Wall clock time and date at job start Tue Mar 31 2020 15:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.77222 * 127.34130 * 2 1 4 4 C 1.72216 * 94.84807 * 179.80666 * 3 2 1 5 5 O 1.21821 * 127.05598 * 180.20332 * 4 3 2 6 6 N 1.34246 * 105.88111 * 0.31871 * 4 3 2 7 7 C 1.46503 * 121.37947 * 179.88390 * 6 4 3 8 8 C 1.50700 * 109.46707 * 269.71978 * 7 6 4 9 9 O 1.21277 * 120.00478 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99623 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00109 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47391 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.47112 * 305.00167 * 12 11 10 14 14 C 1.53001 * 109.47100 * 64.99897 * 12 11 10 15 15 C 1.53003 * 109.47014 * 184.99488 * 12 11 10 16 16 N 1.46499 * 109.46708 * 174.99880 * 15 12 11 17 17 C 1.36935 * 119.99926 * 180.02562 * 16 15 12 18 18 H 1.08005 * 119.99877 * 359.97438 * 17 16 15 19 19 C 1.38811 * 120.00369 * 179.73019 * 17 16 15 20 20 N 1.31617 * 119.99773 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47045 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47426 * 119.99572 * 21 19 17 24 24 H 1.48501 * 109.46833 * 239.99815 * 21 19 17 25 25 C 1.32564 * 127.33857 * 179.97438 * 2 1 3 26 26 C 1.50709 * 121.64639 * 0.03323 * 25 2 1 27 27 H 1.08994 * 109.47942 * 270.00423 * 1 2 3 28 28 H 1.09008 * 109.46665 * 30.01069 * 1 2 3 29 29 H 1.09007 * 109.47198 * 150.00117 * 1 2 3 30 30 H 1.08996 * 109.47079 * 149.71852 * 7 6 4 31 31 H 1.09005 * 109.46790 * 29.71538 * 7 6 4 32 32 H 0.97005 * 120.00431 * 359.97438 * 10 8 7 33 33 H 1.09001 * 109.47266 * 59.99449 * 11 10 8 34 34 H 1.08997 * 109.46950 * 299.99791 * 11 10 8 35 35 H 1.08999 * 109.47109 * 59.99648 * 14 12 11 36 36 H 1.08996 * 109.47478 * 180.02562 * 14 12 11 37 37 H 1.09005 * 109.47003 * 300.00163 * 14 12 11 38 38 H 1.08998 * 109.46692 * 55.00382 * 15 12 11 39 39 H 1.08994 * 109.47584 * 295.00246 * 15 12 11 40 40 H 0.97005 * 120.00261 * 0.02562 * 16 15 12 41 41 H 0.97004 * 120.00382 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.46522 * 269.97274 * 26 25 2 43 43 H 1.08997 * 109.47077 * 29.97156 * 26 25 2 44 44 H 1.08998 * 109.47198 * 149.97116 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5820 1.4090 0.0000 4 6 4.0345 0.4838 0.0058 5 8 5.1759 0.9095 0.0114 6 7 3.6507 -0.8026 0.0002 7 6 4.6312 -1.8912 0.0004 8 6 4.9675 -2.2644 -1.4204 9 8 4.4398 -1.6792 -2.3423 10 7 5.8547 -3.2486 -1.6666 11 6 6.1820 -3.6112 -3.0477 12 6 7.2069 -4.7472 -3.0476 13 1 8.0752 -4.4532 -2.4580 14 6 6.5776 -6.0017 -2.4382 15 6 7.6420 -5.0417 -4.4846 16 7 8.7091 -6.0454 -4.4757 17 6 9.2605 -6.4689 -5.6554 18 1 8.9084 -6.0633 -6.5924 19 6 10.2755 -7.4158 -5.6467 20 7 10.7083 -7.9061 -4.5045 21 14 11.0283 -7.9931 -7.2559 22 1 10.3709 -7.2935 -8.3889 23 1 12.4813 -7.6870 -7.2607 24 1 10.8305 -9.4580 -7.3974 25 6 2.3110 -1.0540 0.0005 26 6 1.7706 -2.4608 0.0004 27 1 -0.3635 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5140 29 1 -0.3634 -0.8900 -0.5138 30 1 4.2131 -2.7567 0.5142 31 1 5.5357 -1.5654 0.5142 32 1 6.2771 -3.7165 -0.9293 33 1 6.6000 -2.7454 -3.5614 34 1 5.2779 -3.9371 -3.5618 35 1 5.7093 -6.2957 -3.0277 36 1 7.3078 -6.8109 -2.4377 37 1 6.2676 -5.7919 -1.4144 38 1 8.0085 -4.1258 -4.9481 39 1 6.7916 -5.4205 -5.0514 40 1 9.0251 -6.4099 -3.6341 41 1 11.4178 -8.5675 -4.4983 42 1 1.6403 -2.8000 1.0280 43 1 0.8095 -2.4808 -0.5135 44 1 2.4710 -3.1191 -0.5135 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753644507.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:40 Heat of formation + Delta-G solvation = -36.641735 kcal Electronic energy + Delta-G solvation = -25149.659877 eV Core-core repulsion = 21422.140198 eV Total energy + Delta-G solvation = -3727.519679 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.55535 -39.51945 -37.95181 -36.90440 -34.48313 -33.95995 -32.63103 -30.74583 -30.10513 -29.58000 -26.69958 -25.71896 -25.03095 -23.77665 -22.42454 -20.92634 -20.25338 -19.84460 -18.56527 -17.93431 -17.36436 -16.98963 -16.13566 -15.98840 -15.61888 -15.41336 -14.66728 -14.53019 -14.33752 -14.24087 -13.95136 -13.92984 -13.69349 -13.37330 -13.14847 -13.00405 -12.92394 -12.63747 -12.48923 -12.27082 -12.10309 -11.74698 -11.24567 -11.11742 -10.96533 -10.77349 -10.64199 -10.52515 -10.37040 -10.31228 -10.02957 -9.74254 -9.58605 -9.21217 -8.91430 -8.16274 -6.95830 -5.80281 -3.08783 0.65711 1.07532 1.43434 1.81824 2.29258 2.35242 3.01589 3.41578 3.47679 3.49675 4.05987 4.31409 4.38611 4.56277 4.57557 4.63909 4.75816 4.91510 4.94465 4.96558 5.13478 5.15855 5.23957 5.30152 5.40874 5.46192 5.54495 5.71707 5.82728 5.87133 5.90446 6.02698 6.15179 6.29250 6.35341 6.36484 6.58814 6.71692 6.80483 7.00708 7.25101 7.68285 7.93073 8.38786 9.50256 10.06893 10.41683 11.42739 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.030537 B = 0.001978 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.714077 B =14150.315226 C =14419.086242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.208 4.208 3 S 0.006 5.994 4 C 0.488 3.512 5 O -0.471 6.471 6 N -0.514 5.514 7 C 0.080 3.920 8 C 0.495 3.505 9 O -0.526 6.526 10 N -0.719 5.719 11 C 0.127 3.873 12 C -0.111 4.111 13 H 0.077 0.923 14 C -0.141 4.141 15 C 0.160 3.840 16 N -0.731 5.731 17 C -0.238 4.238 18 H 0.071 0.929 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.908 3.092 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.104 3.896 26 C -0.100 4.100 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.402 0.598 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.041 0.959 38 H 0.021 0.979 39 H 0.022 0.978 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.862 12.599 16.165 30.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.328 4.328 3 S 0.249 5.751 4 C 0.170 3.830 5 O -0.350 6.350 6 N -0.235 5.235 7 C -0.049 4.049 8 C 0.278 3.722 9 O -0.402 6.402 10 N -0.371 5.371 11 C 0.004 3.996 12 C -0.130 4.130 13 H 0.096 0.904 14 C -0.198 4.198 15 C 0.032 3.968 16 N -0.375 5.375 17 C -0.370 4.370 18 H 0.089 0.911 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.006 4.006 26 C -0.159 4.159 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.237 0.763 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.039 0.961 39 H 0.040 0.960 40 H 0.218 0.782 41 H 0.064 0.936 42 H 0.105 0.895 43 H 0.111 0.889 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -22.650 14.628 15.292 30.997 hybrid contribution 1.319 -2.107 -0.327 2.508 sum -21.330 12.521 14.965 28.908 Atomic orbital electron populations 1.20114 0.85655 1.03440 1.02774 1.23449 0.99688 0.92103 1.17516 1.85075 0.97724 1.11051 1.81205 1.21506 0.94689 0.84596 0.82239 1.90976 1.19272 1.71669 1.53105 1.45534 1.05719 1.06933 1.65267 1.21714 0.95088 0.91686 0.96458 1.20675 0.80034 0.80369 0.91113 1.90765 1.51820 1.51979 1.45607 1.45988 1.44034 1.36973 1.10109 1.21461 0.98912 0.97948 0.81290 1.21563 0.97343 0.94266 0.99812 0.90425 1.21791 1.01284 0.98033 0.98718 1.20570 0.91798 0.92823 0.91588 1.42340 1.41309 1.47101 1.06787 1.19282 1.13570 1.17716 0.86393 0.91091 1.24744 0.99498 0.99926 0.96918 1.69663 1.31549 1.33287 1.23797 0.86100 0.78902 0.78225 0.82876 1.20529 1.21859 1.21859 1.19184 0.81756 0.98214 1.01401 1.20774 1.02436 0.89081 1.03634 0.90629 0.90799 0.90261 0.85893 0.85692 0.76300 0.91231 0.91171 0.92798 0.91058 0.93954 0.96112 0.95979 0.78207 0.93563 0.89522 0.88931 0.90760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.28 10.10 36.01 0.36 0.09 16 2 C -0.21 -1.66 6.72 -36.22 -0.24 -1.91 16 3 S 0.01 0.06 22.97 -107.50 -2.47 -2.41 16 4 C 0.49 6.40 8.27 53.82 0.45 6.85 16 5 O -0.47 -7.64 17.55 5.08 0.09 -7.55 16 6 N -0.51 -5.36 2.09 -118.56 -0.25 -5.61 16 7 C 0.08 0.67 5.47 -5.19 -0.03 0.64 16 8 C 0.49 5.81 7.63 -10.99 -0.08 5.73 16 9 O -0.53 -8.56 16.43 5.56 0.09 -8.46 16 10 N -0.72 -7.53 5.28 -60.30 -0.32 -7.84 16 11 C 0.13 1.67 5.06 -4.04 -0.02 1.65 16 12 C -0.11 -1.62 2.46 -90.62 -0.22 -1.85 16 13 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 14 C -0.14 -1.91 8.94 37.16 0.33 -1.58 16 15 C 0.16 3.13 5.65 -4.04 -0.02 3.10 16 16 N -0.73 -18.08 5.33 -59.91 -0.32 -18.39 16 17 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 18 H 0.07 1.94 7.83 -52.48 -0.41 1.52 16 19 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 20 N -0.93 -27.93 13.06 55.49 0.72 -27.21 16 21 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 25 C 0.10 0.86 6.59 -82.51 -0.54 0.32 16 26 C -0.10 -0.49 9.07 36.01 0.33 -0.16 16 27 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 29 H 0.08 0.25 6.77 -51.92 -0.35 -0.10 16 30 H 0.12 0.53 6.83 -51.93 -0.35 0.18 16 31 H 0.13 0.96 7.80 -51.93 -0.40 0.55 16 32 H 0.40 3.09 7.66 -40.82 -0.31 2.78 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.16 7.18 -51.93 -0.37 0.79 16 37 H 0.04 0.44 7.18 -51.93 -0.37 0.06 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.38 9.84 6.85 -40.82 -0.28 9.56 16 41 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.09 0.34 6.69 -51.93 -0.35 0.00 16 44 H 0.07 0.41 6.70 -51.93 -0.35 0.07 16 LS Contribution 378.11 15.07 5.70 5.70 Total: -1.00 -36.43 378.11 -8.21 -44.64 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -6.49 Total: 4.21 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 0.06 Total: 5.56 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: -0.16 Total: -59.05 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: 0.18 Total: -16.01 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Atomic # 16 Polarization: 0.06 SS G_CDS: -2.47 Total: -2.41 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.43 -8.21 -44.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753644507.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.000 kcal (2) G-P(sol) polarization free energy of solvation -36.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds