Wall clock time and date at job start Tue Mar 31 2020 15:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30255 * 125.61802 * 2 1 4 4 C 1.34482 * 108.69639 * 179.78055 * 3 2 1 5 5 C 1.50703 * 126.16335 * 180.27273 * 4 3 2 6 6 N 1.46895 * 109.47010 * 275.14403 * 5 4 3 7 7 C 1.46905 * 111.00194 * 293.95759 * 6 5 4 8 8 C 1.46899 * 111.00142 * 170.00189 * 6 5 4 9 9 C 1.53000 * 109.47180 * 189.99853 * 8 6 5 10 10 N 1.46504 * 109.46723 * 179.97438 * 9 8 6 11 11 C 1.46501 * 119.99806 * 270.00056 * 10 9 8 12 12 C 1.34776 * 120.00028 * 90.00248 * 10 9 8 13 13 O 1.21282 * 119.99941 * 359.97438 * 12 10 9 14 14 C 1.50703 * 119.99817 * 179.97438 * 12 10 9 15 15 S 1.81004 * 109.46686 * 180.02562 * 14 12 10 16 16 C 1.76201 * 99.99869 * 179.97438 * 15 14 12 17 17 H 1.08009 * 119.99915 * 359.97438 * 16 15 14 18 18 C 1.38794 * 120.00185 * 179.97438 * 16 15 14 19 19 N 1.31636 * 120.00214 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99788 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47222 * 90.00140 * 20 18 16 22 22 H 1.48505 * 109.46833 * 209.99555 * 20 18 16 23 23 H 1.48497 * 109.47176 * 329.99530 * 20 18 16 24 24 C 1.34329 * 107.67064 * 0.39638 * 4 3 2 25 25 O 1.33970 * 125.61861 * 180.02562 * 2 1 3 26 26 H 1.08991 * 109.47205 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46697 * 299.99778 * 1 2 3 28 28 H 1.09007 * 109.47019 * 59.99625 * 1 2 3 29 29 H 1.08997 * 109.47298 * 35.14567 * 5 4 3 30 30 H 1.09003 * 109.46580 * 155.14668 * 5 4 3 31 31 H 1.08991 * 109.47188 * 59.99634 * 7 6 5 32 32 H 1.09002 * 109.47319 * 180.02562 * 7 6 5 33 33 H 1.09001 * 109.46550 * 299.99667 * 7 6 5 34 34 H 1.08998 * 109.46802 * 309.99922 * 8 6 5 35 35 H 1.09000 * 109.46889 * 69.99953 * 8 6 5 36 36 H 1.08998 * 109.47309 * 299.99758 * 9 8 6 37 37 H 1.09000 * 109.47128 * 60.00246 * 9 8 6 38 38 H 1.09000 * 109.47265 * 90.00900 * 11 10 9 39 39 H 1.09001 * 109.47051 * 210.00276 * 11 10 9 40 40 H 1.08996 * 109.47210 * 329.99986 * 11 10 9 41 41 H 1.08999 * 109.46834 * 299.99535 * 14 12 10 42 42 H 1.08997 * 109.47290 * 59.99916 * 14 12 10 43 43 H 0.96997 * 119.99744 * 179.97438 * 19 18 16 44 44 H 1.08002 * 126.44701 * 179.88214 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2657 1.0589 0.0000 4 6 3.5522 0.6674 0.0049 5 6 4.7571 1.5726 0.0124 6 7 5.0802 1.9692 -1.3646 7 6 5.5173 0.8119 -2.1570 8 6 6.0938 3.0324 -1.3822 9 6 6.2229 3.5904 -2.8010 10 7 7.2333 4.6511 -2.8183 11 6 6.8408 6.0407 -2.5707 12 6 8.5239 4.3486 -3.0621 13 8 8.8488 3.1981 -3.2666 14 6 9.5631 5.4398 -3.0805 15 16 11.1864 4.7209 -3.4330 16 6 12.1798 6.1758 -3.3964 17 1 11.7252 7.1351 -3.1971 18 6 13.5462 6.0891 -3.6235 19 7 14.2883 7.1760 -3.5966 20 14 14.3321 4.4300 -3.9687 21 1 14.3241 4.1732 -5.4313 22 1 15.7325 4.4332 -3.4745 23 1 13.5647 3.3648 -3.2748 24 6 3.5698 -0.6757 -0.0009 25 8 2.2873 -1.0891 -0.0005 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 4.5403 2.4613 0.6051 30 1 5.6057 1.0442 0.4469 31 1 4.7204 0.0690 -2.1851 32 1 5.7506 1.1337 -3.1720 33 1 6.4059 0.3747 -1.7016 34 1 5.7944 3.8310 -0.7035 35 1 7.0532 2.6250 -1.0633 36 1 6.5223 2.7918 -3.4797 37 1 5.2635 3.9977 -3.1199 38 1 6.9022 6.2508 -1.5030 39 1 7.5106 6.7093 -3.1116 40 1 5.8179 6.1959 -2.9135 41 1 9.3127 6.1669 -3.8529 42 1 9.5875 5.9347 -2.1097 43 1 15.2433 7.1153 -3.7550 44 1 4.4469 -1.3059 -0.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753847140.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:42 Heat of formation + Delta-G solvation = 0.378064 kcal Electronic energy + Delta-G solvation = -24697.613840 eV Core-core repulsion = 20971.699460 eV Total energy + Delta-G solvation = -3725.914380 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.65577 -39.68820 -37.95803 -35.53733 -34.90137 -32.78156 -32.44429 -30.86572 -29.02218 -28.15195 -27.49625 -26.49976 -25.62959 -24.44487 -22.02862 -21.65839 -21.00686 -19.25775 -17.68945 -17.41262 -17.19338 -16.78602 -16.25486 -15.82192 -15.61238 -15.19576 -15.07930 -14.87211 -14.34326 -14.21804 -13.80145 -13.54096 -13.48808 -13.29657 -13.05912 -12.97083 -12.79940 -12.77012 -12.45812 -12.19382 -11.98577 -11.96594 -11.77800 -11.34802 -11.27070 -11.02236 -10.93879 -10.79775 -10.58405 -9.86673 -9.50442 -9.13252 -9.01062 -8.74740 -8.51989 -8.49009 -6.92760 -6.29544 -4.01317 1.10421 2.26361 2.42075 2.70602 2.91835 3.17002 3.32374 3.49427 3.55412 3.62264 3.90312 4.32269 4.44978 4.48958 4.60424 4.76395 4.83500 4.93541 4.93961 5.05875 5.06661 5.09446 5.12933 5.20577 5.22188 5.31338 5.36026 5.42962 5.46037 5.57700 5.59744 5.66695 5.71301 5.76867 5.78744 5.92191 5.95100 6.01071 6.47773 6.71432 6.80384 7.43275 7.44578 7.93514 8.40865 8.42390 9.16687 10.79649 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.029856 B = 0.002003 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.599684 B =13975.439397 C =14568.194470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.185 3.815 3 N -0.467 5.467 4 C 0.004 3.996 5 C 0.135 3.865 6 N -0.533 5.533 7 C 0.018 3.982 8 C 0.041 3.959 9 C 0.122 3.878 10 N -0.622 5.622 11 C 0.079 3.921 12 C 0.531 3.469 13 O -0.518 6.518 14 C -0.121 4.121 15 S -0.145 6.145 16 C -0.521 4.521 17 H 0.088 0.912 18 C 0.096 3.904 19 N -0.880 5.880 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.236 1.236 24 C -0.075 4.075 25 O -0.204 6.204 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.271 0.729 44 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.485 -12.367 7.750 31.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.022 4.022 3 N -0.197 5.197 4 C -0.117 4.117 5 C 0.007 3.993 6 N -0.257 5.257 7 C -0.130 4.130 8 C -0.087 4.087 9 C -0.001 4.001 10 N -0.358 5.358 11 C -0.065 4.065 12 C 0.319 3.681 13 O -0.393 6.393 14 C -0.271 4.271 15 S 0.082 5.918 16 C -0.668 4.668 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.517 5.517 20 Si 0.682 3.318 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.160 1.160 24 C -0.146 4.146 25 O -0.091 6.091 26 H 0.105 0.895 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.050 0.950 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -27.495 -13.204 7.208 31.342 hybrid contribution 1.301 -0.083 0.468 1.385 sum -26.194 -13.287 7.675 30.358 Atomic orbital electron populations 1.20238 0.81357 1.04606 1.05106 1.26381 0.96597 0.78671 1.00577 1.70335 1.01562 1.30010 1.17783 1.21528 0.93075 0.92198 1.04855 1.20300 0.91045 0.97571 0.90404 1.61846 1.42541 1.10033 1.11317 1.22510 0.98849 0.92785 0.98894 1.22490 0.93456 0.94082 0.98703 1.21346 0.91329 0.91109 0.96326 1.47812 1.07332 1.08139 1.72533 1.21829 1.01406 0.81819 1.01396 1.20340 0.82273 0.90064 0.75428 1.90682 1.79836 1.21242 1.47539 1.23316 0.98134 1.00070 1.05610 1.84775 0.97827 1.15544 1.93680 1.22309 0.95033 0.93209 1.56270 0.89384 1.24710 0.96085 0.97065 0.93437 1.69940 1.06521 1.27821 1.47378 0.86734 0.79873 0.84956 0.80277 1.19210 1.19952 1.15976 1.24793 0.84959 0.96222 1.08617 1.84446 1.16890 1.37848 1.69906 0.89493 0.88548 0.88475 0.88896 0.92791 0.91747 0.90591 0.95035 0.90473 0.93770 0.89801 0.89898 0.92619 0.90504 0.91070 0.88487 0.88501 0.91949 0.77091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.24 10.51 36.01 0.38 0.14 16 2 C 0.18 1.65 8.34 -12.94 -0.11 1.54 16 3 N -0.47 -5.24 11.29 -7.35 -0.08 -5.32 16 4 C 0.00 0.04 5.85 -82.81 -0.48 -0.45 16 5 C 0.13 1.29 5.51 -4.98 -0.03 1.27 16 6 N -0.53 -5.66 4.75 -244.37 -1.16 -6.82 16 7 C 0.02 0.18 9.12 60.07 0.55 0.73 16 8 C 0.04 0.47 5.28 -3.82 -0.02 0.45 16 9 C 0.12 1.47 5.38 -4.04 -0.02 1.44 16 10 N -0.62 -8.39 2.87 -181.57 -0.52 -8.91 16 11 C 0.08 0.79 10.29 59.85 0.62 1.40 16 12 C 0.53 9.57 7.69 -10.98 -0.08 9.49 16 13 O -0.52 -11.10 15.44 5.56 0.09 -11.02 16 14 C -0.12 -2.35 4.71 36.01 0.17 -2.18 16 15 S -0.14 -3.67 18.55 -107.50 -1.99 -5.67 16 16 C -0.52 -14.98 10.04 30.94 0.31 -14.67 16 17 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 18 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 19 N -0.88 -26.50 13.97 55.49 0.78 -25.73 16 20 Si 0.86 21.79 27.74 -169.99 -4.71 17.08 16 21 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 24 C -0.07 -0.64 11.05 29.35 0.32 -0.31 16 25 O -0.20 -1.89 10.78 5.36 0.06 -1.83 16 26 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 27 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.89 7.93 -51.93 -0.41 0.48 16 30 H 0.05 0.46 8.12 -51.93 -0.42 0.03 16 31 H 0.06 0.61 6.55 -51.93 -0.34 0.27 16 32 H 0.08 0.81 6.30 -51.93 -0.33 0.48 16 33 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.80 7.93 -51.93 -0.41 0.39 16 35 H 0.04 0.59 8.12 -51.93 -0.42 0.17 16 36 H 0.08 1.14 5.75 -51.93 -0.30 0.84 16 37 H 0.08 0.86 7.89 -51.93 -0.41 0.45 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.78 6.44 -51.93 -0.33 0.45 16 40 H 0.07 0.55 7.89 -51.93 -0.41 0.14 16 41 H 0.10 1.76 7.40 -51.92 -0.38 1.38 16 42 H 0.10 1.76 8.11 -51.92 -0.42 1.34 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.21 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 379.16 15.07 5.71 5.71 Total: -1.00 -35.99 379.16 -7.04 -43.04 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -6.71 Total: -2.09 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 1.50 Total: 1.55 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: -0.99 Total: -46.78 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.14 Total: -12.85 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.71 Total: 17.08 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.99 Total: -5.67 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.99 -7.04 -43.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753847140.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.416 kcal (2) G-P(sol) polarization free energy of solvation -35.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds