Wall clock time and date at job start Tue Mar 31 2020 15:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30250 * 125.62069 * 2 1 4 4 C 1.34485 * 108.70025 * 179.97438 * 3 2 1 5 5 C 1.34325 * 107.66767 * 0.02562 * 4 3 2 6 6 C 1.50702 * 126.44374 * 179.97438 * 5 4 3 7 7 N 1.46908 * 109.47101 * 90.02157 * 6 5 4 8 8 C 1.46897 * 111.00083 * 180.02562 * 7 6 5 9 9 C 1.52993 * 109.47157 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47174 * 180.02562 * 9 8 7 11 11 H 1.09005 * 109.47161 * 304.99372 * 10 9 8 12 12 C 1.53003 * 109.47178 * 184.99942 * 10 9 8 13 13 N 1.46491 * 109.47519 * 64.99780 * 10 9 8 14 14 C 1.34779 * 120.00220 * 205.00298 * 13 10 9 15 15 O 1.21284 * 119.99840 * 359.97438 * 14 13 10 16 16 C 1.50700 * 120.00231 * 179.97438 * 14 13 10 17 17 S 1.81006 * 109.47239 * 179.97438 * 16 14 13 18 18 C 1.76198 * 100.00021 * 180.02562 * 17 16 14 19 19 H 1.08008 * 120.00102 * 359.97438 * 18 17 16 20 20 C 1.38795 * 119.99987 * 180.02562 * 18 17 16 21 21 N 1.31636 * 120.00023 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00004 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46944 * 89.99703 * 22 20 18 24 24 H 1.48497 * 109.47049 * 209.99813 * 22 20 18 25 25 H 1.48497 * 109.47428 * 329.99938 * 22 20 18 26 26 O 1.33974 * 125.61592 * 179.97438 * 2 1 3 27 27 H 1.08994 * 109.47516 * 270.02701 * 1 2 3 28 28 H 1.09002 * 109.47000 * 30.03000 * 1 2 3 29 29 H 1.09005 * 109.47091 * 150.02246 * 1 2 3 30 30 H 1.08000 * 126.16216 * 180.02562 * 4 3 2 31 31 H 1.08999 * 109.46996 * 210.02003 * 6 5 4 32 32 H 1.09001 * 109.46826 * 330.02641 * 6 5 4 33 33 H 1.00901 * 110.99506 * 56.04372 * 7 6 5 34 34 H 1.09001 * 109.46894 * 300.00024 * 8 7 6 35 35 H 1.08997 * 109.47035 * 59.99900 * 8 7 6 36 36 H 1.09001 * 109.47096 * 299.99727 * 9 8 7 37 37 H 1.08997 * 109.47371 * 59.99932 * 9 8 7 38 38 H 1.08999 * 109.46894 * 299.99422 * 12 10 9 39 39 H 1.09004 * 109.47436 * 59.99585 * 12 10 9 40 40 H 1.09003 * 109.47118 * 179.97438 * 12 10 9 41 41 H 0.96999 * 120.00492 * 25.00399 * 13 10 9 42 42 H 1.08995 * 109.47457 * 300.00166 * 16 14 13 43 43 H 1.09003 * 109.46917 * 60.00354 * 16 14 13 44 44 H 0.96994 * 119.99755 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0006 5 6 3.5697 -0.6758 0.0004 6 6 4.7936 -1.5551 0.0003 7 7 5.1909 -1.8415 1.3853 8 6 6.3838 -2.6978 1.4244 9 6 6.7658 -2.9740 2.8799 10 6 8.0086 -3.8654 2.9207 11 1 7.8263 -4.7698 2.3401 12 6 8.3175 -4.2439 4.3707 13 7 9.1479 -3.1413 2.3518 14 6 10.1810 -3.8227 1.8180 15 8 10.1676 -5.0354 1.8091 16 6 11.3527 -3.0777 1.2322 17 16 12.5666 -4.2628 0.6010 18 6 13.7917 -3.1517 -0.0065 19 1 13.6448 -2.0852 0.0813 20 6 14.9452 -3.6468 -0.5988 21 7 15.1240 -4.9465 -0.7063 22 14 16.2437 -2.4688 -1.2435 23 1 17.2218 -2.1726 -0.1661 24 1 16.9476 -3.0896 -2.3942 25 1 15.5939 -1.2078 -1.6825 26 8 2.2872 -1.0891 0.0005 27 1 -0.3634 0.0005 1.0276 28 1 -0.3633 0.8897 -0.5143 29 1 -0.3633 -0.8902 -0.5135 30 1 4.4157 1.3161 0.0011 31 1 4.5695 -2.4896 -0.5140 32 1 5.6081 -1.0440 -0.5130 33 1 4.4298 -2.2571 1.9011 34 1 6.1712 -3.6403 0.9198 35 1 7.2092 -2.1943 0.9211 36 1 6.9783 -2.0317 3.3849 37 1 5.9404 -3.4777 3.3829 38 1 8.4998 -3.3396 4.9512 39 1 7.4698 -4.7827 4.7940 40 1 9.2026 -4.8793 4.3996 41 1 9.1588 -2.1714 2.3592 42 1 11.0081 -2.4413 0.4173 43 1 11.8143 -2.4618 2.0041 44 1 15.9303 -5.2925 -1.1199 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753950415.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:33 Heat of formation + Delta-G solvation = -55.051101 kcal Electronic energy + Delta-G solvation = -24036.459800 eV Core-core repulsion = 20308.141831 eV Total energy + Delta-G solvation = -3728.317969 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.33759 -40.77940 -38.23305 -36.52313 -35.79441 -34.58092 -33.59245 -32.74602 -30.87106 -29.87663 -28.41068 -27.65126 -25.53819 -23.57284 -23.27951 -22.37645 -21.93523 -21.51648 -19.82884 -18.06702 -17.90538 -17.83645 -17.33595 -17.00388 -16.87492 -16.40563 -16.02755 -15.81508 -15.54069 -14.99864 -14.74953 -14.68407 -14.61544 -14.26763 -14.02959 -13.82189 -13.72583 -13.57921 -13.26922 -13.19988 -13.15857 -12.93094 -12.88696 -12.58968 -12.32469 -12.24381 -12.14375 -11.79313 -11.70482 -11.57429 -11.14001 -10.87864 -10.26323 -10.08982 -9.79793 -9.51962 -8.65607 -8.34380 -6.12046 0.38102 1.28241 1.42373 1.47942 1.58384 1.61609 1.66283 1.67561 2.26998 2.35112 2.99790 3.03794 3.20414 3.33650 3.69752 3.89958 3.97805 4.03667 4.09787 4.12547 4.15472 4.32328 4.42270 4.48003 4.52333 4.54179 4.63232 4.67574 4.68747 4.70991 4.83909 4.90845 4.98355 5.04499 5.08242 5.20818 5.33283 5.38244 5.42279 5.59972 5.79391 6.20174 6.23632 6.57120 6.70958 7.07125 7.30918 8.74755 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.015245 B = 0.001923 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.245585 B =14555.138242 C =15925.577482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.186 3.814 3 N -0.520 5.520 4 C -0.032 4.032 5 C -0.054 4.054 6 C 0.149 3.851 7 N -0.683 5.683 8 C 0.059 3.941 9 C -0.108 4.108 10 C 0.144 3.856 11 H 0.065 0.935 12 C -0.159 4.159 13 N -0.707 5.707 14 C 0.535 3.465 15 O -0.566 6.566 16 C -0.130 4.130 17 S -0.152 6.152 18 C -0.547 4.547 19 H 0.082 0.918 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.997 3.003 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.258 1.258 26 O -0.214 6.214 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.196 0.804 31 H 0.053 0.947 32 H 0.117 0.883 33 H 0.347 0.653 34 H 0.029 0.971 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.030 0.970 41 H 0.415 0.585 42 H 0.109 0.891 43 H 0.107 0.893 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.179 11.148 5.623 31.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.020 4.020 3 N -0.250 5.250 4 C -0.171 4.171 5 C -0.107 4.107 6 C 0.020 3.980 7 N -0.315 5.315 8 C -0.069 4.069 9 C -0.146 4.146 10 C 0.039 3.961 11 H 0.083 0.917 12 C -0.218 4.218 13 N -0.362 5.362 14 C 0.321 3.679 15 O -0.445 6.445 16 C -0.282 4.282 17 S 0.075 5.925 18 C -0.694 4.694 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.819 3.181 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.182 1.182 26 O -0.102 6.102 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.124 0.876 30 H 0.213 0.787 31 H 0.071 0.929 32 H 0.135 0.865 33 H 0.165 0.835 34 H 0.047 0.953 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.050 0.950 41 H 0.252 0.748 42 H 0.127 0.873 43 H 0.126 0.874 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -29.021 10.150 5.624 31.255 hybrid contribution 1.113 0.504 -0.739 1.428 sum -27.908 10.654 4.884 30.269 Atomic orbital electron populations 1.20534 0.78351 1.06409 1.06150 1.27269 0.97980 0.78108 0.98664 1.70487 1.02950 1.31400 1.20198 1.23381 0.95210 0.93600 1.04866 1.23481 0.83431 0.95629 1.08167 1.20320 0.89612 0.96763 0.91338 1.60530 1.08638 1.50312 1.12032 1.21973 0.92688 0.94668 0.97588 1.21730 0.95937 1.00665 0.96264 1.20986 0.85136 0.95531 0.94475 0.91682 1.22135 1.01918 1.02122 0.95595 1.45900 1.18890 1.10799 1.60566 1.20014 0.83487 0.87345 0.77054 1.90689 1.79833 1.15754 1.58198 1.23387 0.97541 1.02897 1.04349 1.85563 1.17802 1.12543 1.76561 1.23214 1.06271 0.94721 1.45230 0.89941 1.26114 1.00154 0.97491 0.95356 1.70184 1.28014 1.13833 1.42733 0.84968 0.77290 0.77957 0.77864 1.19341 1.20330 1.18187 1.84385 1.17133 1.38415 1.70273 0.87234 0.87218 0.87615 0.78677 0.92872 0.86501 0.83488 0.95259 0.90592 0.89061 0.88704 0.90945 0.89790 0.95035 0.74802 0.87274 0.87431 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.36 10.51 71.24 0.75 0.39 16 2 C 0.19 3.07 8.34 88.34 0.74 3.81 16 3 N -0.52 -10.83 11.29 -303.83 -3.43 -14.26 16 4 C -0.03 -0.60 11.80 83.39 0.98 0.39 16 5 C -0.05 -0.93 6.90 24.79 0.17 -0.76 16 6 C 0.15 2.02 6.23 85.56 0.53 2.55 16 7 N -0.68 -8.88 6.49 -517.93 -3.36 -12.24 16 8 C 0.06 0.82 5.57 86.30 0.48 1.30 16 9 C -0.11 -1.32 5.01 30.59 0.15 -1.17 16 10 C 0.14 2.84 2.57 44.99 0.12 2.95 16 11 H 0.06 1.63 7.58 -2.38 -0.02 1.61 16 12 C -0.16 -3.07 9.48 71.98 0.68 -2.39 16 13 N -0.71 -16.37 4.53 -442.54 -2.00 -18.37 16 14 C 0.54 19.00 7.81 87.66 0.68 19.69 16 15 O -0.57 -25.64 15.53 -3.04 -0.05 -25.69 16 16 C -0.13 -5.06 6.16 71.24 0.44 -4.62 16 17 S -0.15 -8.38 20.57 -56.49 -1.16 -9.55 16 18 C -0.55 -31.11 9.50 67.95 0.65 -30.47 16 19 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 20 C 0.01 0.77 5.49 84.86 0.47 1.24 16 21 N -0.91 -55.94 13.22 21.65 0.29 -55.65 16 22 Si 1.00 43.51 29.55 68.60 2.03 45.53 16 23 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 24 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 26 O -0.21 -3.88 10.78 -3.79 -0.04 -3.92 16 27 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.11 0.29 8.14 -2.38 -0.02 0.27 16 30 H 0.20 2.88 8.06 -2.91 -0.02 2.86 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.35 4.17 8.72 -89.69 -0.78 3.39 16 34 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.08 1.15 7.75 -2.39 -0.02 1.13 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.41 6.94 8.60 -92.71 -0.80 6.14 16 42 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 43 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 44 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -81.04 391.35 -1.46 -82.50 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -0.57 Total: 18.74 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 6.84 Total: -7.09 kcal Atomic # 7 Polarization: -92.01 SS G_CDS: -8.51 Total: -100.53 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.09 Total: -29.61 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.55 kcal Total: -81.04 -1.46 -82.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753950415.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.449 kcal (2) G-P(sol) polarization free energy of solvation -81.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds