Wall clock time and date at job start Tue Mar 31 2020 15:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34329 * 126.44293 * 2 1 4 4 N 1.34483 * 107.66255 * 179.76506 * 3 2 1 5 5 C 1.30257 * 108.70086 * 0.42491 * 4 3 2 6 6 C 1.50704 * 125.61569 * 179.83793 * 5 4 3 7 7 N 1.46898 * 109.47041 * 89.69257 * 6 5 4 8 8 C 1.46906 * 110.99888 * 179.97438 * 7 6 5 9 9 C 1.52993 * 109.47378 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.47318 * 64.99645 * 9 8 7 11 11 C 1.52999 * 109.47457 * 184.99997 * 9 8 7 12 12 N 1.46501 * 109.46854 * 304.99834 * 9 8 7 13 13 C 1.46500 * 120.00408 * 299.99838 * 12 9 8 14 14 C 1.34779 * 119.99966 * 119.99778 * 12 9 8 15 15 O 1.21281 * 120.00104 * 0.02562 * 14 12 9 16 16 C 1.50701 * 120.00259 * 179.97438 * 14 12 9 17 17 S 1.81001 * 109.47541 * 180.02562 * 16 14 12 18 18 C 1.76201 * 100.00021 * 180.02562 * 17 16 14 19 19 H 1.07995 * 119.99785 * 0.02562 * 18 17 16 20 20 C 1.38795 * 119.99485 * 180.02562 * 18 17 16 21 21 N 1.31628 * 120.00290 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99653 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47339 * 59.99700 * 22 20 18 24 24 H 1.48501 * 109.47367 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47002 * 299.99627 * 22 20 18 26 26 O 1.33962 * 108.76292 * 359.57241 * 5 4 3 27 27 H 1.08999 * 109.47727 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47133 * 300.00083 * 1 2 3 29 29 H 1.08994 * 109.47006 * 59.99673 * 1 2 3 30 30 H 1.07997 * 126.17020 * 0.02677 * 3 2 1 31 31 H 1.08997 * 109.46924 * 329.69168 * 6 5 4 32 32 H 1.08995 * 109.46962 * 209.69323 * 6 5 4 33 33 H 1.00901 * 111.00121 * 56.04537 * 7 6 5 34 34 H 1.09004 * 109.47040 * 299.99934 * 8 7 6 35 35 H 1.09000 * 109.47033 * 59.99886 * 8 7 6 36 36 H 1.09001 * 109.47387 * 179.97438 * 11 9 8 37 37 H 1.08993 * 109.46808 * 300.00087 * 11 9 8 38 38 H 1.08999 * 109.47143 * 59.99542 * 11 9 8 39 39 H 1.09006 * 109.47057 * 90.00092 * 13 12 9 40 40 H 1.08995 * 109.47201 * 209.99964 * 13 12 9 41 41 H 1.09002 * 109.46754 * 330.00341 * 13 12 9 42 42 H 1.09000 * 109.47198 * 300.00586 * 16 14 12 43 43 H 1.09003 * 109.47009 * 59.99966 * 16 14 12 44 44 H 0.97008 * 119.99704 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 0.0053 5 6 3.5764 -0.6549 -0.0007 6 6 4.8004 -1.5342 -0.0013 7 7 5.1984 -1.8202 1.3835 8 6 6.3907 -2.6775 1.4222 9 6 6.7736 -2.9534 2.8775 10 1 5.9853 -3.5339 3.3568 11 6 8.0845 -3.7412 2.9195 12 7 6.9444 -1.6829 3.5867 13 6 7.9507 -0.7199 3.1325 14 6 6.1758 -1.4000 4.6571 15 8 5.3430 -2.1973 5.0334 16 6 6.3519 -0.0933 5.3870 17 16 5.1840 -0.0111 6.7674 18 6 5.5971 1.5711 7.4238 19 1 6.3748 2.1610 6.9618 20 6 4.9228 2.0590 8.5345 21 7 3.9753 1.3397 9.0978 22 14 5.3602 3.7367 9.2300 23 1 5.1405 4.7756 8.1918 24 1 4.5020 4.0235 10.4075 25 1 6.7863 3.7444 9.6440 26 8 2.3074 -1.0841 -0.0004 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.9823 2.1112 0.0004 31 1 5.6145 -1.0232 -0.5152 32 1 4.5760 -2.4688 -0.5152 33 1 4.4377 -2.2358 1.9000 34 1 6.1770 -3.6201 0.9182 35 1 7.2161 -2.1749 0.9180 36 1 8.3575 -3.9373 3.9564 37 1 7.9574 -4.6863 2.3919 38 1 8.8728 -3.1607 2.4402 39 1 7.5036 -0.0436 2.4039 40 1 8.3154 -0.1464 3.9846 41 1 8.7817 -1.2533 2.6710 42 1 7.3705 -0.0248 5.7688 43 1 6.1642 0.7336 4.7021 44 1 3.5038 1.6810 9.8739 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753680131.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:47 Heat of formation + Delta-G solvation = -36.470499 kcal Electronic energy + Delta-G solvation = -25465.299729 eV Core-core repulsion = 21737.787475 eV Total energy + Delta-G solvation = -3727.512254 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.34280 -40.92497 -38.15403 -36.32036 -35.72472 -34.58963 -33.73619 -32.83233 -30.18901 -29.40686 -27.73130 -27.64753 -26.61182 -24.75840 -23.29555 -22.62855 -21.98514 -20.30326 -19.54955 -18.26025 -18.07244 -17.85311 -17.22470 -16.88480 -16.71998 -16.39998 -15.86671 -15.80398 -15.58682 -15.07651 -14.64669 -14.55711 -14.39293 -14.16462 -14.07260 -13.86679 -13.51342 -13.37307 -13.28924 -13.24467 -13.18205 -12.99638 -12.87043 -12.83148 -12.60591 -12.53087 -12.34756 -11.79811 -11.67665 -11.55534 -11.13293 -10.77247 -10.27349 -9.74106 -9.58940 -9.39274 -8.66453 -8.34633 -6.12699 0.37388 1.26867 1.43009 1.45761 1.56286 1.59409 1.67725 1.70435 2.20962 2.28946 2.98650 2.98990 3.22476 3.31116 3.72688 3.82048 3.95829 4.04492 4.11478 4.19550 4.26019 4.33699 4.35249 4.37892 4.49062 4.49514 4.61698 4.64664 4.69672 4.73858 4.78796 4.84992 5.00294 5.01113 5.13353 5.15425 5.30047 5.32448 5.40368 5.70682 5.90461 6.11849 6.19085 6.40610 6.71572 7.06060 7.27824 8.74554 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.008835 B = 0.003629 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3168.509783 B = 7713.580259 C = 9966.962989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.048 4.048 3 C -0.070 4.070 4 N -0.495 5.495 5 C 0.175 3.825 6 C 0.168 3.832 7 N -0.698 5.698 8 C 0.060 3.940 9 C 0.131 3.869 10 H 0.069 0.931 11 C -0.150 4.150 12 N -0.587 5.587 13 C 0.076 3.924 14 C 0.536 3.464 15 O -0.572 6.572 16 C -0.121 4.121 17 S -0.151 6.151 18 C -0.548 4.548 19 H 0.079 0.921 20 C 0.015 3.985 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.264 1.264 24 H -0.276 1.276 25 H -0.261 1.261 26 O -0.217 6.217 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.113 0.887 30 H 0.201 0.799 31 H 0.126 0.874 32 H 0.083 0.917 33 H 0.337 0.663 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.045 0.955 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.094 0.906 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.130 -6.720 -24.485 25.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.101 4.101 3 C -0.208 4.208 4 N -0.225 5.225 5 C -0.032 4.032 6 C 0.039 3.961 7 N -0.330 5.330 8 C -0.068 4.068 9 C 0.028 3.972 10 H 0.088 0.912 11 C -0.209 4.209 12 N -0.320 5.320 13 C -0.066 4.066 14 C 0.324 3.676 15 O -0.451 6.451 16 C -0.272 4.272 17 S 0.077 5.923 18 C -0.696 4.696 19 H 0.097 0.903 20 C -0.189 4.189 21 N -0.548 5.548 22 Si 0.819 3.181 23 H -0.188 1.188 24 H -0.201 1.201 25 H -0.185 1.185 26 O -0.104 6.104 27 H 0.102 0.898 28 H 0.117 0.883 29 H 0.132 0.868 30 H 0.217 0.783 31 H 0.144 0.856 32 H 0.101 0.899 33 H 0.154 0.846 34 H 0.088 0.912 35 H 0.119 0.881 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.112 0.888 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.711 -7.020 -23.772 25.063 hybrid contribution -0.272 0.805 0.238 0.882 sum 3.439 -6.215 -23.534 24.583 Atomic orbital electron populations 1.20498 0.81075 1.05248 1.05519 1.24265 0.96685 0.83932 1.05262 1.23523 0.87621 1.01801 1.07849 1.70378 1.24213 1.10265 1.17641 1.26670 0.84684 0.90602 1.01261 1.20332 0.88348 0.96144 0.91307 1.60318 1.09100 1.51728 1.11864 1.22397 0.92782 0.96208 0.95461 1.21249 0.99640 0.84317 0.92008 0.91225 1.22040 0.95611 1.00771 1.02442 1.47584 1.36695 1.19536 1.28140 1.21934 0.91329 0.92601 1.00702 1.19910 0.80332 0.86835 0.80543 1.90637 1.36451 1.50506 1.67507 1.23340 1.04360 0.98690 1.00829 1.85468 1.49079 1.25719 1.32067 1.23161 1.24937 1.03842 1.17683 0.90289 1.26115 0.94105 1.02858 0.95868 1.70183 1.23219 1.39528 1.21821 0.85024 0.78776 0.76602 0.77716 1.18820 1.20090 1.18511 1.84375 1.18370 1.37526 1.70124 0.89789 0.88340 0.86817 0.78257 0.85628 0.89891 0.84603 0.91231 0.88055 0.93544 0.89210 0.89891 0.92121 0.91549 0.87833 0.87875 0.88783 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 10.43 71.24 0.74 -0.17 16 2 C -0.05 -1.13 7.39 24.79 0.18 -0.95 16 3 C -0.07 -1.81 11.80 83.39 0.98 -0.83 16 4 N -0.50 -14.94 11.29 -303.83 -3.43 -18.37 16 5 C 0.18 4.60 7.85 88.34 0.69 5.29 16 6 C 0.17 3.06 6.31 85.56 0.54 3.60 16 7 N -0.70 -15.41 6.22 -517.93 -3.22 -18.63 16 8 C 0.06 0.92 4.98 86.30 0.43 1.35 16 9 C 0.13 2.82 2.88 44.99 0.13 2.95 16 10 H 0.07 1.96 6.90 -2.39 -0.02 1.95 16 11 C -0.15 -2.20 9.17 71.98 0.66 -1.54 16 12 N -0.59 -16.14 2.48 -822.59 -2.04 -18.18 16 13 C 0.08 1.54 9.40 127.77 1.20 2.74 16 14 C 0.54 21.49 7.69 87.66 0.67 22.16 16 15 O -0.57 -27.71 15.19 -3.03 -0.05 -27.76 16 16 C -0.12 -5.30 4.71 71.24 0.34 -4.96 16 17 S -0.15 -8.81 20.57 -56.49 -1.16 -9.98 16 18 C -0.55 -32.75 9.50 67.95 0.65 -32.10 16 19 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 20 C 0.02 0.90 5.49 84.86 0.47 1.36 16 21 N -0.91 -57.43 13.22 21.65 0.29 -57.14 16 22 Si 1.00 44.89 29.55 68.60 2.03 46.91 16 23 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 24 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 26 O -0.22 -5.74 10.78 -3.68 -0.04 -5.78 16 27 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.20 4.05 8.06 -2.91 -0.02 4.03 16 31 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.34 9.03 8.72 -89.69 -0.78 8.25 16 34 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.10 1.15 7.84 -2.39 -0.02 1.13 16 36 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 0.85 6.66 -2.39 -0.02 0.84 16 39 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.07 1.42 6.44 -2.39 -0.02 1.41 16 41 H 0.10 1.30 6.43 -2.39 -0.02 1.29 16 42 H 0.10 4.11 7.40 -2.40 -0.02 4.09 16 43 H 0.09 3.98 8.11 -2.39 -0.02 3.96 16 44 H 0.27 15.85 8.31 -92.70 -0.77 15.08 16 Total: -1.00 -86.33 384.19 0.29 -86.04 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.23 Total: 23.97 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 7.69 Total: -1.10 kcal Atomic # 7 Polarization: -103.91 SS G_CDS: -8.41 Total: -112.32 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -0.09 Total: -33.53 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: -8.81 SS G_CDS: -1.16 Total: -9.98 kcal Total: -86.33 0.29 -86.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753680131.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.574 kcal (2) G-P(sol) polarization free energy of solvation -86.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds