Wall clock time and date at job start Tue Mar 31 2020 15:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30172 * 126.80244 * 2 1 4 4 O 1.20924 * 111.61017 * 180.02562 * 3 2 1 5 5 C 1.34047 * 111.55980 * 359.76483 * 4 3 2 6 6 C 1.50700 * 126.77345 * 180.28522 * 5 4 3 7 7 C 1.35451 * 106.44806 * 0.38088 * 5 4 3 8 8 C 1.50694 * 128.00740 * 179.91006 * 7 5 4 9 9 N 1.46905 * 109.47033 * 269.67973 * 8 7 5 10 10 C 1.46900 * 110.99850 * 293.95020 * 9 8 7 11 11 C 1.46906 * 111.00051 * 170.00053 * 9 8 7 12 12 C 1.52993 * 109.47378 * 189.99991 * 11 9 8 13 13 N 1.46496 * 109.47551 * 180.02562 * 12 11 9 14 14 C 1.34777 * 120.00258 * 180.02562 * 13 12 11 15 15 O 1.21279 * 120.00166 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.99757 * 179.97438 * 14 13 12 17 17 S 1.81003 * 109.46848 * 179.97438 * 16 14 13 18 18 C 1.76206 * 99.99904 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99972 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99695 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00104 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99570 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47083 * 60.00261 * 22 20 18 24 24 H 1.48505 * 109.46589 * 179.97438 * 22 20 18 25 25 H 1.48491 * 109.47322 * 299.99919 * 22 20 18 26 26 H 1.08996 * 109.46845 * 269.97007 * 1 2 3 27 27 H 1.09006 * 109.46885 * 29.96853 * 1 2 3 28 28 H 1.08992 * 109.47046 * 149.96990 * 1 2 3 29 29 H 1.09001 * 109.47340 * 270.10976 * 6 5 4 30 30 H 1.09000 * 109.47379 * 30.11316 * 6 5 4 31 31 H 1.09005 * 109.46956 * 150.11868 * 6 5 4 32 32 H 1.08997 * 109.47644 * 149.68094 * 8 7 5 33 33 H 1.09000 * 109.47199 * 29.67371 * 8 7 5 34 34 H 1.08996 * 109.47030 * 296.04770 * 10 9 8 35 35 H 1.08999 * 109.46702 * 56.04909 * 10 9 8 36 36 H 1.08996 * 109.46890 * 176.04778 * 10 9 8 37 37 H 1.09004 * 109.47040 * 309.99779 * 11 9 8 38 38 H 1.09000 * 109.47033 * 69.99731 * 11 9 8 39 39 H 1.09004 * 109.46862 * 299.99897 * 12 11 9 40 40 H 1.09004 * 109.46998 * 59.99419 * 12 11 9 41 41 H 0.96999 * 119.99694 * 359.97438 * 13 12 11 42 42 H 1.08996 * 109.47390 * 299.99902 * 16 14 13 43 43 H 1.09004 * 109.47662 * 59.99777 * 16 14 13 44 44 H 0.97002 * 119.99547 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7254 -0.0005 5 6 3.6025 -0.6068 0.0042 6 6 4.9022 -1.3695 0.0112 7 6 2.3540 -1.1320 -0.0007 8 6 1.9591 -2.5863 -0.0003 9 7 1.8296 -3.0589 -1.3852 10 6 0.7111 -2.3933 -2.0662 11 6 1.6797 -4.5196 -1.4312 12 6 1.7980 -4.9991 -2.8792 13 7 1.6480 -6.4557 -2.9252 14 6 1.7174 -7.1034 -4.1050 15 8 1.9037 -6.4805 -5.1288 16 6 1.5636 -8.6018 -4.1521 17 16 1.7034 -9.1690 -5.8653 18 6 1.4926 -10.9027 -5.6317 19 1 1.3353 -11.2987 -4.6393 20 6 1.5297 -11.7596 -6.7230 21 7 1.7220 -11.2770 -7.9325 22 14 1.3069 -13.5977 -6.4753 23 1 -0.0197 -13.8570 -5.8605 24 1 1.3870 -14.2873 -7.7881 25 1 2.3757 -14.1097 -5.5806 26 1 -0.3633 -0.0005 1.0276 27 1 -0.3633 0.8903 -0.5134 28 1 -0.3633 -0.8897 -0.5143 29 1 5.2202 -1.5549 -1.0148 30 1 5.6637 -0.7851 0.5276 31 1 4.7627 -2.3203 0.5257 32 1 1.0054 -2.7038 0.5143 33 1 2.7232 -3.1702 0.5128 34 1 -0.2248 -2.6642 -1.5775 35 1 0.8471 -1.3130 -2.0173 36 1 0.6810 -2.7089 -3.1090 37 1 2.4611 -4.9841 -0.8297 38 1 0.7029 -4.7973 -1.0351 39 1 1.0166 -4.5346 -3.4807 40 1 2.7749 -4.7214 -3.2753 41 1 1.4993 -6.9539 -2.1064 42 1 2.3447 -9.0663 -3.5503 43 1 0.5867 -8.8794 -3.7564 44 1 1.7475 -11.8758 -8.6952 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753041779.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:38 Heat of formation + Delta-G solvation = -2.737873 kcal Electronic energy + Delta-G solvation = -24505.122374 eV Core-core repulsion = 20779.072877 eV Total energy + Delta-G solvation = -3726.049497 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.90052 -40.63869 -39.06667 -36.30338 -35.18632 -34.56585 -34.39293 -31.70438 -30.04319 -29.67554 -28.75418 -27.89639 -27.62372 -25.55333 -22.76118 -22.02096 -21.63906 -20.97473 -19.80865 -18.71257 -18.00367 -17.81529 -17.30678 -16.97021 -16.86018 -16.30164 -16.23064 -15.74253 -15.52004 -15.11072 -14.76486 -14.60291 -14.47491 -14.31896 -14.22460 -13.83955 -13.68889 -13.56025 -13.48828 -13.15176 -13.06838 -12.85498 -12.84137 -12.66968 -12.60892 -12.39841 -12.15243 -11.82894 -11.72873 -11.11175 -10.98781 -10.86394 -10.25457 -10.14039 -10.08726 -9.34728 -8.65070 -8.32764 -6.10969 0.51628 1.16068 1.29178 1.45453 1.48743 1.58149 1.63966 2.19582 2.26302 2.30168 3.01263 3.11441 3.23523 3.36462 3.54095 3.82449 3.90001 3.98182 4.08045 4.11104 4.33766 4.34278 4.39608 4.45826 4.51708 4.54123 4.58740 4.62592 4.65945 4.74075 4.78925 4.82659 4.92028 4.96878 4.97873 5.05639 5.17666 5.31495 5.42592 5.43597 5.96526 6.00055 6.21373 6.53930 7.08366 7.28071 7.32341 8.76105 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.034352 B = 0.001735 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.906433 B =16130.254732 C =16302.498512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.020 3.980 3 N -0.405 5.405 4 O 0.074 5.926 5 C -0.011 4.011 6 C -0.072 4.072 7 C -0.208 4.208 8 C 0.139 3.861 9 N -0.544 5.544 10 C 0.016 3.984 11 C 0.058 3.942 12 C 0.126 3.874 13 N -0.710 5.710 14 C 0.533 3.467 15 O -0.568 6.568 16 C -0.128 4.128 17 S -0.156 6.156 18 C -0.546 4.546 19 H 0.085 0.915 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.262 1.262 24 H -0.280 1.280 25 H -0.261 1.261 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.045 0.955 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.105 0.895 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.418 0.582 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.253 18.169 24.741 30.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.140 4.140 3 N -0.115 5.115 4 O 0.014 5.986 5 C -0.075 4.075 6 C -0.129 4.129 7 C -0.212 4.212 8 C 0.012 3.988 9 N -0.269 5.269 10 C -0.132 4.132 11 C -0.070 4.070 12 C 0.001 3.999 13 N -0.365 5.365 14 C 0.319 3.681 15 O -0.446 6.446 16 C -0.279 4.279 17 S 0.071 5.929 18 C -0.693 4.693 19 H 0.103 0.897 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.186 1.186 24 H -0.206 1.206 25 H -0.186 1.186 26 H 0.111 0.889 27 H 0.094 0.906 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.128 0.872 32 H 0.080 0.920 33 H 0.127 0.873 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.124 0.876 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.256 0.744 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.816 20.640 22.643 30.649 hybrid contribution -1.181 -2.430 1.285 2.992 sum -0.365 18.210 23.928 30.071 Atomic orbital electron populations 1.20434 0.84687 1.04504 1.04416 1.23938 0.99930 0.88689 1.01398 1.73840 0.89901 1.25299 1.22492 1.84766 1.21451 1.23911 1.68517 1.24962 0.99793 0.82963 0.99806 1.20526 0.88511 0.98853 1.05009 1.20955 0.91490 0.97486 1.11296 1.20306 1.02127 0.87750 0.88619 1.61763 1.44152 1.04912 1.16068 1.22601 0.91717 0.99553 0.99330 1.22167 1.02866 0.87440 0.94541 1.21236 1.01515 0.78967 0.98133 1.45584 1.73999 1.08147 1.08745 1.20068 0.75432 0.88964 0.83628 1.90703 1.49383 1.69161 1.35374 1.23363 1.06834 0.94717 1.03018 1.85630 1.95054 1.06682 1.05513 1.23179 1.57277 0.91871 0.97016 0.89738 1.26149 0.93934 1.05249 0.93964 1.70186 1.47360 1.37741 0.99533 0.84999 0.79467 0.75716 0.77780 1.18632 1.20566 1.18569 0.88866 0.90648 0.88711 0.88823 0.88779 0.87188 0.92010 0.87252 0.93699 0.91741 0.92011 0.87645 0.92210 0.93000 0.92429 0.74441 0.86942 0.87055 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 9.93 71.24 0.71 -0.26 16 2 C 0.02 0.34 6.41 43.58 0.28 0.62 16 3 N -0.41 -9.10 12.07 -49.54 -0.60 -9.69 16 4 O 0.07 1.52 11.20 71.57 0.80 2.32 16 5 C -0.01 -0.17 7.49 25.04 0.19 0.02 16 6 C -0.07 -0.53 10.30 71.24 0.73 0.20 16 7 C -0.21 -3.03 5.11 -19.74 -0.10 -3.13 16 8 C 0.14 1.36 5.29 85.55 0.45 1.81 16 9 N -0.54 -7.07 4.75 -927.06 -4.41 -11.48 16 10 C 0.02 0.23 7.93 127.69 1.01 1.24 16 11 C 0.06 0.65 5.07 86.30 0.44 1.09 16 12 C 0.13 2.56 5.60 86.38 0.48 3.05 16 13 N -0.71 -16.01 5.56 -463.08 -2.57 -18.58 16 14 C 0.53 18.91 7.85 87.66 0.69 19.60 16 15 O -0.57 -26.14 15.86 -3.03 -0.05 -26.19 16 16 C -0.13 -4.86 6.16 71.23 0.44 -4.42 16 17 S -0.16 -8.57 20.57 -56.49 -1.16 -9.73 16 18 C -0.55 -30.72 9.50 67.96 0.65 -30.07 16 19 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 20 C 0.01 0.66 5.49 84.86 0.47 1.13 16 21 N -0.91 -55.81 13.22 21.65 0.29 -55.53 16 22 Si 1.00 42.99 29.55 68.60 2.03 45.02 16 23 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 24 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 26 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.09 0.86 5.50 -2.39 -0.01 0.85 16 29 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.11 0.40 7.44 -2.38 -0.02 0.38 16 32 H 0.06 0.48 8.12 -2.39 -0.02 0.46 16 33 H 0.11 0.64 7.23 -2.39 -0.02 0.62 16 34 H 0.04 0.50 7.57 -2.39 -0.02 0.48 16 35 H 0.06 1.02 5.32 -2.39 -0.01 1.01 16 36 H 0.06 1.07 6.47 -2.39 -0.02 1.05 16 37 H 0.11 0.79 7.93 -2.38 -0.02 0.77 16 38 H 0.06 0.53 8.12 -2.39 -0.02 0.51 16 39 H 0.05 1.24 6.55 -2.38 -0.02 1.22 16 40 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.42 6.02 8.47 -92.71 -0.79 5.23 16 42 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 43 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 44 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -81.64 378.06 1.00 -80.65 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.24 Total: 12.33 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: 6.43 Total: -9.12 kcal Atomic # 7 Polarization: -87.99 SS G_CDS: -7.29 Total: -95.28 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: 0.75 Total: -23.87 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -81.64 1.00 -80.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753041779.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.908 kcal (2) G-P(sol) polarization free energy of solvation -81.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds