Wall clock time and date at job start Tue Mar 31 2020 15:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.77222 * 127.34130 * 2 1 4 4 C 1.72216 * 94.84807 * 179.80666 * 3 2 1 5 5 O 1.21821 * 127.05598 * 180.20332 * 4 3 2 6 6 N 1.34246 * 105.88111 * 0.31871 * 4 3 2 7 7 C 1.46503 * 121.37947 * 179.88390 * 6 4 3 8 8 C 1.50700 * 109.46707 * 269.71978 * 7 6 4 9 9 O 1.21277 * 120.00478 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99623 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00109 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47391 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.47112 * 305.00167 * 12 11 10 14 14 C 1.53001 * 109.47100 * 64.99897 * 12 11 10 15 15 C 1.53003 * 109.47014 * 184.99488 * 12 11 10 16 16 N 1.46499 * 109.46708 * 174.99880 * 15 12 11 17 17 C 1.36935 * 119.99926 * 180.02562 * 16 15 12 18 18 H 1.08005 * 119.99877 * 359.97438 * 17 16 15 19 19 C 1.38811 * 120.00369 * 179.73019 * 17 16 15 20 20 N 1.31617 * 119.99773 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47045 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47426 * 119.99572 * 21 19 17 24 24 H 1.48501 * 109.46833 * 239.99815 * 21 19 17 25 25 C 1.32564 * 127.33857 * 179.97438 * 2 1 3 26 26 C 1.50709 * 121.64639 * 0.03323 * 25 2 1 27 27 H 1.08994 * 109.47942 * 270.00423 * 1 2 3 28 28 H 1.09008 * 109.46665 * 30.01069 * 1 2 3 29 29 H 1.09007 * 109.47198 * 150.00117 * 1 2 3 30 30 H 1.08996 * 109.47079 * 149.71852 * 7 6 4 31 31 H 1.09005 * 109.46790 * 29.71538 * 7 6 4 32 32 H 0.97005 * 120.00431 * 359.97438 * 10 8 7 33 33 H 1.09001 * 109.47266 * 59.99449 * 11 10 8 34 34 H 1.08997 * 109.46950 * 299.99791 * 11 10 8 35 35 H 1.08999 * 109.47109 * 59.99648 * 14 12 11 36 36 H 1.08996 * 109.47478 * 180.02562 * 14 12 11 37 37 H 1.09005 * 109.47003 * 300.00163 * 14 12 11 38 38 H 1.08998 * 109.46692 * 55.00382 * 15 12 11 39 39 H 1.08994 * 109.47584 * 295.00246 * 15 12 11 40 40 H 0.97005 * 120.00261 * 0.02562 * 16 15 12 41 41 H 0.97004 * 120.00382 * 180.02562 * 20 19 17 42 42 H 1.08998 * 109.46522 * 269.97274 * 26 25 2 43 43 H 1.08997 * 109.47077 * 29.97156 * 26 25 2 44 44 H 1.08998 * 109.47198 * 149.97116 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5820 1.4090 0.0000 4 6 4.0345 0.4838 0.0058 5 8 5.1759 0.9095 0.0114 6 7 3.6507 -0.8026 0.0002 7 6 4.6312 -1.8912 0.0004 8 6 4.9675 -2.2644 -1.4204 9 8 4.4398 -1.6792 -2.3423 10 7 5.8547 -3.2486 -1.6666 11 6 6.1820 -3.6112 -3.0477 12 6 7.2069 -4.7472 -3.0476 13 1 8.0752 -4.4532 -2.4580 14 6 6.5776 -6.0017 -2.4382 15 6 7.6420 -5.0417 -4.4846 16 7 8.7091 -6.0454 -4.4757 17 6 9.2605 -6.4689 -5.6554 18 1 8.9084 -6.0633 -6.5924 19 6 10.2755 -7.4158 -5.6467 20 7 10.7083 -7.9061 -4.5045 21 14 11.0283 -7.9931 -7.2559 22 1 10.3709 -7.2935 -8.3889 23 1 12.4813 -7.6870 -7.2607 24 1 10.8305 -9.4580 -7.3974 25 6 2.3110 -1.0540 0.0005 26 6 1.7706 -2.4608 0.0004 27 1 -0.3635 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5140 29 1 -0.3634 -0.8900 -0.5138 30 1 4.2131 -2.7567 0.5142 31 1 5.5357 -1.5654 0.5142 32 1 6.2771 -3.7165 -0.9293 33 1 6.6000 -2.7454 -3.5614 34 1 5.2779 -3.9371 -3.5618 35 1 5.7093 -6.2957 -3.0277 36 1 7.3078 -6.8109 -2.4377 37 1 6.2676 -5.7919 -1.4144 38 1 8.0085 -4.1258 -4.9481 39 1 6.7916 -5.4205 -5.0514 40 1 9.0251 -6.4099 -3.6341 41 1 11.4178 -8.5675 -4.4983 42 1 1.6403 -2.8000 1.0280 43 1 0.8095 -2.4808 -0.5135 44 1 2.4710 -3.1191 -0.5135 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753644507.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:39 Heat of formation + Delta-G solvation = -62.750015 kcal Electronic energy + Delta-G solvation = -25150.792017 eV Core-core repulsion = 21422.140198 eV Total energy + Delta-G solvation = -3728.651819 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.34683 -40.50587 -38.83957 -38.23979 -36.02925 -34.62639 -34.16566 -32.11653 -31.10757 -30.19649 -27.79707 -27.17036 -25.89445 -24.87407 -23.98404 -21.87286 -21.34835 -20.81251 -19.32996 -19.25677 -18.57240 -18.18483 -17.19235 -16.92008 -16.70615 -16.47113 -16.15672 -15.73188 -15.48597 -15.14371 -14.93621 -14.87602 -14.64102 -14.47920 -14.24999 -13.78816 -13.64571 -13.58413 -13.46935 -13.32302 -12.97454 -12.85595 -12.81964 -12.45404 -12.21578 -12.14351 -12.01789 -11.87323 -11.73938 -11.68346 -11.29333 -11.25038 -10.97391 -10.41585 -10.22226 -9.01380 -8.90568 -7.97576 -5.25734 -0.17439 0.34225 0.75025 1.01349 1.39856 1.46558 1.47000 1.57114 1.60886 2.13083 2.54928 3.36269 3.45897 3.61782 3.69264 3.76089 3.94090 4.05112 4.06551 4.10677 4.25838 4.32832 4.51759 4.57812 4.66661 4.68411 4.72174 4.77082 4.89042 4.92652 5.04134 5.04700 5.10041 5.10642 5.25091 5.37026 5.40902 5.47740 5.48816 5.64740 6.14660 6.25469 6.39944 7.05918 7.32385 8.07124 8.31641 9.25928 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.030537 B = 0.001978 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.714077 B =14150.315226 C =14419.086242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.202 4.202 3 S -0.011 6.011 4 C 0.467 3.533 5 O -0.521 6.521 6 N -0.514 5.514 7 C 0.081 3.919 8 C 0.495 3.505 9 O -0.575 6.575 10 N -0.705 5.705 11 C 0.140 3.860 12 C -0.094 4.094 13 H 0.077 0.923 14 C -0.134 4.134 15 C 0.156 3.844 16 N -0.741 5.741 17 C -0.246 4.246 18 H 0.072 0.928 19 C -0.074 4.074 20 N -0.967 5.967 21 Si 0.972 3.028 22 H -0.269 1.269 23 H -0.293 1.293 24 H -0.291 1.291 25 C 0.089 3.911 26 C -0.097 4.097 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.172 0.828 31 H 0.132 0.868 32 H 0.419 0.581 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.041 0.959 37 H 0.082 0.918 38 H 0.014 0.986 39 H 0.023 0.977 40 H 0.377 0.623 41 H 0.252 0.748 42 H 0.115 0.885 43 H 0.107 0.893 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.080 11.682 17.166 32.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.321 4.321 3 S 0.233 5.767 4 C 0.151 3.849 5 O -0.405 6.405 6 N -0.233 5.233 7 C -0.048 4.048 8 C 0.281 3.719 9 O -0.455 6.455 10 N -0.358 5.358 11 C 0.016 3.984 12 C -0.113 4.113 13 H 0.095 0.905 14 C -0.191 4.191 15 C 0.028 3.972 16 N -0.384 5.384 17 C -0.378 4.378 18 H 0.090 0.910 19 C -0.267 4.267 20 N -0.617 5.617 21 Si 0.802 3.198 22 H -0.193 1.193 23 H -0.220 1.220 24 H -0.218 1.218 25 C -0.019 4.019 26 C -0.156 4.156 27 H 0.113 0.887 28 H 0.093 0.907 29 H 0.118 0.882 30 H 0.190 0.810 31 H 0.150 0.850 32 H 0.257 0.743 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.101 0.899 38 H 0.032 0.968 39 H 0.041 0.959 40 H 0.210 0.790 41 H 0.061 0.939 42 H 0.133 0.867 43 H 0.125 0.875 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -24.921 13.694 16.314 32.783 hybrid contribution 1.891 -1.775 -0.644 2.672 sum -23.030 11.919 15.670 30.298 Atomic orbital electron populations 1.20302 0.82972 1.04406 1.04316 1.24021 1.00984 0.90189 1.16871 1.85059 0.97963 1.12926 1.80772 1.21863 0.94657 0.85849 0.82550 1.90928 1.21023 1.72959 1.55582 1.45637 1.07020 1.06437 1.64217 1.21952 0.95691 0.92835 0.94284 1.21244 0.79139 0.79489 0.92059 1.90748 1.53714 1.53590 1.47412 1.45786 1.43684 1.36838 1.09498 1.21121 0.98116 0.96423 0.82771 1.21333 0.97838 0.95518 0.96642 0.90462 1.21726 1.00220 0.96128 1.01073 1.20728 0.90330 0.91094 0.95003 1.42501 1.42295 1.47963 1.05659 1.19645 1.13364 1.17281 0.87507 0.90971 1.25541 1.00439 1.00629 1.00068 1.69801 1.32202 1.34048 1.25685 0.85088 0.77697 0.77544 0.79519 1.19326 1.22048 1.21783 1.19826 0.80755 1.00100 1.01247 1.20939 1.02682 0.86405 1.05591 0.88711 0.90749 0.88227 0.81039 0.84978 0.74298 0.93069 0.91238 0.92732 0.93983 0.89938 0.96785 0.95899 0.78998 0.93925 0.86686 0.87461 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.37 10.10 71.24 0.72 0.35 16 2 C -0.20 -2.84 6.72 24.53 0.16 -2.67 16 3 S -0.01 -0.23 22.97 -56.49 -1.30 -1.53 16 4 C 0.47 12.50 8.27 129.87 1.07 13.57 16 5 O -0.52 -17.74 17.55 -4.74 -0.08 -17.82 16 6 N -0.51 -10.07 2.09 -647.48 -1.35 -11.42 16 7 C 0.08 1.17 5.47 85.63 0.47 1.64 16 8 C 0.50 10.90 7.63 87.66 0.67 11.57 16 9 O -0.58 -18.53 16.43 -3.02 -0.05 -18.58 16 10 N -0.70 -13.31 5.28 -463.07 -2.45 -15.76 16 11 C 0.14 3.53 5.06 86.38 0.44 3.97 16 12 C -0.09 -2.67 2.46 -10.79 -0.03 -2.70 16 13 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 14 C -0.13 -3.40 8.94 71.98 0.64 -2.76 16 15 C 0.16 6.07 5.65 86.38 0.49 6.55 16 16 N -0.74 -36.96 5.33 -343.46 -1.83 -38.79 16 17 C -0.25 -13.76 9.99 84.03 0.84 -12.93 16 18 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 19 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 20 N -0.97 -58.39 13.06 21.65 0.28 -58.11 16 21 Si 0.97 46.15 29.55 68.60 2.03 48.18 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 24 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 25 C 0.09 1.27 6.59 40.71 0.27 1.54 16 26 C -0.10 -0.57 9.07 71.24 0.65 0.08 16 27 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 28 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 29 H 0.10 0.25 6.77 -2.38 -0.02 0.23 16 30 H 0.17 0.74 6.83 -2.39 -0.02 0.73 16 31 H 0.13 1.80 7.80 -2.38 -0.02 1.78 16 32 H 0.42 5.12 7.66 -92.70 -0.71 4.41 16 33 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.04 1.33 7.18 -2.39 -0.02 1.32 16 37 H 0.08 1.41 7.18 -2.38 -0.02 1.40 16 38 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.38 19.61 6.85 -92.70 -0.63 18.98 16 41 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 42 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 43 H 0.11 0.34 6.69 -2.39 -0.02 0.32 16 44 H 0.07 0.51 6.70 -2.39 -0.02 0.49 16 Total: -1.00 -82.30 378.11 1.80 -80.50 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -0.31 Total: 18.89 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: 6.86 Total: 14.43 kcal Atomic # 7 Polarization: -118.73 SS G_CDS: -5.35 Total: -124.07 kcal Atomic # 8 Polarization: -36.27 SS G_CDS: -0.13 Total: -36.40 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Atomic # 16 Polarization: -0.23 SS G_CDS: -1.30 Total: -1.53 kcal Total: -82.30 1.80 -80.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753644507.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.752 kcal (2) G-P(sol) polarization free energy of solvation -82.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds