Wall clock time and date at job start Tue Mar 31 2020 15:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34332 * 126.44280 * 2 1 4 4 N 1.34471 * 107.66856 * 180.02562 * 3 2 1 5 5 C 1.30253 * 108.70602 * 0.02562 * 4 3 2 6 6 C 1.50696 * 125.62276 * 180.26292 * 5 4 3 7 7 N 1.46908 * 109.47312 * 89.69230 * 6 5 4 8 8 C 1.46898 * 110.99933 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.46772 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.47323 * 295.00298 * 9 8 7 11 11 C 1.52999 * 109.47052 * 175.00051 * 9 8 7 12 12 N 1.46502 * 109.47060 * 55.00258 * 9 8 7 13 13 C 1.46499 * 119.99983 * 59.99551 * 12 9 8 14 14 C 1.34777 * 120.00016 * 239.99984 * 12 9 8 15 15 O 1.21278 * 119.99976 * 359.97438 * 14 12 9 16 16 C 1.50703 * 120.00130 * 179.97438 * 14 12 9 17 17 S 1.80995 * 109.47017 * 179.97438 * 16 14 12 18 18 C 1.76204 * 99.99775 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00148 * 0.02562 * 18 17 16 20 20 C 1.38800 * 120.00086 * 179.97438 * 18 17 16 21 21 N 1.31627 * 119.99893 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99886 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47280 * 89.99844 * 22 20 18 24 24 H 1.48497 * 109.47130 * 210.00042 * 22 20 18 25 25 H 1.48506 * 109.47163 * 329.99855 * 22 20 18 26 26 O 1.33974 * 108.75653 * 359.97438 * 5 4 3 27 27 H 1.09010 * 109.46876 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47152 * 299.99612 * 1 2 3 29 29 H 1.09002 * 109.47002 * 60.00351 * 1 2 3 30 30 H 1.08005 * 126.16232 * 0.02562 * 3 2 1 31 31 H 1.09003 * 109.46949 * 209.69285 * 6 5 4 32 32 H 1.09000 * 109.47067 * 329.69047 * 6 5 4 33 33 H 1.00898 * 110.99186 * 303.95881 * 7 6 5 34 34 H 1.09003 * 109.47128 * 299.99873 * 8 7 6 35 35 H 1.09000 * 109.46676 * 60.00170 * 8 7 6 36 36 H 1.09001 * 109.47258 * 300.00286 * 11 9 8 37 37 H 1.09003 * 109.46964 * 60.00445 * 11 9 8 38 38 H 1.08995 * 109.47249 * 179.97438 * 11 9 8 39 39 H 1.08998 * 109.47251 * 90.00161 * 13 12 9 40 40 H 1.08996 * 109.47367 * 209.99785 * 13 12 9 41 41 H 1.08998 * 109.47127 * 330.00351 * 13 12 9 42 42 H 1.08999 * 109.47184 * 300.00139 * 16 14 12 43 43 H 1.09008 * 109.46786 * 59.99815 * 16 14 12 44 44 H 0.97005 * 119.99793 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5781 0.6479 -0.0006 5 6 3.5766 -0.6547 -0.0015 6 6 4.8005 -1.5339 0.0033 7 7 5.1965 -1.8145 1.3899 8 6 6.3887 -2.6716 1.4336 9 6 6.7701 -2.9406 2.8907 10 1 7.0688 -2.0066 3.3666 11 6 7.9342 -3.9323 2.9384 12 7 5.6192 -3.5042 3.6006 13 6 5.0273 -4.7665 3.1507 14 6 5.1047 -2.8613 4.6677 15 8 5.5949 -1.8165 5.0404 16 6 3.9204 -3.4407 5.3976 17 16 3.4690 -2.3542 6.7730 18 6 2.0988 -3.2461 7.4303 19 1 1.7878 -4.1732 6.9718 20 6 1.4198 -2.7577 8.5380 21 7 0.3966 -3.4242 9.0293 22 14 1.9581 -1.1546 9.3315 23 1 1.2352 -0.0220 8.6992 24 1 1.6470 -1.1918 10.7831 25 1 3.4203 -0.9755 9.1432 26 8 2.3075 -1.0840 -0.0009 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.9821 2.1113 0.0004 31 1 4.5769 -2.4706 -0.5074 32 1 5.6154 -1.0249 -0.5114 33 1 5.3467 -0.9589 1.9031 34 1 6.1758 -3.6161 0.9330 35 1 7.2148 -2.1708 0.9287 36 1 7.6356 -4.8664 2.4625 37 1 8.7906 -3.5130 2.4102 38 1 8.2062 -4.1237 3.9764 39 1 5.5162 -5.5982 3.6580 40 1 3.9630 -4.7729 3.3855 41 1 5.1626 -4.8678 2.0739 42 1 3.0780 -3.5281 4.7115 43 1 4.1785 -4.4269 5.7836 44 1 -0.0777 -3.0831 9.8037 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753680130.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:44 Heat of formation + Delta-G solvation = -8.206714 kcal Electronic energy + Delta-G solvation = -25575.406485 eV Core-core repulsion = 21849.119841 eV Total energy + Delta-G solvation = -3726.286644 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.42145 -39.73350 -37.16975 -35.33621 -34.73433 -32.85099 -32.39760 -31.93257 -28.89280 -28.59083 -26.74958 -25.86216 -25.56442 -24.04790 -22.29944 -21.64092 -21.08536 -19.10652 -17.66268 -17.36929 -16.94952 -16.86727 -15.97757 -15.61002 -15.25504 -15.01193 -14.87025 -14.68531 -14.45043 -14.04825 -13.66879 -13.32085 -13.28821 -13.20246 -13.09071 -12.74595 -12.66674 -12.62384 -12.41278 -12.31350 -12.03591 -11.99360 -11.66852 -11.40803 -11.21328 -11.00322 -10.97547 -10.67210 -10.51970 -9.81598 -9.34623 -8.96266 -8.92054 -8.70037 -8.44548 -8.41335 -6.85435 -6.25114 -3.95477 1.27833 2.45261 2.55308 2.80035 3.08739 3.26860 3.36242 3.53977 3.65134 3.74341 4.07642 4.36967 4.51309 4.61784 4.76759 4.81779 4.85111 4.91854 5.02351 5.08583 5.14172 5.16760 5.18778 5.23827 5.25308 5.28671 5.39428 5.41516 5.47767 5.55882 5.73224 5.78140 5.87798 5.93202 5.94126 5.99933 6.11833 6.15859 6.54433 6.72895 7.01612 7.59579 7.59910 7.98168 8.45685 8.58836 9.21596 10.84239 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.008788 B = 0.003938 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3185.234861 B = 7108.819909 C = 9351.734668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.040 4.040 3 C -0.047 4.047 4 N -0.478 5.478 5 C 0.191 3.809 6 C 0.159 3.841 7 N -0.679 5.679 8 C 0.051 3.949 9 C 0.138 3.862 10 H 0.101 0.899 11 C -0.158 4.158 12 N -0.602 5.602 13 C 0.085 3.915 14 C 0.538 3.462 15 O -0.525 6.525 16 C -0.118 4.118 17 S -0.145 6.145 18 C -0.519 4.519 19 H 0.087 0.913 20 C 0.096 3.904 21 N -0.882 5.882 22 Si 0.856 3.144 23 H -0.268 1.268 24 H -0.275 1.275 25 H -0.235 1.235 26 O -0.192 6.192 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.183 0.817 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.355 0.645 34 H 0.079 0.921 35 H 0.044 0.956 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.610 0.621 -22.710 24.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.094 4.094 3 C -0.185 4.185 4 N -0.207 5.207 5 C -0.016 4.016 6 C 0.030 3.970 7 N -0.313 5.313 8 C -0.079 4.079 9 C 0.033 3.967 10 H 0.119 0.881 11 C -0.216 4.216 12 N -0.337 5.337 13 C -0.058 4.058 14 C 0.326 3.674 15 O -0.400 6.400 16 C -0.268 4.268 17 S 0.081 5.919 18 C -0.666 4.666 19 H 0.105 0.895 20 C -0.113 4.113 21 N -0.519 5.519 22 Si 0.681 3.319 23 H -0.193 1.193 24 H -0.200 1.200 25 H -0.159 1.159 26 O -0.078 6.078 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.200 0.800 31 H 0.117 0.883 32 H 0.091 0.909 33 H 0.175 0.825 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.114 0.886 43 H 0.112 0.888 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.287 1.924 -21.956 23.917 hybrid contribution -0.712 -0.392 -0.226 0.843 sum 8.575 1.533 -22.182 23.832 Atomic orbital electron populations 1.20312 0.83902 1.04585 1.03934 1.23540 0.95195 0.84551 1.06115 1.23020 0.87698 1.00426 1.07405 1.70389 1.23428 1.09222 1.17693 1.25927 0.84417 0.89945 1.01348 1.20141 0.88192 0.96736 0.91959 1.60318 1.37161 1.22831 1.10998 1.22376 0.90606 0.97647 0.97227 1.20998 0.85956 0.98667 0.91049 0.88099 1.22079 0.97349 0.99269 1.02951 1.47564 1.31944 1.23961 1.30206 1.21660 0.99170 0.85070 0.99908 1.20180 0.83839 0.84018 0.79320 1.90662 1.61003 1.22633 1.65745 1.23281 0.98279 1.03857 1.01425 1.84759 1.41344 1.33759 1.32000 1.22326 1.14997 1.11557 1.17742 0.89479 1.24699 0.93775 0.97283 0.95500 1.69943 1.19455 1.38848 1.23640 0.86742 0.82208 0.83750 0.79200 1.19282 1.19999 1.15920 1.84408 1.17702 1.36439 1.69204 0.90214 0.88953 0.89422 0.80014 0.88292 0.90913 0.82520 0.90269 0.93745 0.92181 0.91612 0.91686 0.93108 0.90810 0.91447 0.88640 0.88808 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.43 36.01 0.38 -0.17 16 2 C -0.04 -0.47 7.39 -35.69 -0.26 -0.74 16 3 C -0.05 -0.57 11.80 -17.77 -0.21 -0.78 16 4 N -0.48 -6.65 11.29 -11.10 -0.13 -6.78 16 5 C 0.19 2.44 7.86 -12.95 -0.10 2.34 16 6 C 0.16 1.51 6.31 -4.97 -0.03 1.48 16 7 N -0.68 -7.50 6.21 -115.05 -0.71 -8.21 16 8 C 0.05 0.44 4.93 -3.82 -0.02 0.42 16 9 C 0.14 1.50 2.88 -67.93 -0.20 1.30 16 10 H 0.10 1.34 6.90 -51.93 -0.36 0.99 16 11 C -0.16 -1.32 9.19 37.16 0.34 -0.98 16 12 N -0.60 -8.06 2.48 -173.93 -0.43 -8.49 16 13 C 0.09 0.90 9.30 59.85 0.56 1.45 16 14 C 0.54 9.96 7.69 -10.98 -0.08 9.88 16 15 O -0.53 -11.50 15.19 5.56 0.08 -11.42 16 16 C -0.12 -2.40 4.71 36.01 0.17 -2.23 16 17 S -0.15 -3.78 18.55 -107.50 -1.99 -5.78 16 18 C -0.52 -15.22 10.04 30.94 0.31 -14.91 16 19 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 20 C 0.10 2.84 5.50 -17.43 -0.10 2.75 16 21 N -0.88 -26.92 13.97 55.49 0.78 -26.14 16 22 Si 0.86 22.19 27.74 -169.99 -4.72 17.47 16 23 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.24 -6.10 6.74 56.52 0.38 -5.72 16 26 O -0.19 -2.59 10.78 5.35 0.06 -2.53 16 27 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 28 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.18 1.68 8.06 -52.48 -0.42 1.26 16 31 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.36 4.65 8.72 -39.29 -0.34 4.30 16 34 H 0.08 0.57 6.88 -51.93 -0.36 0.21 16 35 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.43 7.67 -51.93 -0.40 0.03 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.85 6.44 -51.93 -0.33 0.51 16 41 H 0.07 0.56 6.53 -51.93 -0.34 0.22 16 42 H 0.10 1.87 7.40 -51.92 -0.38 1.49 16 43 H 0.09 1.79 8.11 -51.91 -0.42 1.37 16 44 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 381.53 15.07 5.75 5.75 Total: -1.00 -36.56 381.53 -7.30 -43.86 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -6.74 Total: 2.45 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 0.75 Total: -0.18 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: -0.50 Total: -49.63 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.14 Total: -13.95 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.72 Total: 17.47 kcal Atomic # 16 Polarization: -3.78 SS G_CDS: -1.99 Total: -5.78 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.56 -7.30 -43.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753680130.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.658 kcal (2) G-P(sol) polarization free energy of solvation -36.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds