Wall clock time and date at job start Tue Mar 31 2020 15:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30174 * 126.80448 * 2 1 4 4 O 1.20918 * 111.60837 * 179.73357 * 3 2 1 5 5 C 1.34044 * 111.56370 * 359.97438 * 4 3 2 6 6 C 1.35446 * 106.44743 * 359.97438 * 5 4 3 7 7 C 1.50704 * 128.00505 * 180.02562 * 6 5 4 8 8 N 1.46901 * 109.46987 * 259.97654 * 7 6 5 9 9 C 1.46902 * 110.99938 * 293.95081 * 8 7 6 10 10 C 1.46894 * 110.99975 * 170.00396 * 8 7 6 11 11 C 1.53002 * 109.47360 * 189.99803 * 10 8 7 12 12 N 1.46495 * 109.47478 * 179.97438 * 11 10 8 13 13 C 1.46504 * 120.00125 * 269.99950 * 12 11 10 14 14 C 1.34778 * 119.99866 * 90.00246 * 12 11 10 15 15 O 1.21275 * 120.00003 * 359.97438 * 14 12 11 16 16 C 1.50708 * 119.99767 * 180.02562 * 14 12 11 17 17 S 1.81000 * 109.46641 * 179.97438 * 16 14 12 18 18 C 1.76211 * 99.99682 * 179.97438 * 17 16 14 19 19 H 1.07994 * 119.99657 * 359.97438 * 18 17 16 20 20 C 1.38794 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31635 * 120.00310 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00063 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46787 * 359.97438 * 22 20 18 24 24 H 1.48491 * 109.47457 * 119.99908 * 22 20 18 25 25 H 1.48502 * 109.47062 * 240.00318 * 22 20 18 26 26 H 1.09006 * 109.46991 * 90.03020 * 1 2 3 27 27 H 1.08999 * 109.47361 * 210.02423 * 1 2 3 28 28 H 1.08995 * 109.47063 * 330.03017 * 1 2 3 29 29 H 1.08004 * 126.77350 * 180.02562 * 5 4 3 30 30 H 1.08999 * 109.47083 * 19.97348 * 7 6 5 31 31 H 1.09007 * 109.47121 * 139.97728 * 7 6 5 32 32 H 1.09006 * 109.46597 * 60.00185 * 9 8 7 33 33 H 1.09000 * 109.47594 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.47626 * 300.00615 * 9 8 7 35 35 H 1.09006 * 109.47237 * 309.99406 * 10 8 7 36 36 H 1.09001 * 109.47800 * 69.99686 * 10 8 7 37 37 H 1.09001 * 109.47304 * 300.00131 * 11 10 8 38 38 H 1.09006 * 109.47204 * 59.99125 * 11 10 8 39 39 H 1.09002 * 109.46801 * 90.00281 * 13 12 11 40 40 H 1.09000 * 109.46839 * 209.99870 * 13 12 11 41 41 H 1.08995 * 109.47000 * 329.99689 * 13 12 11 42 42 H 1.09002 * 109.46666 * 299.99462 * 16 14 12 43 43 H 1.08999 * 109.47190 * 59.99476 * 16 14 12 44 44 H 0.96994 * 120.00224 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0052 5 6 3.6024 -0.6068 0.0100 6 6 2.3539 -1.1320 0.0078 7 6 1.9590 -2.5864 0.0119 8 7 1.6027 -3.0008 -1.3517 9 6 0.3901 -2.3107 -1.8116 10 6 1.4418 -4.4586 -1.4338 11 6 1.3194 -4.8765 -2.9005 12 7 1.1595 -6.3304 -2.9824 13 6 2.3394 -7.1921 -3.0901 14 6 -0.0730 -6.8752 -2.9587 15 8 -1.0497 -6.1619 -2.8691 16 6 -0.2373 -8.3710 -3.0424 17 16 -1.9976 -8.7885 -2.9858 18 6 -1.8993 -10.5442 -3.0983 19 1 -0.9364 -11.0274 -3.1735 20 6 -3.0595 -11.3061 -3.0904 21 7 -4.2332 -10.7171 -2.9993 22 14 -2.9553 -13.1675 -3.2090 23 1 -1.5313 -13.5786 -3.3017 24 1 -3.5691 -13.7756 -2.0014 25 1 -3.6826 -13.6278 -4.4192 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3634 -0.8897 0.5142 28 1 -0.3633 0.8902 0.5133 29 1 4.5339 -1.1535 0.0156 30 1 2.7948 -3.1888 0.3679 31 1 1.1021 -2.7284 0.6704 32 1 0.5609 -1.2342 -1.8069 33 1 0.1489 -2.6355 -2.8238 34 1 -0.4390 -2.5500 -1.1457 35 1 2.3095 -4.9456 -0.9885 36 1 0.5421 -4.7559 -0.8950 37 1 0.4518 -4.3896 -3.3459 38 1 2.2191 -4.5792 -3.4393 39 1 2.6796 -7.4688 -2.0922 40 1 2.0822 -8.0920 -3.6488 41 1 3.1341 -6.6567 -3.6095 42 1 0.1922 -8.7319 -3.9769 43 1 0.2743 -8.8403 -2.2021 44 1 -5.0438 -11.2496 -2.9934 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753846909.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:53 Heat of formation + Delta-G solvation = 15.511724 kcal Electronic energy + Delta-G solvation = -24992.456466 eV Core-core repulsion = 21267.198330 eV Total energy + Delta-G solvation = -3725.258135 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.90803 -40.90939 -39.00744 -36.70557 -35.51094 -34.58546 -33.26384 -31.82601 -30.13416 -29.65906 -28.16908 -27.69239 -27.52486 -25.62919 -22.96446 -22.22383 -21.72044 -20.59324 -19.52953 -18.62979 -18.39625 -18.07590 -17.35100 -16.88586 -16.84267 -16.53960 -16.26351 -15.96467 -15.60149 -15.09246 -14.75992 -14.48325 -14.41157 -14.26549 -14.11192 -13.92399 -13.61078 -13.55328 -13.33388 -13.20861 -13.15131 -13.03293 -12.91623 -12.71609 -12.59069 -12.29883 -11.93620 -11.86327 -11.67576 -11.16012 -10.92714 -10.84652 -10.44693 -10.26028 -9.75062 -9.40620 -8.67435 -8.34924 -6.13116 0.60688 1.17043 1.27137 1.41491 1.46780 1.57317 1.58765 2.10483 2.27404 2.43495 2.99367 3.04211 3.23563 3.28734 3.59636 3.72858 3.90826 3.98478 4.06357 4.14085 4.23256 4.33588 4.36913 4.44869 4.49344 4.52683 4.56128 4.57600 4.63227 4.72852 4.74474 4.82224 4.86256 4.91950 4.96301 4.99850 5.05297 5.20916 5.42089 5.53407 5.92325 5.95919 6.19922 6.28723 7.06536 7.15677 7.34840 8.74518 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.029694 B = 0.002029 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.739439 B =13796.826277 C =14332.011140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.011 3.989 3 N -0.401 5.401 4 O 0.086 5.914 5 C -0.024 4.024 6 C -0.207 4.207 7 C 0.133 3.867 8 N -0.529 5.529 9 C 0.013 3.987 10 C 0.049 3.951 11 C 0.122 3.878 12 N -0.610 5.610 13 C 0.071 3.929 14 C 0.529 3.471 15 O -0.565 6.565 16 C -0.123 4.123 17 S -0.156 6.156 18 C -0.543 4.543 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.255 1.255 24 H -0.274 1.274 25 H -0.275 1.275 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.259 0.741 30 H 0.113 0.887 31 H 0.043 0.957 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.022 0.978 35 H 0.100 0.900 36 H 0.012 0.988 37 H 0.058 0.942 38 H 0.113 0.887 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.478 15.806 5.279 27.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.148 4.148 3 N -0.109 5.109 4 O 0.024 5.976 5 C -0.105 4.105 6 C -0.212 4.212 7 C 0.006 3.994 8 N -0.253 5.253 9 C -0.135 4.135 10 C -0.079 4.079 11 C -0.001 4.001 12 N -0.344 5.344 13 C -0.071 4.071 14 C 0.317 3.683 15 O -0.443 6.443 16 C -0.274 4.274 17 S 0.071 5.929 18 C -0.691 4.691 19 H 0.102 0.898 20 C -0.193 4.193 21 N -0.549 5.549 22 Si 0.821 3.179 23 H -0.179 1.179 24 H -0.200 1.200 25 H -0.200 1.200 26 H 0.107 0.893 27 H 0.103 0.897 28 H 0.096 0.904 29 H 0.275 0.725 30 H 0.131 0.869 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.118 0.882 36 H 0.030 0.970 37 H 0.076 0.924 38 H 0.131 0.869 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.121 0.879 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 20.075 18.301 5.097 27.639 hybrid contribution -0.325 -2.733 0.353 2.775 sum 19.750 15.568 5.450 25.732 Atomic orbital electron populations 1.20430 0.85585 1.04067 1.03875 1.23871 0.99670 0.88967 1.02307 1.73853 0.90191 1.25220 1.21631 1.84779 1.20948 1.24438 1.67425 1.26553 1.01772 0.82429 0.99787 1.21204 0.92813 0.96886 1.10297 1.20308 1.01394 0.88939 0.88781 1.62014 1.34889 1.05213 1.23226 1.22756 0.90310 1.00057 1.00402 1.22385 1.00840 0.87664 0.97056 1.21464 1.03346 0.78671 0.96616 1.47830 1.05885 1.07752 1.72915 1.22137 0.86588 0.95028 1.03328 1.20171 0.83272 0.89512 0.75361 1.90674 1.39968 1.63421 1.50267 1.23376 1.02329 0.95309 1.06361 1.85598 1.03101 1.07692 1.96531 1.23222 0.96279 0.91303 1.58261 0.89828 1.26145 0.93952 1.05357 0.93834 1.70193 0.98470 1.38183 1.48006 0.84899 0.79140 0.75847 0.78025 1.17853 1.19976 1.20025 0.89320 0.89659 0.90375 0.72530 0.86863 0.93847 0.90190 0.91843 0.95922 0.88174 0.96980 0.92359 0.86905 0.90918 0.90843 0.87864 0.87402 0.87439 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.30 8.71 71.24 0.62 -0.68 16 2 C 0.01 0.20 6.42 43.58 0.28 0.48 16 3 N -0.40 -8.71 12.07 -49.55 -0.60 -9.31 16 4 O 0.09 1.52 11.20 71.60 0.80 2.32 16 5 C -0.02 -0.26 12.26 67.17 0.82 0.56 16 6 C -0.21 -3.12 5.38 -19.74 -0.11 -3.23 16 7 C 0.13 1.86 5.46 85.56 0.47 2.32 16 8 N -0.53 -9.10 4.75 -927.02 -4.41 -13.51 16 9 C 0.01 0.25 8.00 127.69 1.02 1.27 16 10 C 0.05 0.95 5.28 86.31 0.46 1.41 16 11 C 0.12 2.60 5.38 86.38 0.46 3.06 16 12 N -0.61 -15.05 2.87 -846.74 -2.43 -17.48 16 13 C 0.07 1.08 10.29 127.77 1.31 2.39 16 14 C 0.53 19.37 7.69 87.66 0.67 20.04 16 15 O -0.56 -25.95 15.44 -3.02 -0.05 -26.00 16 16 C -0.12 -4.79 4.71 71.24 0.34 -4.46 16 17 S -0.16 -8.65 20.57 -56.49 -1.16 -9.81 16 18 C -0.54 -30.69 9.50 67.95 0.65 -30.05 16 19 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 20 C 0.01 0.66 5.49 84.86 0.47 1.13 16 21 N -0.91 -55.84 13.22 21.65 0.29 -55.56 16 22 Si 1.00 43.15 29.55 68.60 2.03 45.17 16 23 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 26 H 0.09 1.33 6.50 -2.38 -0.02 1.32 16 27 H 0.08 1.24 7.77 -2.39 -0.02 1.22 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.26 0.31 8.06 -2.91 -0.02 0.29 16 30 H 0.11 1.02 7.93 -2.39 -0.02 1.01 16 31 H 0.04 0.68 7.96 -2.38 -0.02 0.66 16 32 H 0.08 1.48 4.09 -2.38 -0.01 1.47 16 33 H 0.06 1.38 6.30 -2.39 -0.02 1.37 16 34 H 0.02 0.49 7.94 -2.39 -0.02 0.47 16 35 H 0.10 1.44 7.93 -2.38 -0.02 1.43 16 36 H 0.01 0.31 8.12 -2.39 -0.02 0.29 16 37 H 0.06 1.59 5.75 -2.39 -0.01 1.57 16 38 H 0.11 1.74 7.89 -2.38 -0.02 1.72 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.07 1.19 6.44 -2.39 -0.02 1.18 16 41 H 0.10 0.94 7.89 -2.39 -0.02 0.92 16 42 H 0.11 3.80 7.40 -2.39 -0.02 3.79 16 43 H 0.11 3.78 8.11 -2.40 -0.02 3.76 16 44 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -80.59 374.07 2.94 -77.66 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 1.01 Total: 12.26 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: 7.46 Total: -5.75 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -7.15 Total: -95.86 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: 0.76 Total: -23.68 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.81 kcal Total: -80.59 2.94 -77.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753846909.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.167 kcal (2) G-P(sol) polarization free energy of solvation -80.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds