Wall clock time and date at job start Tue Mar 31 2020 15:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30263 * 125.62040 * 2 1 4 4 C 1.34475 * 108.70339 * 180.18785 * 3 2 1 5 5 C 1.50696 * 126.16765 * 179.82858 * 4 3 2 6 6 N 1.46904 * 109.46800 * 274.68870 * 5 4 3 7 7 C 1.46899 * 111.00029 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47254 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.47196 * 64.99805 * 8 7 6 10 10 C 1.52997 * 109.47504 * 184.99955 * 8 7 6 11 11 N 1.46503 * 109.47269 * 304.99927 * 8 7 6 12 12 C 1.46500 * 119.99754 * 300.00300 * 11 8 7 13 13 C 1.34780 * 119.99889 * 119.99501 * 11 8 7 14 14 O 1.21276 * 120.00389 * 0.02562 * 13 11 8 15 15 C 1.50700 * 119.99528 * 179.97438 * 13 11 8 16 16 S 1.81007 * 109.47061 * 180.02562 * 15 13 11 17 17 C 1.76197 * 99.99962 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00541 * 0.02562 * 17 16 15 19 19 C 1.38804 * 119.99796 * 180.02562 * 17 16 15 20 20 N 1.31631 * 119.99711 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00149 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46830 * 89.99982 * 21 19 17 23 23 H 1.48501 * 109.47222 * 210.00070 * 21 19 17 24 24 H 1.48502 * 109.46721 * 330.00363 * 21 19 17 25 25 C 1.34336 * 107.66893 * 359.55942 * 4 3 2 26 26 O 1.33970 * 125.62355 * 179.70124 * 2 1 3 27 27 H 1.08999 * 109.47028 * 180.31392 * 1 2 3 28 28 H 1.08994 * 109.47295 * 300.32107 * 1 2 3 29 29 H 1.09004 * 109.47103 * 60.32041 * 1 2 3 30 30 H 1.08995 * 109.47455 * 154.68808 * 5 4 3 31 31 H 1.09003 * 109.47449 * 34.68041 * 5 4 3 32 32 H 1.00902 * 111.00190 * 56.03702 * 6 5 4 33 33 H 1.09002 * 109.47043 * 299.99792 * 7 6 5 34 34 H 1.09001 * 109.47354 * 59.99854 * 7 6 5 35 35 H 1.09004 * 109.46881 * 300.00361 * 10 8 7 36 36 H 1.09002 * 109.47016 * 59.99741 * 10 8 7 37 37 H 1.09000 * 109.47400 * 180.02562 * 10 8 7 38 38 H 1.08992 * 109.47332 * 90.00087 * 12 11 8 39 39 H 1.09008 * 109.46640 * 209.99942 * 12 11 8 40 40 H 1.08994 * 109.47047 * 329.98940 * 12 11 8 41 41 H 1.09000 * 109.47800 * 300.00464 * 15 13 11 42 42 H 1.09006 * 109.47185 * 60.01006 * 15 13 11 43 43 H 0.97006 * 119.99830 * 180.02562 * 20 19 17 44 44 H 1.07998 * 126.44371 * 180.28557 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 -0.0042 5 6 4.7570 1.5727 -0.0093 6 7 5.0756 1.9560 -1.3912 7 6 6.2479 2.8401 -1.4354 8 6 6.5485 3.2164 -2.8876 9 1 5.7254 3.8087 -3.2873 10 6 7.8404 4.0339 -2.9458 11 7 6.7055 1.9977 -3.6854 12 6 7.7521 1.0302 -3.3466 13 6 5.8870 1.7667 -4.7310 14 8 5.0208 2.5678 -5.0117 15 6 6.0489 0.5134 -5.5520 16 16 4.8117 0.4934 -6.8731 17 6 5.2192 -1.0342 -7.6508 18 1 6.0310 -1.6351 -7.2687 19 6 4.4967 -1.4653 -8.7548 20 7 3.5075 -0.7326 -9.2210 21 14 4.9281 -3.0851 -9.5790 22 1 4.1489 -4.1826 -8.9516 23 1 4.5988 -3.0080 -11.0250 24 1 6.3797 -3.3525 -9.4154 25 6 3.5698 -0.6756 0.0031 26 8 2.2873 -1.0890 0.0057 27 1 -0.3633 -1.0276 0.0056 28 1 -0.3633 0.5188 0.8870 29 1 -0.3633 0.5089 -0.8929 30 1 5.6071 1.0487 0.4275 31 1 4.5420 2.4672 0.5754 32 1 4.2806 2.3863 -1.8396 33 1 6.0437 3.7433 -0.8605 34 1 7.1082 2.3244 -1.0086 35 1 7.7236 4.9406 -2.3521 36 1 8.6635 3.4415 -2.5461 37 1 8.0543 4.3024 -3.9803 38 1 7.3566 0.2992 -2.6415 39 1 8.0822 0.5203 -4.2517 40 1 8.5961 1.5513 -2.8949 41 1 7.0472 0.4917 -5.9892 42 1 5.9129 -0.3595 -4.9133 43 1 3.0023 -1.0340 -9.9923 44 1 4.4470 -1.3057 0.0065 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753679555.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:01 Heat of formation + Delta-G solvation = -9.677928 kcal Electronic energy + Delta-G solvation = -25457.157365 eV Core-core repulsion = 21730.806924 eV Total energy + Delta-G solvation = -3726.350441 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.39569 -39.58768 -37.07333 -35.57063 -34.33214 -32.59725 -32.37801 -31.60827 -28.65008 -28.41752 -26.73966 -26.42772 -25.43235 -23.94463 -21.66114 -21.53091 -21.07236 -18.94667 -17.63655 -17.23008 -16.84983 -16.80202 -16.04548 -15.45498 -15.17270 -15.02374 -14.76235 -14.67570 -14.20123 -14.15788 -13.72743 -13.29235 -13.17658 -12.96877 -12.91495 -12.78527 -12.63755 -12.44083 -12.19477 -12.10557 -12.01074 -11.79040 -11.54109 -11.14758 -11.02783 -10.97491 -10.85686 -10.70918 -10.64138 -9.74413 -9.19634 -9.01742 -8.88466 -8.53404 -8.29506 -8.14219 -6.42609 -6.16637 -3.85911 1.37935 2.49325 2.68236 3.05484 3.24019 3.25583 3.29951 3.33766 3.70797 3.81863 4.18643 4.25641 4.58434 4.73057 4.77360 5.01476 5.06607 5.14871 5.18282 5.18540 5.22362 5.24060 5.29209 5.32799 5.37792 5.45508 5.54324 5.57611 5.60092 5.68732 5.76223 5.82732 5.88159 5.98419 6.04482 6.11477 6.17668 6.24772 6.76430 6.90473 7.24154 7.64190 7.65359 7.73558 8.40200 8.74751 9.28585 10.90819 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.008761 B = 0.003644 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3195.160143 B = 7682.454104 C = 9933.603821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.190 3.810 3 N -0.481 5.481 4 C -0.013 4.013 5 C 0.145 3.855 6 N -0.678 5.678 7 C 0.052 3.948 8 C 0.138 3.862 9 H 0.100 0.900 10 C -0.159 4.159 11 N -0.603 5.603 12 C 0.084 3.916 13 C 0.540 3.460 14 O -0.523 6.523 15 C -0.147 4.147 16 S -0.063 6.063 17 C -0.533 4.533 18 H 0.071 0.929 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.917 3.083 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.055 4.055 26 O -0.203 6.203 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.352 0.648 33 H 0.038 0.962 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.267 0.733 44 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.715 3.471 22.583 23.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.017 4.017 3 N -0.212 5.212 4 C -0.132 4.132 5 C 0.016 3.984 6 N -0.310 5.310 7 C -0.078 4.078 8 C 0.033 3.967 9 H 0.118 0.882 10 C -0.218 4.218 11 N -0.338 5.338 12 C -0.059 4.059 13 C 0.328 3.672 14 O -0.398 6.398 15 C -0.297 4.297 16 S 0.164 5.836 17 C -0.682 4.682 18 H 0.089 0.911 19 C -0.136 4.136 20 N -0.504 5.504 21 Si 0.743 3.257 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.127 4.127 26 O -0.089 6.089 27 H 0.106 0.894 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.104 0.896 31 H 0.063 0.937 32 H 0.171 0.829 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.077 0.923 44 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 3.406 4.682 21.911 22.663 hybrid contribution 1.386 -1.999 0.147 2.438 sum 4.792 2.682 22.058 22.731 Atomic orbital electron populations 1.20248 0.81396 1.04727 1.05047 1.26277 0.96534 0.78634 1.00230 1.70287 1.01702 1.30459 1.18734 1.21526 0.92755 0.92848 1.06113 1.20066 0.91726 0.96034 0.90592 1.60378 1.08775 1.46689 1.15185 1.22340 0.94026 0.94853 0.96578 1.20978 0.99082 0.86626 0.90006 0.88232 1.22095 0.97161 0.99661 1.02843 1.47576 1.34228 1.21547 1.30443 1.21655 0.90303 0.92512 1.01442 1.20191 0.80255 0.87266 0.79501 1.90664 1.33207 1.47293 1.68669 1.23522 1.06134 0.97577 1.02495 1.85371 1.39960 1.29282 1.29009 1.22869 1.21089 1.06988 1.17214 0.91055 1.24978 0.94579 0.97925 0.96073 1.70027 1.19267 1.37274 1.23797 0.86195 0.78786 0.82255 0.78426 1.20315 1.20777 1.19708 1.24738 0.84815 0.96111 1.06989 1.84455 1.17029 1.37778 1.69679 0.89395 0.88716 0.88297 0.89634 0.93734 0.82870 0.94362 0.90762 0.91680 0.92266 0.91733 0.92619 0.91160 0.91825 0.89608 0.89411 0.92271 0.76921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.44 10.51 36.00 0.38 -0.06 16 2 C 0.19 2.34 8.34 -12.95 -0.11 2.24 16 3 N -0.48 -6.73 11.29 -7.36 -0.08 -6.82 16 4 C -0.01 -0.16 6.62 -82.81 -0.55 -0.71 16 5 C 0.15 1.51 6.23 -4.98 -0.03 1.48 16 6 N -0.68 -8.22 6.21 -115.06 -0.71 -8.93 16 7 C 0.05 0.52 4.98 -3.83 -0.02 0.50 16 8 C 0.14 1.66 2.88 -67.93 -0.20 1.46 16 9 H 0.10 1.47 6.90 -51.93 -0.36 1.11 16 10 C -0.16 -1.48 9.17 37.16 0.34 -1.14 16 11 N -0.60 -8.61 2.49 -173.94 -0.43 -9.05 16 12 C 0.08 0.93 9.40 59.85 0.56 1.49 16 13 C 0.54 10.58 7.69 -10.98 -0.08 10.50 16 14 O -0.52 -12.22 15.19 5.56 0.08 -12.14 16 15 C -0.15 -3.11 4.71 36.01 0.17 -2.94 16 16 S -0.06 -1.76 20.57 -107.50 -2.21 -3.97 16 17 C -0.53 -15.51 9.50 30.94 0.29 -15.21 16 18 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 19 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 20 N -0.87 -26.61 13.22 55.49 0.73 -25.87 16 21 Si 0.92 21.72 29.55 -169.99 -5.02 16.69 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 C -0.06 -0.64 12.08 29.36 0.35 -0.28 16 26 O -0.20 -2.59 10.78 5.35 0.06 -2.53 16 27 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.35 5.16 8.72 -39.29 -0.34 4.82 16 33 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.63 7.84 -51.93 -0.41 0.22 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.47 6.66 -51.93 -0.35 0.12 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.80 6.44 -51.92 -0.33 0.47 16 40 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 41 H 0.09 1.69 7.40 -51.92 -0.38 1.30 16 42 H 0.09 1.78 8.11 -51.91 -0.42 1.36 16 43 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.21 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 384.19 15.07 5.79 5.79 Total: -1.00 -37.00 384.19 -7.48 -44.48 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -6.70 Total: 2.99 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 1.02 Total: -0.65 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -0.50 Total: -50.67 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: 0.14 Total: -14.66 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -1.76 SS G_CDS: -2.21 Total: -3.97 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.00 -7.48 -44.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753679555.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.800 kcal (2) G-P(sol) polarization free energy of solvation -36.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds