Wall clock time and date at job start Tue Mar 31 2020 15:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30174 * 126.80448 * 2 1 4 4 O 1.20918 * 111.60837 * 179.73357 * 3 2 1 5 5 C 1.34044 * 111.56370 * 359.97438 * 4 3 2 6 6 C 1.35446 * 106.44743 * 359.97438 * 5 4 3 7 7 C 1.50704 * 128.00505 * 180.02562 * 6 5 4 8 8 N 1.46901 * 109.46987 * 259.97654 * 7 6 5 9 9 C 1.46902 * 110.99938 * 293.95081 * 8 7 6 10 10 C 1.46894 * 110.99975 * 170.00396 * 8 7 6 11 11 C 1.53002 * 109.47360 * 189.99803 * 10 8 7 12 12 N 1.46495 * 109.47478 * 179.97438 * 11 10 8 13 13 C 1.46504 * 120.00125 * 269.99950 * 12 11 10 14 14 C 1.34778 * 119.99866 * 90.00246 * 12 11 10 15 15 O 1.21275 * 120.00003 * 359.97438 * 14 12 11 16 16 C 1.50708 * 119.99767 * 180.02562 * 14 12 11 17 17 S 1.81000 * 109.46641 * 179.97438 * 16 14 12 18 18 C 1.76211 * 99.99682 * 179.97438 * 17 16 14 19 19 H 1.07994 * 119.99657 * 359.97438 * 18 17 16 20 20 C 1.38794 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31635 * 120.00310 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00063 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46787 * 359.97438 * 22 20 18 24 24 H 1.48491 * 109.47457 * 119.99908 * 22 20 18 25 25 H 1.48502 * 109.47062 * 240.00318 * 22 20 18 26 26 H 1.09006 * 109.46991 * 90.03020 * 1 2 3 27 27 H 1.08999 * 109.47361 * 210.02423 * 1 2 3 28 28 H 1.08995 * 109.47063 * 330.03017 * 1 2 3 29 29 H 1.08004 * 126.77350 * 180.02562 * 5 4 3 30 30 H 1.08999 * 109.47083 * 19.97348 * 7 6 5 31 31 H 1.09007 * 109.47121 * 139.97728 * 7 6 5 32 32 H 1.09006 * 109.46597 * 60.00185 * 9 8 7 33 33 H 1.09000 * 109.47594 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.47626 * 300.00615 * 9 8 7 35 35 H 1.09006 * 109.47237 * 309.99406 * 10 8 7 36 36 H 1.09001 * 109.47800 * 69.99686 * 10 8 7 37 37 H 1.09001 * 109.47304 * 300.00131 * 11 10 8 38 38 H 1.09006 * 109.47204 * 59.99125 * 11 10 8 39 39 H 1.09002 * 109.46801 * 90.00281 * 13 12 11 40 40 H 1.09000 * 109.46839 * 209.99870 * 13 12 11 41 41 H 1.08995 * 109.47000 * 329.99689 * 13 12 11 42 42 H 1.09002 * 109.46666 * 299.99462 * 16 14 12 43 43 H 1.08999 * 109.47190 * 59.99476 * 16 14 12 44 44 H 0.96994 * 120.00224 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0052 5 6 3.6024 -0.6068 0.0100 6 6 2.3539 -1.1320 0.0078 7 6 1.9590 -2.5864 0.0119 8 7 1.6027 -3.0008 -1.3517 9 6 0.3901 -2.3107 -1.8116 10 6 1.4418 -4.4586 -1.4338 11 6 1.3194 -4.8765 -2.9005 12 7 1.1595 -6.3304 -2.9824 13 6 2.3394 -7.1921 -3.0901 14 6 -0.0730 -6.8752 -2.9587 15 8 -1.0497 -6.1619 -2.8691 16 6 -0.2373 -8.3710 -3.0424 17 16 -1.9976 -8.7885 -2.9858 18 6 -1.8993 -10.5442 -3.0983 19 1 -0.9364 -11.0274 -3.1735 20 6 -3.0595 -11.3061 -3.0904 21 7 -4.2332 -10.7171 -2.9993 22 14 -2.9553 -13.1675 -3.2090 23 1 -1.5313 -13.5786 -3.3017 24 1 -3.5691 -13.7756 -2.0014 25 1 -3.6826 -13.6278 -4.4192 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3634 -0.8897 0.5142 28 1 -0.3633 0.8902 0.5133 29 1 4.5339 -1.1535 0.0156 30 1 2.7948 -3.1888 0.3679 31 1 1.1021 -2.7284 0.6704 32 1 0.5609 -1.2342 -1.8069 33 1 0.1489 -2.6355 -2.8238 34 1 -0.4390 -2.5500 -1.1457 35 1 2.3095 -4.9456 -0.9885 36 1 0.5421 -4.7559 -0.8950 37 1 0.4518 -4.3896 -3.3459 38 1 2.2191 -4.5792 -3.4393 39 1 2.6796 -7.4688 -2.0922 40 1 2.0822 -8.0920 -3.6488 41 1 3.1341 -6.6567 -3.6095 42 1 0.1922 -8.7319 -3.9769 43 1 0.2743 -8.8403 -2.2021 44 1 -5.0438 -11.2496 -2.9934 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753846909.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:54 Heat of formation + Delta-G solvation = 40.212642 kcal Electronic energy + Delta-G solvation = -24991.385353 eV Core-core repulsion = 21267.198330 eV Total energy + Delta-G solvation = -3724.187023 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.22553 -39.64089 -38.16036 -35.59652 -34.70518 -32.56682 -32.45363 -30.66334 -29.44542 -28.46218 -27.45354 -26.65102 -25.55138 -24.67784 -22.09404 -21.60069 -20.98706 -19.20984 -17.92524 -17.75254 -17.68016 -16.77351 -16.25569 -15.79477 -15.68434 -15.23506 -14.99963 -14.82825 -14.26066 -13.92482 -13.83657 -13.67844 -13.28740 -13.23467 -12.97160 -12.88609 -12.71235 -12.56054 -12.47103 -12.27334 -12.08116 -11.81119 -11.51860 -11.26774 -11.09470 -11.04386 -10.96616 -10.76704 -10.19101 -9.82837 -9.80528 -9.41279 -9.09879 -8.74528 -8.51104 -8.25206 -6.53049 -6.24313 -3.95046 1.20055 1.85884 2.85863 2.96957 3.01279 3.19478 3.23489 3.28859 3.52982 3.81825 3.93739 4.17720 4.19460 4.54286 4.63814 4.72929 4.88819 5.00478 5.09677 5.10022 5.11237 5.11552 5.17471 5.26693 5.28839 5.36974 5.41300 5.46125 5.48916 5.51790 5.54657 5.66538 5.72767 5.79011 5.82965 5.87332 5.95611 6.10470 6.50650 6.68883 6.80336 7.48829 7.57491 7.97978 8.32884 8.51453 9.21176 10.83164 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.029694 B = 0.002029 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.739439 B =13796.826277 C =14332.011140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.023 3.977 3 N -0.368 5.368 4 O 0.096 5.904 5 C -0.044 4.044 6 C -0.190 4.190 7 C 0.131 3.869 8 N -0.534 5.534 9 C 0.009 3.991 10 C 0.039 3.961 11 C 0.122 3.878 12 N -0.625 5.625 13 C 0.081 3.919 14 C 0.533 3.467 15 O -0.515 6.515 16 C -0.150 4.150 17 S -0.063 6.063 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.216 0.784 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.033 0.967 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.886 17.047 5.184 25.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.136 4.136 3 N -0.074 5.074 4 O 0.031 5.969 5 C -0.126 4.126 6 C -0.194 4.194 7 C 0.003 3.997 8 N -0.259 5.259 9 C -0.139 4.139 10 C -0.090 4.090 11 C -0.001 4.001 12 N -0.361 5.361 13 C -0.062 4.062 14 C 0.320 3.680 15 O -0.389 6.389 16 C -0.300 4.300 17 S 0.163 5.837 18 C -0.682 4.682 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.105 0.895 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.233 0.767 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 16.408 19.525 5.000 25.990 hybrid contribution 0.646 -3.223 0.379 3.308 sum 17.054 16.303 5.380 24.198 Atomic orbital electron populations 1.20403 0.86104 1.03786 1.03668 1.23525 0.98965 0.88495 1.02644 1.73852 0.89466 1.24191 1.19863 1.84817 1.21531 1.23103 1.67410 1.25784 1.00704 0.83450 1.02702 1.21109 0.92365 0.97085 1.08889 1.20258 1.00779 0.88760 0.89926 1.61982 1.35709 1.06064 1.22121 1.22817 0.90174 0.99646 1.01229 1.22513 1.01339 0.86816 0.98287 1.21325 1.03113 0.80184 0.95512 1.47849 1.06540 1.06468 1.75261 1.21786 0.87568 0.95264 1.01631 1.20378 0.82070 0.90398 0.75110 1.90687 1.37888 1.62827 1.47533 1.23558 1.08088 0.93692 1.04707 1.85397 0.95465 1.06607 1.96197 1.22894 0.95608 0.91270 1.58449 0.90878 1.25000 0.94517 0.99562 0.94560 1.70027 0.97512 1.35940 1.46792 0.86115 0.78324 0.83106 0.77938 1.19602 1.20564 1.20557 0.89525 0.90041 0.90565 0.76708 0.89335 0.93100 0.90805 0.90776 0.94848 0.90638 0.93703 0.89782 0.90086 0.92834 0.90614 0.91264 0.89214 0.89284 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 8.71 36.01 0.31 -0.32 16 2 C 0.02 0.22 6.42 -82.10 -0.53 -0.30 16 3 N -0.37 -4.07 12.07 33.42 0.40 -3.66 16 4 O 0.10 0.90 11.20 17.17 0.19 1.10 16 5 C -0.04 -0.31 12.26 29.74 0.36 0.06 16 6 C -0.19 -1.60 5.38 -104.42 -0.56 -2.16 16 7 C 0.13 1.05 5.46 -4.97 -0.03 1.02 16 8 N -0.53 -5.04 4.75 -244.36 -1.16 -6.20 16 9 C 0.01 0.09 8.00 60.07 0.48 0.57 16 10 C 0.04 0.41 5.28 -3.83 -0.02 0.39 16 11 C 0.12 1.42 5.38 -4.04 -0.02 1.39 16 12 N -0.62 -8.37 2.87 -181.57 -0.52 -8.89 16 13 C 0.08 0.78 10.29 59.85 0.62 1.40 16 14 C 0.53 9.81 7.69 -10.98 -0.08 9.72 16 15 O -0.52 -11.40 15.44 5.56 0.09 -11.31 16 16 C -0.15 -2.98 4.71 36.01 0.17 -2.81 16 17 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 18 C -0.53 -15.03 9.50 30.94 0.29 -14.74 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 21 N -0.87 -25.96 13.22 55.49 0.73 -25.22 16 22 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H 0.09 0.63 6.50 -51.93 -0.34 0.29 16 27 H 0.08 0.57 7.77 -51.93 -0.40 0.17 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.22 0.63 8.06 -52.48 -0.42 0.21 16 30 H 0.09 0.57 7.93 -51.93 -0.41 0.16 16 31 H 0.05 0.42 7.96 -51.93 -0.41 0.01 16 32 H 0.07 0.68 4.09 -51.93 -0.21 0.47 16 33 H 0.07 0.78 6.30 -51.93 -0.33 0.45 16 34 H 0.03 0.34 7.94 -51.93 -0.41 -0.07 16 35 H 0.08 0.69 7.93 -51.93 -0.41 0.28 16 36 H 0.04 0.59 8.12 -51.93 -0.42 0.17 16 37 H 0.08 1.14 5.75 -51.93 -0.30 0.84 16 38 H 0.08 0.78 7.89 -51.93 -0.41 0.37 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.75 6.44 -51.93 -0.33 0.42 16 41 H 0.07 0.50 7.89 -51.93 -0.41 0.09 16 42 H 0.09 1.65 7.40 -51.92 -0.38 1.27 16 43 H 0.09 1.64 8.11 -51.92 -0.42 1.22 16 44 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 374.07 15.07 5.64 5.64 Total: -1.00 -35.18 374.07 -7.39 -42.57 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -6.42 Total: -2.43 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 0.90 Total: -3.83 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: -0.55 Total: -43.98 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.28 Total: -10.22 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.18 -7.39 -42.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753846909.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.782 kcal (2) G-P(sol) polarization free energy of solvation -35.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds