.4312 12 6 1.7980 -4.9991 -2.8792 13 7 1.6480 -6.4557 -2.9252 14 6 1.7174 -7.1034 -4.1050 15 8 1.9037 -6.4805 -5.1288 16 6 1.5636 -8.6018 -4.1521 17 16 1.7034 -9.1690 -5.8653 18 6 1.4926 -10.9027 -5.6317 19 1 1.3353 -11.2987 -4.6393 20 6 1.5297 -11.7596 -6.7230 21 7 1.7220 -11.2770 -7.9325 22 14 1.3069 -13.5977 -6.4753 23 1 -0.0197 -13.8570 -5.8605 24 1 1.3870 -14.2873 -7.7881 25 1 2.3757 -14.1097 -5.5806 26 1 -0.3633 -0.0005 1.0276 27 1 -0.3633 0.8903 -0.5134 28 1 -0.3633 -0.8897 -0.5143 29 1 5.2202 -1.5549 -1.0148 30 1 5.6637 -0.7851 0.5276 31 1 4.7627 -2.3203 0.5257 32 1 1.0054 -2.7038 0.5143 33 1 2.7232 -3.1702 0.5128 34 1 -0.2248 -2.6642 -1.5775 35 1 0.8471 -1.3130 -2.0173 36 1 0.6810 -2.7089 -3.1090 37 1 2.4611 -4.9841 -0.8297 38 1 0.7029 -4.7973 -1.0351 39 1 1.0166 -4.5346 -3.4807 40 1 2.7749 -4.7214 -3.2753 41 1 1.4993 -6.9539 -2.1064 42 1 2.3447 -9.0663 -3.5503 43 1 0.5867 -8.8794 -3.7564 44 1 1.7475 -11.8758 -8.6952 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753041779.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:39 Heat of formation + Delta-G solvation = 23.942426 kcal Electronic energy + Delta-G solvation = -24503.965430 eV Core-core repulsion = 20779.072877 eV Total energy + Delta-G solvation = -3724.892553 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.24804 -39.34585 -38.32389 -35.45224 -34.27219 -33.76261 -32.43446 -30.48627 -29.46511 -28.81611 -27.97141 -27.33698 -25.52076 -24.75129 -22.02560 -21.29006 -20.45375 -20.32129 -18.03810 -17.85573 -17.32782 -16.52017 -16.22058 -16.12609 -15.33021 -15.15555 -14.98010 -14.80876 -14.36990 -14.06993 -13.89245 -13.82939 -13.65112 -13.44075 -13.18695 -13.10251 -13.01517 -12.58013 -12.52471 -12.29926 -12.19963 -11.92570 -11.71764 -11.33428 -11.24901 -11.05328 -11.04482 -10.77822 -10.24817 -9.83424 -9.55510 -9.41936 -9.07085 -8.89802 -8.79596 -8.24710 -6.50813 -6.22107 -3.92918 1.12798 1.78984 2.76529 2.95862 3.09098 3.22789 3.25204 3.28534 3.51824 3.79329 3.92243 4.07911 4.19834 4.38293 4.50122 4.59214 4.76223 4.85703 4.88250 5.00666 5.02564 5.05549 5.10892 5.12856 5.14993 5.16965 5.23514 5.26039 5.34065 5.43488 5.54030 5.59528 5.66517 5.73709 5.78803 5.88392 5.91160 6.12315 6.47826 6.52891 6.65970 7.58448 7.67719 7.95850 8.34277 8.60056 9.22935 10.85218 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.034352 B = 0.001735 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.906433 B =16130.254732 C =16302.498512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.025 3.975 3 N -0.368 5.368 4 O 0.094 5.906 5 C -0.008 4.008 6 C -0.073 4.073 7 C -0.199 4.199 8 C 0.135 3.865 9 N -0.532 5.532 10 C 0.014 3.986 11 C 0.046 3.954 12 C 0.124 3.876 13 N -0.740 5.740 14 C 0.532 3.468 15 O -0.516 6.516 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.030 0.970 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.043 0.957 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.397 0.603 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.619 19.773 21.673 29.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.134 4.134 3 N -0.075 5.075 4 O 0.030 5.970 5 C -0.073 4.073 6 C -0.130 4.130 7 C -0.203 4.203 8 C 0.007 3.993 9 N -0.257 5.257 10 C -0.134 4.134 11 C -0.083 4.083 12 C 0.000 4.000 13 N -0.395 5.395 14 C 0.318 3.682 15 O -0.390 6.390 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.199 1.199 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.048 0.952 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.230 0.770 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.171 22.234 19.497 29.595 hybrid contribution -1.305 -3.050 2.157 3.957 sum -0.134 19.184 21.654 28.930 Atomic orbital electron populations 1.20339 0.86207 1.04121 1.03453 1.23428 0.98777 0.88602 1.02593 1.73851 0.89300 1.23918 1.20414 1.84814 1.21601 1.22638 1.67901 1.24302 0.98347 0.83581 1.01020 1.20359 0.89724 0.98312 1.04626 1.20689 0.91712 0.96793 1.11147 1.20232 1.00835 0.88767 0.89425 1.61842 1.44072 1.04779 1.14991 1.22665 0.90829 0.99969 0.99945 1.22277 1.01065 0.87581 0.97332 1.21175 1.02958 0.80451 0.95427 1.45914 1.76523 1.07343 1.09733 1.20288 0.75524 0.89568 0.82786 1.90711 1.46563 1.68503 1.33180 1.23527 1.04831 0.93554 1.08462 1.85418 1.94635 1.05378 0.97912 1.22827 1.57521 0.91819 0.96303 0.90974 1.24997 0.94587 0.99567 0.94448 1.70010 1.46047 1.35761 0.98432 0.86223 0.78838 0.82809 0.77613 1.19961 1.20807 1.19936 0.90220 0.90354 0.89802 0.88806 0.90021 0.89071 0.93237 0.89266 0.95150 0.90998 0.90436 0.89872 0.93904 0.91630 0.90684 0.76963 0.89192 0.89256 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 9.93 36.01 0.36 -0.18 16 2 C 0.03 0.23 6.41 -82.10 -0.53 -0.30 16 3 N -0.37 -4.07 12.07 33.42 0.40 -3.66 16 4 O 0.09 0.95 11.20 17.16 0.19 1.14 16 5 C -0.01 -0.07 7.49 -35.30 -0.26 -0.33 16 6 C -0.07 -0.34 10.30 36.01 0.37 0.03 16 7 C -0.20 -1.60 5.11 -104.43 -0.53 -2.14 16 8 C 0.14 0.87 5.29 -4.98 -0.03 0.85 16 9 N -0.53 -4.13 4.75 -244.37 -1.16 -5.30 16 10 C 0.01 0.11 7.93 60.06 0.48 0.58 16 11 C 0.05 0.34 5.07 -3.82 -0.02 0.32 16 12 C 0.12 1.38 5.60 -4.05 -0.02 1.36 16 13 N -0.74 -9.29 5.56 -60.30 -0.33 -9.62 16 14 C 0.53 9.72 7.85 -10.99 -0.09 9.63 16 15 O -0.52 -11.66 15.86 5.56 0.09 -11.57 16 16 C -0.15 -3.02 6.16 36.00 0.22 -2.80 16 17 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 18 C -0.54 -15.16 9.50 30.94 0.29 -14.87 16 19 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 20 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.05 13.22 55.49 0.73 -25.32 16 22 Si 0.92 21.23 29.55 -169.99 -5.02 16.21 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.45 5.50 -51.93 -0.29 0.17 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.31 7.44 -51.93 -0.39 -0.08 16 32 H 0.05 0.29 8.12 -51.93 -0.42 -0.13 16 33 H 0.09 0.45 7.23 -51.93 -0.38 0.08 16 34 H 0.03 0.21 7.57 -51.93 -0.39 -0.19 16 35 H 0.07 0.59 5.32 -51.93 -0.28 0.32 16 36 H 0.08 0.68 6.47 -51.93 -0.34 0.35 16 37 H 0.08 0.52 7.93 -51.93 -0.41 0.10 16 38 H 0.04 0.29 8.12 -51.93 -0.42 -0.13 16 39 H 0.07 0.81 6.55 -51.93 -0.34 0.47 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.40 3.68 8.47 -40.82 -0.35 3.33 16 42 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 43 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 44 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 378.06 15.07 5.70 5.70 Total: -1.00 -35.88 378.06 -7.97 -43.85 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -6.50 Total: -1.75 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: 0.15 Total: -5.85 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: -0.36 Total: -43.90 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.28 Total: -10.43 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.88 -7.97 -43.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753041779.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.793 kcal (2) G-P(sol) polarization free energy of solvation -35.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds