Wall clock time and date at job start Tue Mar 31 2020 15:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34332 * 126.44280 * 2 1 4 4 N 1.34471 * 107.66856 * 180.02562 * 3 2 1 5 5 C 1.30253 * 108.70602 * 0.02562 * 4 3 2 6 6 C 1.50696 * 125.62276 * 180.26292 * 5 4 3 7 7 N 1.46908 * 109.47312 * 89.69230 * 6 5 4 8 8 C 1.46898 * 110.99933 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.46772 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.47323 * 295.00298 * 9 8 7 11 11 C 1.52999 * 109.47052 * 175.00051 * 9 8 7 12 12 N 1.46502 * 109.47060 * 55.00258 * 9 8 7 13 13 C 1.46499 * 119.99983 * 59.99551 * 12 9 8 14 14 C 1.34777 * 120.00016 * 239.99984 * 12 9 8 15 15 O 1.21278 * 119.99976 * 359.97438 * 14 12 9 16 16 C 1.50703 * 120.00130 * 179.97438 * 14 12 9 17 17 S 1.80995 * 109.47017 * 179.97438 * 16 14 12 18 18 C 1.76204 * 99.99775 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00148 * 0.02562 * 18 17 16 20 20 C 1.38800 * 120.00086 * 179.97438 * 18 17 16 21 21 N 1.31627 * 119.99893 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99886 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47280 * 89.99844 * 22 20 18 24 24 H 1.48497 * 109.47130 * 210.00042 * 22 20 18 25 25 H 1.48506 * 109.47163 * 329.99855 * 22 20 18 26 26 O 1.33974 * 108.75653 * 359.97438 * 5 4 3 27 27 H 1.09010 * 109.46876 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47152 * 299.99612 * 1 2 3 29 29 H 1.09002 * 109.47002 * 60.00351 * 1 2 3 30 30 H 1.08005 * 126.16232 * 0.02562 * 3 2 1 31 31 H 1.09003 * 109.46949 * 209.69285 * 6 5 4 32 32 H 1.09000 * 109.47067 * 329.69047 * 6 5 4 33 33 H 1.00898 * 110.99186 * 303.95881 * 7 6 5 34 34 H 1.09003 * 109.47128 * 299.99873 * 8 7 6 35 35 H 1.09000 * 109.46676 * 60.00170 * 8 7 6 36 36 H 1.09001 * 109.47258 * 300.00286 * 11 9 8 37 37 H 1.09003 * 109.46964 * 60.00445 * 11 9 8 38 38 H 1.08995 * 109.47249 * 179.97438 * 11 9 8 39 39 H 1.08998 * 109.47251 * 90.00161 * 13 12 9 40 40 H 1.08996 * 109.47367 * 209.99785 * 13 12 9 41 41 H 1.08998 * 109.47127 * 330.00351 * 13 12 9 42 42 H 1.08999 * 109.47184 * 300.00139 * 16 14 12 43 43 H 1.09008 * 109.46786 * 59.99815 * 16 14 12 44 44 H 0.97005 * 119.99793 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5781 0.6479 -0.0006 5 6 3.5766 -0.6547 -0.0015 6 6 4.8005 -1.5339 0.0033 7 7 5.1965 -1.8145 1.3899 8 6 6.3887 -2.6716 1.4336 9 6 6.7701 -2.9406 2.8907 10 1 7.0688 -2.0066 3.3666 11 6 7.9342 -3.9323 2.9384 12 7 5.6192 -3.5042 3.6006 13 6 5.0273 -4.7665 3.1507 14 6 5.1047 -2.8613 4.6677 15 8 5.5949 -1.8165 5.0404 16 6 3.9204 -3.4407 5.3976 17 16 3.4690 -2.3542 6.7730 18 6 2.0988 -3.2461 7.4303 19 1 1.7878 -4.1732 6.9718 20 6 1.4198 -2.7577 8.5380 21 7 0.3966 -3.4242 9.0293 22 14 1.9581 -1.1546 9.3315 23 1 1.2352 -0.0220 8.6992 24 1 1.6470 -1.1918 10.7831 25 1 3.4203 -0.9755 9.1432 26 8 2.3075 -1.0840 -0.0009 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.9821 2.1113 0.0004 31 1 4.5769 -2.4706 -0.5074 32 1 5.6154 -1.0249 -0.5114 33 1 5.3467 -0.9589 1.9031 34 1 6.1758 -3.6161 0.9330 35 1 7.2148 -2.1708 0.9287 36 1 7.6356 -4.8664 2.4625 37 1 8.7906 -3.5130 2.4102 38 1 8.2062 -4.1237 3.9764 39 1 5.5162 -5.5982 3.6580 40 1 3.9630 -4.7729 3.3855 41 1 5.1626 -4.8678 2.0739 42 1 3.0780 -3.5281 4.7115 43 1 4.1785 -4.4269 5.7836 44 1 -0.0777 -3.0831 9.8037 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753680130.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:43 Heat of formation + Delta-G solvation = -36.795050 kcal Electronic energy + Delta-G solvation = -25576.646168 eV Core-core repulsion = 21849.119841 eV Total energy + Delta-G solvation = -3727.526327 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.33307 -40.97309 -38.18629 -36.35332 -35.68873 -34.68069 -33.74773 -32.84397 -30.25682 -29.41205 -27.86089 -27.71632 -26.61977 -24.82886 -23.18384 -22.68347 -22.00322 -20.35638 -19.58554 -18.37977 -18.12479 -17.83967 -17.19344 -16.98731 -16.80226 -16.23940 -15.89339 -15.74541 -15.57210 -15.26569 -14.94002 -14.66410 -14.42373 -14.21300 -14.05629 -13.86164 -13.58608 -13.40798 -13.35301 -13.31782 -13.19204 -13.03073 -13.01542 -12.81846 -12.59925 -12.53627 -12.36787 -11.88006 -11.76090 -11.61657 -11.18106 -10.82617 -10.52343 -9.75404 -9.60172 -9.43404 -8.99866 -8.52406 -6.22695 0.38551 0.98780 1.29472 1.45656 1.54613 1.57787 1.64602 1.70287 2.17263 2.24565 2.70063 2.85795 2.95330 3.26356 3.64556 3.81004 3.91226 4.03937 4.15043 4.17377 4.18375 4.30764 4.33980 4.38394 4.44507 4.53166 4.63119 4.65028 4.67475 4.72160 4.77278 4.83895 5.00118 5.00958 5.13222 5.16974 5.29413 5.31382 5.66867 5.70245 5.88477 6.10035 6.10222 6.36425 6.68332 6.93005 7.21620 8.60236 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.008788 B = 0.003938 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3185.234861 B = 7108.819909 C = 9351.734668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.049 4.049 3 C -0.067 4.067 4 N -0.506 5.506 5 C 0.179 3.821 6 C 0.164 3.836 7 N -0.698 5.698 8 C 0.058 3.942 9 C 0.133 3.867 10 H 0.071 0.929 11 C -0.150 4.150 12 N -0.586 5.586 13 C 0.077 3.923 14 C 0.536 3.464 15 O -0.569 6.569 16 C -0.102 4.102 17 S -0.178 6.178 18 C -0.528 4.528 19 H 0.060 0.940 20 C 0.048 3.952 21 N -0.916 5.916 22 Si 0.913 3.087 23 H -0.264 1.264 24 H -0.256 1.256 25 H -0.239 1.239 26 O -0.209 6.209 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.114 0.886 30 H 0.203 0.797 31 H 0.122 0.878 32 H 0.090 0.910 33 H 0.339 0.661 34 H 0.104 0.896 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.045 0.955 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.106 0.894 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.746 0.056 -24.666 26.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.102 4.102 3 C -0.205 4.205 4 N -0.236 5.236 5 C -0.028 4.028 6 C 0.035 3.965 7 N -0.330 5.330 8 C -0.071 4.071 9 C 0.029 3.971 10 H 0.089 0.911 11 C -0.208 4.208 12 N -0.318 5.318 13 C -0.065 4.065 14 C 0.323 3.677 15 O -0.448 6.448 16 C -0.253 4.253 17 S 0.048 5.952 18 C -0.675 4.675 19 H 0.079 0.921 20 C -0.157 4.157 21 N -0.554 5.554 22 Si 0.735 3.265 23 H -0.188 1.188 24 H -0.180 1.180 25 H -0.163 1.163 26 O -0.096 6.096 27 H 0.099 0.901 28 H 0.116 0.884 29 H 0.132 0.868 30 H 0.220 0.780 31 H 0.140 0.860 32 H 0.108 0.892 33 H 0.156 0.844 34 H 0.122 0.878 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.431 1.309 -23.960 26.165 hybrid contribution -1.042 -0.317 0.236 1.114 sum 9.389 0.992 -23.724 25.533 Atomic orbital electron populations 1.20496 0.81389 1.05153 1.05491 1.24264 0.96679 0.84081 1.05175 1.23473 0.87455 1.01723 1.07892 1.70373 1.24466 1.10118 1.18686 1.26655 0.85074 0.90205 1.00828 1.20331 0.87318 0.97489 0.91412 1.60362 1.38521 1.22324 1.11793 1.22408 0.90643 0.98539 0.95485 1.21249 0.85755 0.98128 0.91953 0.91081 1.22024 0.96842 0.99510 1.02412 1.47578 1.31838 1.24141 1.28290 1.21933 0.98512 0.83912 1.02171 1.19845 0.83412 0.83828 0.80587 1.90646 1.62255 1.24504 1.67409 1.23245 0.99729 1.02967 0.99383 1.84681 1.39984 1.35569 1.34945 1.22445 1.16184 1.10950 1.17945 0.92143 1.25519 0.93807 1.00351 0.96019 1.70013 1.20475 1.40504 1.24448 0.85892 0.81544 0.79872 0.79211 1.18835 1.18042 1.16265 1.84409 1.18301 1.37341 1.69563 0.90097 0.88356 0.86751 0.78004 0.86033 0.89250 0.84407 0.87761 0.91361 0.90038 0.89365 0.93537 0.91303 0.91949 0.88200 0.88019 0.87533 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 10.43 71.24 0.74 -0.25 16 2 C -0.05 -1.12 7.39 24.79 0.18 -0.94 16 3 C -0.07 -1.63 11.80 83.40 0.98 -0.65 16 4 N -0.51 -14.09 11.29 -303.82 -3.43 -17.52 16 5 C 0.18 4.50 7.86 88.34 0.69 5.19 16 6 C 0.16 2.77 6.31 85.55 0.54 3.31 16 7 N -0.70 -14.23 6.21 -517.91 -3.22 -17.45 16 8 C 0.06 0.80 4.93 86.30 0.43 1.23 16 9 C 0.13 2.61 2.88 44.99 0.13 2.74 16 10 H 0.07 1.87 6.90 -2.39 -0.02 1.86 16 11 C -0.15 -2.03 9.19 71.98 0.66 -1.37 16 12 N -0.59 -14.73 2.48 -822.60 -2.04 -16.77 16 13 C 0.08 1.39 9.30 127.77 1.19 2.58 16 14 C 0.54 19.75 7.69 87.66 0.67 20.43 16 15 O -0.57 -25.39 15.19 -3.02 -0.05 -25.44 16 16 C -0.10 -4.17 4.71 71.24 0.34 -3.84 16 17 S -0.18 -9.44 18.55 -56.49 -1.05 -10.49 16 18 C -0.53 -31.63 10.04 67.95 0.68 -30.94 16 19 H 0.06 3.82 8.03 -2.91 -0.02 3.79 16 20 C 0.05 2.90 5.50 84.86 0.47 3.37 16 21 N -0.92 -56.58 13.97 21.65 0.30 -56.27 16 22 Si 0.91 46.11 27.74 68.60 1.90 48.01 16 23 H -0.26 -13.03 7.11 99.48 0.71 -12.32 16 24 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 25 H -0.24 -12.12 6.74 99.48 0.67 -11.45 16 26 O -0.21 -5.58 10.78 -3.76 -0.04 -5.63 16 27 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.20 3.65 8.06 -2.91 -0.02 3.63 16 31 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.34 8.80 8.72 -89.70 -0.78 8.02 16 34 H 0.10 0.96 6.88 -2.39 -0.02 0.94 16 35 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.08 0.78 7.67 -2.39 -0.02 0.76 16 37 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.06 1.31 6.44 -2.39 -0.02 1.29 16 41 H 0.10 1.20 6.53 -2.39 -0.02 1.18 16 42 H 0.10 4.00 7.40 -2.40 -0.02 3.98 16 43 H 0.11 4.03 8.11 -2.39 -0.02 4.01 16 44 H 0.28 15.78 8.31 -92.70 -0.77 15.01 16 Total: -1.00 -82.22 381.53 0.28 -81.95 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.19 Total: 18.74 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 7.71 Total: 0.86 kcal Atomic # 7 Polarization: -99.62 SS G_CDS: -8.39 Total: -108.01 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -0.09 Total: -31.07 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.90 Total: 48.01 kcal Atomic # 16 Polarization: -9.44 SS G_CDS: -1.05 Total: -10.49 kcal Total: -82.22 0.28 -81.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753680130.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.150 kcal (2) G-P(sol) polarization free energy of solvation -82.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds