Wall clock time and date at job start Tue Mar 31 2020 15:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30255 * 125.61802 * 2 1 4 4 C 1.34482 * 108.69639 * 179.78055 * 3 2 1 5 5 C 1.50703 * 126.16335 * 180.27273 * 4 3 2 6 6 N 1.46895 * 109.47010 * 275.14403 * 5 4 3 7 7 C 1.46905 * 111.00194 * 293.95759 * 6 5 4 8 8 C 1.46899 * 111.00142 * 170.00189 * 6 5 4 9 9 C 1.53000 * 109.47180 * 189.99853 * 8 6 5 10 10 N 1.46504 * 109.46723 * 179.97438 * 9 8 6 11 11 C 1.46501 * 119.99806 * 270.00056 * 10 9 8 12 12 C 1.34776 * 120.00028 * 90.00248 * 10 9 8 13 13 O 1.21282 * 119.99941 * 359.97438 * 12 10 9 14 14 C 1.50703 * 119.99817 * 179.97438 * 12 10 9 15 15 S 1.81004 * 109.46686 * 180.02562 * 14 12 10 16 16 C 1.76201 * 99.99869 * 179.97438 * 15 14 12 17 17 H 1.08009 * 119.99915 * 359.97438 * 16 15 14 18 18 C 1.38794 * 120.00185 * 179.97438 * 16 15 14 19 19 N 1.31636 * 120.00214 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99788 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47222 * 90.00140 * 20 18 16 22 22 H 1.48505 * 109.46833 * 209.99555 * 20 18 16 23 23 H 1.48497 * 109.47176 * 329.99530 * 20 18 16 24 24 C 1.34329 * 107.67064 * 0.39638 * 4 3 2 25 25 O 1.33970 * 125.61861 * 180.02562 * 2 1 3 26 26 H 1.08991 * 109.47205 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46697 * 299.99778 * 1 2 3 28 28 H 1.09007 * 109.47019 * 59.99625 * 1 2 3 29 29 H 1.08997 * 109.47298 * 35.14567 * 5 4 3 30 30 H 1.09003 * 109.46580 * 155.14668 * 5 4 3 31 31 H 1.08991 * 109.47188 * 59.99634 * 7 6 5 32 32 H 1.09002 * 109.47319 * 180.02562 * 7 6 5 33 33 H 1.09001 * 109.46550 * 299.99667 * 7 6 5 34 34 H 1.08998 * 109.46802 * 309.99922 * 8 6 5 35 35 H 1.09000 * 109.46889 * 69.99953 * 8 6 5 36 36 H 1.08998 * 109.47309 * 299.99758 * 9 8 6 37 37 H 1.09000 * 109.47128 * 60.00246 * 9 8 6 38 38 H 1.09000 * 109.47265 * 90.00900 * 11 10 9 39 39 H 1.09001 * 109.47051 * 210.00276 * 11 10 9 40 40 H 1.08996 * 109.47210 * 329.99986 * 11 10 9 41 41 H 1.08999 * 109.46834 * 299.99535 * 14 12 10 42 42 H 1.08997 * 109.47290 * 59.99916 * 14 12 10 43 43 H 0.96997 * 119.99744 * 179.97438 * 19 18 16 44 44 H 1.08002 * 126.44701 * 179.88214 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2657 1.0589 0.0000 4 6 3.5522 0.6674 0.0049 5 6 4.7571 1.5726 0.0124 6 7 5.0802 1.9692 -1.3646 7 6 5.5173 0.8119 -2.1570 8 6 6.0938 3.0324 -1.3822 9 6 6.2229 3.5904 -2.8010 10 7 7.2333 4.6511 -2.8183 11 6 6.8408 6.0407 -2.5707 12 6 8.5239 4.3486 -3.0621 13 8 8.8488 3.1981 -3.2666 14 6 9.5631 5.4398 -3.0805 15 16 11.1864 4.7209 -3.4330 16 6 12.1798 6.1758 -3.3964 17 1 11.7252 7.1351 -3.1971 18 6 13.5462 6.0891 -3.6235 19 7 14.2883 7.1760 -3.5966 20 14 14.3321 4.4300 -3.9687 21 1 14.3241 4.1732 -5.4313 22 1 15.7325 4.4332 -3.4745 23 1 13.5647 3.3648 -3.2748 24 6 3.5698 -0.6757 -0.0009 25 8 2.2873 -1.0891 -0.0005 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 4.5403 2.4613 0.6051 30 1 5.6057 1.0442 0.4469 31 1 4.7204 0.0690 -2.1851 32 1 5.7506 1.1337 -3.1720 33 1 6.4059 0.3747 -1.7016 34 1 5.7944 3.8310 -0.7035 35 1 7.0532 2.6250 -1.0633 36 1 6.5223 2.7918 -3.4797 37 1 5.2635 3.9977 -3.1199 38 1 6.9022 6.2508 -1.5030 39 1 7.5106 6.7093 -3.1116 40 1 5.8179 6.1959 -2.9135 41 1 9.3127 6.1669 -3.8529 42 1 9.5875 5.9347 -2.1097 43 1 15.2433 7.1153 -3.7550 44 1 4.4469 -1.3059 -0.0010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753847140.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:41 Heat of formation + Delta-G solvation = -27.357176 kcal Electronic energy + Delta-G solvation = -24698.816531 eV Core-core repulsion = 20971.699460 eV Total energy + Delta-G solvation = -3727.117070 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.31306 -40.97048 -38.86590 -36.66497 -35.68741 -34.67582 -33.39528 -31.97163 -30.03134 -29.03808 -28.21879 -27.86519 -27.39327 -25.38800 -22.85014 -22.37643 -21.74310 -20.65803 -19.56503 -18.22043 -18.05532 -17.80013 -17.39415 -17.09582 -16.89621 -16.47432 -16.23240 -16.00334 -15.46650 -15.06993 -15.02602 -14.90066 -14.45375 -14.34441 -14.12225 -13.86590 -13.63014 -13.60130 -13.37667 -13.28845 -13.23645 -13.02251 -12.93739 -12.75528 -12.67090 -12.59276 -12.09571 -11.89641 -11.81179 -11.50591 -11.17694 -10.97212 -10.53267 -9.80978 -9.79080 -9.40352 -9.00862 -8.51974 -6.22974 0.46684 0.97059 1.30584 1.43858 1.48905 1.53307 1.60216 1.85915 2.06371 2.24350 2.67615 2.86202 2.97984 3.10924 3.58226 3.78537 3.86491 3.94709 4.07605 4.15396 4.27659 4.32699 4.33526 4.43353 4.47088 4.52758 4.55210 4.62276 4.67377 4.69305 4.77725 4.81178 4.88262 4.95286 4.96374 5.00827 5.04596 5.35591 5.46532 5.70343 5.90322 5.91869 6.10914 6.22453 6.78525 6.93210 7.06952 8.60316 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.029856 B = 0.002003 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.599684 B =13975.439397 C =14568.194470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.183 3.817 3 N -0.503 5.503 4 C -0.019 4.019 5 C 0.138 3.862 6 N -0.536 5.536 7 C 0.022 3.978 8 C 0.052 3.948 9 C 0.124 3.876 10 N -0.608 5.608 11 C 0.069 3.931 12 C 0.531 3.469 13 O -0.560 6.560 14 C -0.106 4.106 15 S -0.178 6.178 16 C -0.528 4.528 17 H 0.063 0.937 18 C 0.046 3.954 19 N -0.916 5.916 20 Si 0.914 3.086 21 H -0.262 1.262 22 H -0.259 1.259 23 H -0.238 1.238 24 C -0.071 4.071 25 O -0.211 6.211 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.028 0.972 34 H 0.090 0.910 35 H 0.020 0.980 36 H 0.066 0.934 37 H 0.107 0.893 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.101 0.899 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.277 0.723 44 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.497 -13.192 8.146 33.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.025 4.025 3 N -0.234 5.234 4 C -0.138 4.138 5 C 0.010 3.990 6 N -0.261 5.261 7 C -0.126 4.126 8 C -0.077 4.077 9 C 0.001 3.999 10 N -0.342 5.342 11 C -0.072 4.072 12 C 0.319 3.681 13 O -0.439 6.439 14 C -0.257 4.257 15 S 0.049 5.951 16 C -0.676 4.676 17 H 0.081 0.919 18 C -0.159 4.159 19 N -0.554 5.554 20 Si 0.736 3.264 21 H -0.187 1.187 22 H -0.183 1.183 23 H -0.162 1.162 24 C -0.142 4.142 25 O -0.098 6.098 26 H 0.125 0.875 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.109 0.891 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.108 0.892 35 H 0.039 0.961 36 H 0.084 0.916 37 H 0.126 0.874 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.119 0.881 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.086 0.914 44 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -29.550 -13.995 7.619 33.572 hybrid contribution 1.716 0.248 0.388 1.777 sum -27.834 -13.747 8.006 32.059 Atomic orbital electron populations 1.20487 0.78512 1.06229 1.06021 1.27260 0.98042 0.78116 0.99041 1.70313 1.02309 1.31313 1.19422 1.21649 0.92997 0.92965 1.06199 1.20288 0.91364 0.97691 0.89684 1.61853 1.41968 1.10104 1.12143 1.22458 0.98942 0.92825 0.98361 1.22349 0.92571 0.94574 0.98234 1.21447 0.91477 0.90412 0.96550 1.47800 1.05847 1.10119 1.70424 1.22144 1.03090 0.79380 1.02625 1.20058 0.83493 0.88837 0.75737 1.90669 1.80774 1.22444 1.49983 1.23288 0.94930 1.00625 1.06812 1.84700 1.01497 1.14885 1.94044 1.22447 0.95811 0.93558 1.55762 0.91905 1.25549 0.96702 1.00364 0.93308 1.70016 1.07176 1.29755 1.48418 0.85874 0.79534 0.80742 0.80262 1.18716 1.18303 1.16166 1.25277 0.85473 0.96133 1.07303 1.84468 1.17239 1.38151 1.69985 0.87540 0.87355 0.87620 0.89070 0.91833 0.91032 0.91371 0.95326 0.89198 0.96145 0.91592 0.87447 0.91044 0.90610 0.88059 0.86990 0.87072 0.91371 0.74549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.37 10.51 71.24 0.75 0.38 16 2 C 0.18 3.02 8.34 88.34 0.74 3.75 16 3 N -0.50 -10.81 11.29 -291.96 -3.30 -14.11 16 4 C -0.02 -0.36 5.85 41.26 0.24 -0.12 16 5 C 0.14 2.50 5.51 85.56 0.47 2.97 16 6 N -0.54 -10.79 4.75 -927.05 -4.41 -15.19 16 7 C 0.02 0.44 9.12 127.69 1.16 1.60 16 8 C 0.05 1.09 5.28 86.30 0.46 1.55 16 9 C 0.12 2.76 5.38 86.38 0.46 3.22 16 10 N -0.61 -15.20 2.87 -846.75 -2.43 -17.63 16 11 C 0.07 1.17 10.29 127.77 1.31 2.48 16 12 C 0.53 18.66 7.69 87.66 0.67 19.33 16 13 O -0.56 -24.01 15.44 -3.04 -0.05 -24.06 16 14 C -0.11 -4.03 4.71 71.24 0.34 -3.69 16 15 S -0.18 -9.03 18.55 -56.49 -1.05 -10.08 16 16 C -0.53 -30.77 10.04 67.95 0.68 -30.08 16 17 H 0.06 3.85 8.03 -2.91 -0.02 3.82 16 18 C 0.05 2.72 5.50 84.86 0.47 3.18 16 19 N -0.92 -55.67 13.97 21.65 0.30 -55.37 16 20 Si 0.91 45.08 27.74 68.60 1.90 46.98 16 21 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.24 -11.72 6.74 99.48 0.67 -11.05 16 24 C -0.07 -1.11 11.05 66.93 0.74 -0.37 16 25 O -0.21 -3.61 10.78 -3.74 -0.04 -3.65 16 26 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 27 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.11 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.09 1.66 7.93 -2.39 -0.02 1.64 16 30 H 0.06 1.01 8.12 -2.39 -0.02 0.99 16 31 H 0.07 1.28 6.55 -2.39 -0.02 1.27 16 32 H 0.07 1.44 6.30 -2.39 -0.02 1.42 16 33 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.09 1.67 7.93 -2.39 -0.02 1.65 16 35 H 0.02 0.53 8.12 -2.39 -0.02 0.51 16 36 H 0.07 1.76 5.75 -2.39 -0.01 1.74 16 37 H 0.11 1.91 7.89 -2.39 -0.02 1.89 16 38 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.08 1.33 6.44 -2.39 -0.02 1.32 16 40 H 0.10 1.16 7.89 -2.39 -0.02 1.14 16 41 H 0.11 3.93 7.40 -2.40 -0.02 3.91 16 42 H 0.11 3.91 8.11 -2.40 -0.02 3.89 16 43 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 44 H 0.24 2.10 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -78.66 379.16 0.39 -78.27 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 0.96 Total: 10.63 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 8.50 Total: 4.22 kcal Atomic # 7 Polarization: -92.47 SS G_CDS: -9.83 Total: -102.31 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.09 Total: -27.71 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.90 Total: 46.98 kcal Atomic # 16 Polarization: -9.03 SS G_CDS: -1.05 Total: -10.08 kcal Total: -78.66 0.39 -78.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753847140.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.911 kcal (2) G-P(sol) polarization free energy of solvation -78.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds