Wall clock time and date at job start Tue Mar 31 2020 15:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34329 * 126.44293 * 2 1 4 4 N 1.34483 * 107.66255 * 179.76506 * 3 2 1 5 5 C 1.30257 * 108.70086 * 0.42491 * 4 3 2 6 6 C 1.50704 * 125.61569 * 179.83793 * 5 4 3 7 7 N 1.46898 * 109.47041 * 89.69257 * 6 5 4 8 8 C 1.46906 * 110.99888 * 179.97438 * 7 6 5 9 9 C 1.52993 * 109.47378 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.47318 * 64.99645 * 9 8 7 11 11 C 1.52999 * 109.47457 * 184.99997 * 9 8 7 12 12 N 1.46501 * 109.46854 * 304.99834 * 9 8 7 13 13 C 1.46500 * 120.00408 * 299.99838 * 12 9 8 14 14 C 1.34779 * 119.99966 * 119.99778 * 12 9 8 15 15 O 1.21281 * 120.00104 * 0.02562 * 14 12 9 16 16 C 1.50701 * 120.00259 * 179.97438 * 14 12 9 17 17 S 1.81001 * 109.47541 * 180.02562 * 16 14 12 18 18 C 1.76201 * 100.00021 * 180.02562 * 17 16 14 19 19 H 1.07995 * 119.99785 * 0.02562 * 18 17 16 20 20 C 1.38795 * 119.99485 * 180.02562 * 18 17 16 21 21 N 1.31628 * 120.00290 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99653 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47339 * 59.99700 * 22 20 18 24 24 H 1.48501 * 109.47367 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47002 * 299.99627 * 22 20 18 26 26 O 1.33962 * 108.76292 * 359.57241 * 5 4 3 27 27 H 1.08999 * 109.47727 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47133 * 300.00083 * 1 2 3 29 29 H 1.08994 * 109.47006 * 59.99673 * 1 2 3 30 30 H 1.07997 * 126.17020 * 0.02677 * 3 2 1 31 31 H 1.08997 * 109.46924 * 329.69168 * 6 5 4 32 32 H 1.08995 * 109.46962 * 209.69323 * 6 5 4 33 33 H 1.00901 * 111.00121 * 56.04537 * 7 6 5 34 34 H 1.09004 * 109.47040 * 299.99934 * 8 7 6 35 35 H 1.09000 * 109.47033 * 59.99886 * 8 7 6 36 36 H 1.09001 * 109.47387 * 179.97438 * 11 9 8 37 37 H 1.08993 * 109.46808 * 300.00087 * 11 9 8 38 38 H 1.08999 * 109.47143 * 59.99542 * 11 9 8 39 39 H 1.09006 * 109.47057 * 90.00092 * 13 12 9 40 40 H 1.08995 * 109.47201 * 209.99964 * 13 12 9 41 41 H 1.09002 * 109.46754 * 330.00341 * 13 12 9 42 42 H 1.09000 * 109.47198 * 300.00586 * 16 14 12 43 43 H 1.09003 * 109.47009 * 59.99966 * 16 14 12 44 44 H 0.97008 * 119.99704 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 0.0053 5 6 3.5764 -0.6549 -0.0007 6 6 4.8004 -1.5342 -0.0013 7 7 5.1984 -1.8202 1.3835 8 6 6.3907 -2.6775 1.4222 9 6 6.7736 -2.9534 2.8775 10 1 5.9853 -3.5339 3.3568 11 6 8.0845 -3.7412 2.9195 12 7 6.9444 -1.6829 3.5867 13 6 7.9507 -0.7199 3.1325 14 6 6.1758 -1.4000 4.6571 15 8 5.3430 -2.1973 5.0334 16 6 6.3519 -0.0933 5.3870 17 16 5.1840 -0.0111 6.7674 18 6 5.5971 1.5711 7.4238 19 1 6.3748 2.1610 6.9618 20 6 4.9228 2.0590 8.5345 21 7 3.9753 1.3397 9.0978 22 14 5.3602 3.7367 9.2300 23 1 5.1405 4.7756 8.1918 24 1 4.5020 4.0235 10.4075 25 1 6.7863 3.7444 9.6440 26 8 2.3074 -1.0841 -0.0004 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.9823 2.1112 0.0004 31 1 5.6145 -1.0232 -0.5152 32 1 4.5760 -2.4688 -0.5152 33 1 4.4377 -2.2358 1.9000 34 1 6.1770 -3.6201 0.9182 35 1 7.2161 -2.1749 0.9180 36 1 8.3575 -3.9373 3.9564 37 1 7.9574 -4.6863 2.3919 38 1 8.8728 -3.1607 2.4402 39 1 7.5036 -0.0436 2.4039 40 1 8.3154 -0.1464 3.9846 41 1 8.7817 -1.2533 2.6710 42 1 7.3705 -0.0248 5.7688 43 1 6.1642 0.7336 4.7021 44 1 3.5038 1.6810 9.8739 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753680131.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:48 Heat of formation + Delta-G solvation = -7.131496 kcal Electronic energy + Delta-G solvation = -25464.027494 eV Core-core repulsion = 21737.787475 eV Total energy + Delta-G solvation = -3726.240019 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.39982 -39.60854 -37.07324 -35.23754 -34.73157 -32.80952 -32.36162 -31.86833 -28.80592 -28.47470 -26.67156 -25.81564 -25.41026 -23.93078 -22.38080 -21.52355 -21.03040 -18.98717 -17.62738 -17.17135 -16.92429 -16.82851 -16.13719 -15.43104 -15.23338 -14.91232 -14.74471 -14.68760 -14.28951 -13.87028 -13.78442 -13.33715 -13.24988 -13.12509 -12.90365 -12.73353 -12.58614 -12.54191 -12.37275 -12.13323 -12.06937 -11.81131 -11.57150 -11.33979 -10.98731 -10.98348 -10.90492 -10.70139 -10.56006 -9.73683 -9.20755 -8.99302 -8.86332 -8.65642 -8.31178 -8.13600 -6.41042 -6.14922 -3.84162 1.29378 2.46955 2.60654 3.05538 3.24103 3.28141 3.30996 3.34204 3.70702 3.81680 4.08743 4.27532 4.57260 4.64943 4.80013 4.89300 4.97249 5.05689 5.14547 5.15937 5.18545 5.20027 5.24231 5.26960 5.28919 5.40044 5.42223 5.56122 5.61304 5.70603 5.74178 5.92934 5.93650 5.97105 6.04424 6.09366 6.21127 6.28357 6.60339 6.83367 7.06323 7.65881 7.67282 7.72696 8.41987 8.73892 9.30333 10.92503 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.008835 B = 0.003629 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3168.509783 B = 7713.580259 C = 9966.962989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.046 4.046 3 C -0.043 4.043 4 N -0.459 5.459 5 C 0.186 3.814 6 C 0.163 3.837 7 N -0.676 5.676 8 C 0.053 3.947 9 C 0.138 3.862 10 H 0.100 0.900 11 C -0.159 4.159 12 N -0.603 5.603 13 C 0.083 3.917 14 C 0.541 3.459 15 O -0.525 6.525 16 C -0.147 4.147 17 S -0.064 6.064 18 C -0.533 4.533 19 H 0.071 0.929 20 C 0.074 3.926 21 N -0.869 5.869 22 Si 0.917 3.083 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 O -0.204 6.204 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.183 0.817 31 H 0.112 0.888 32 H 0.057 0.943 33 H 0.351 0.649 34 H 0.042 0.958 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.320 -7.221 -22.481 23.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.099 4.099 3 C -0.181 4.181 4 N -0.188 5.188 5 C -0.021 4.021 6 C 0.033 3.967 7 N -0.309 5.309 8 C -0.077 4.077 9 C 0.033 3.967 10 H 0.118 0.882 11 C -0.218 4.218 12 N -0.338 5.338 13 C -0.060 4.060 14 C 0.329 3.671 15 O -0.401 6.401 16 C -0.298 4.298 17 S 0.163 5.837 18 C -0.681 4.681 19 H 0.089 0.911 20 C -0.135 4.135 21 N -0.505 5.505 22 Si 0.743 3.257 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.200 1.200 26 O -0.091 6.091 27 H 0.095 0.905 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.200 0.800 31 H 0.130 0.870 32 H 0.075 0.925 33 H 0.171 0.829 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.851 -7.514 -21.708 23.046 hybrid contribution 0.263 1.022 -0.266 1.088 sum 2.114 -6.492 -21.974 23.011 Atomic orbital electron populations 1.20289 0.83968 1.04306 1.03978 1.23483 0.95056 0.84552 1.06841 1.23104 0.87806 1.00471 1.06767 1.70416 1.22942 1.09133 1.16326 1.25975 0.83858 0.90480 1.01808 1.20161 0.89174 0.95414 0.91903 1.60291 1.08815 1.50871 1.10908 1.22380 0.93150 0.94891 0.97278 1.20969 0.98749 0.85889 0.91085 0.88161 1.22093 0.96966 0.99750 1.02957 1.47582 1.37965 1.18183 1.30093 1.21685 0.91074 0.92634 1.00651 1.20199 0.79787 0.87943 0.79149 1.90656 1.34162 1.49492 1.65743 1.23526 1.05915 0.96923 1.03419 1.85322 1.45447 1.24775 1.28131 1.22834 1.24467 1.03778 1.17060 0.91066 1.24968 0.94574 0.98222 0.95752 1.70017 1.21986 1.37219 1.21233 0.86254 0.78477 0.82571 0.78378 1.19942 1.20852 1.19958 1.84364 1.17981 1.36817 1.69966 0.90452 0.89020 0.89418 0.79959 0.86984 0.92548 0.82948 0.93997 0.90279 0.91651 0.91641 0.92169 0.92331 0.91119 0.91800 0.89572 0.89265 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.43 36.01 0.38 -0.13 16 2 C -0.05 -0.54 7.39 -35.69 -0.26 -0.80 16 3 C -0.04 -0.55 11.80 -17.77 -0.21 -0.76 16 4 N -0.46 -6.86 11.29 -11.10 -0.13 -6.99 16 5 C 0.19 2.46 7.85 -12.94 -0.10 2.36 16 6 C 0.16 1.62 6.31 -4.97 -0.03 1.59 16 7 N -0.68 -7.85 6.22 -115.06 -0.72 -8.57 16 8 C 0.05 0.48 4.98 -3.82 -0.02 0.46 16 9 C 0.14 1.59 2.88 -67.93 -0.20 1.39 16 10 H 0.10 1.39 6.90 -51.93 -0.36 1.04 16 11 C -0.16 -1.41 9.17 37.16 0.34 -1.07 16 12 N -0.60 -8.63 2.48 -173.93 -0.43 -9.06 16 13 C 0.08 0.95 9.40 59.85 0.56 1.51 16 14 C 0.54 10.63 7.69 -10.98 -0.08 10.55 16 15 O -0.53 -12.15 15.19 5.56 0.08 -12.06 16 16 C -0.15 -3.17 4.71 36.01 0.17 -3.00 16 17 S -0.06 -1.79 20.57 -107.50 -2.21 -4.00 16 18 C -0.53 -15.65 9.50 30.94 0.29 -15.36 16 19 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 20 C 0.07 2.16 5.49 -17.43 -0.10 2.06 16 21 N -0.87 -26.74 13.22 55.49 0.73 -26.01 16 22 Si 0.92 21.90 29.55 -169.99 -5.02 16.88 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 26 O -0.20 -2.70 10.78 5.38 0.06 -2.64 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.18 1.84 8.06 -52.49 -0.42 1.41 16 31 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.35 4.65 8.72 -39.29 -0.34 4.31 16 34 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.63 7.84 -51.93 -0.41 0.22 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.45 6.66 -51.93 -0.35 0.11 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.84 6.44 -51.93 -0.33 0.50 16 41 H 0.06 0.55 6.43 -51.93 -0.33 0.21 16 42 H 0.09 1.72 7.40 -51.92 -0.38 1.33 16 43 H 0.09 1.87 8.11 -51.92 -0.42 1.45 16 44 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 384.19 15.07 5.79 5.79 Total: -1.00 -37.42 384.19 -7.80 -45.22 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -6.70 Total: 2.64 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 0.74 Total: -1.20 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: -0.54 Total: -50.62 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: 0.14 Total: -14.70 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: -1.79 SS G_CDS: -2.21 Total: -4.00 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.42 -7.80 -45.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753680131.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.084 kcal (2) G-P(sol) polarization free energy of solvation -37.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds