Wall clock time and date at job start Tue Mar 31 2020 15:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34336 * 126.44581 * 2 1 4 4 N 1.34476 * 107.66964 * 179.76948 * 3 2 1 5 5 C 1.30261 * 108.70057 * 0.41711 * 4 3 2 6 6 C 1.50697 * 125.61777 * 179.83998 * 5 4 3 7 7 N 1.46905 * 109.47066 * 89.69742 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46916 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.46700 * 179.97438 * 9 8 7 11 11 N 1.46500 * 109.46884 * 179.97438 * 10 9 8 12 12 C 1.46502 * 119.99995 * 90.00303 * 11 10 9 13 13 C 1.34780 * 120.00290 * 270.00432 * 11 10 9 14 14 O 1.21285 * 119.99658 * 359.97438 * 13 11 10 15 15 C 1.50694 * 120.00238 * 180.02562 * 13 11 10 16 16 S 1.81005 * 109.47233 * 179.97438 * 15 13 11 17 17 C 1.76204 * 99.99857 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00342 * 0.02562 * 17 16 15 19 19 C 1.38802 * 119.99504 * 180.02562 * 17 16 15 20 20 N 1.31628 * 120.00191 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99606 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47215 * 60.00086 * 21 19 17 23 23 H 1.48505 * 109.46827 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47228 * 299.99701 * 21 19 17 25 25 O 1.33965 * 108.75961 * 359.58155 * 5 4 3 26 26 H 1.08998 * 109.47227 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46984 * 300.00090 * 1 2 3 28 28 H 1.08995 * 109.47052 * 60.00210 * 1 2 3 29 29 H 1.07996 * 126.16376 * 0.02562 * 3 2 1 30 30 H 1.09001 * 109.47558 * 329.69905 * 6 5 4 31 31 H 1.08998 * 109.47216 * 209.69567 * 6 5 4 32 32 H 1.00901 * 110.99869 * 56.04737 * 7 6 5 33 33 H 1.09004 * 109.47031 * 299.99620 * 8 7 6 34 34 H 1.08995 * 109.47111 * 59.99900 * 8 7 6 35 35 H 1.08995 * 109.46615 * 299.99641 * 9 8 7 36 36 H 1.08996 * 109.46939 * 60.00272 * 9 8 7 37 37 H 1.08993 * 109.47740 * 299.99810 * 10 9 8 38 38 H 1.09005 * 109.47573 * 59.99976 * 10 9 8 39 39 H 1.08996 * 109.47449 * 89.99787 * 12 11 10 40 40 H 1.09000 * 109.47129 * 210.00406 * 12 11 10 41 41 H 1.08997 * 109.46927 * 329.99946 * 12 11 10 42 42 H 1.08999 * 109.47164 * 299.99591 * 15 13 11 43 43 H 1.09001 * 109.47550 * 59.99679 * 15 13 11 44 44 H 0.96997 * 119.99596 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6478 0.0052 5 6 3.5765 -0.6548 -0.0007 6 6 4.8004 -1.5340 -0.0013 7 7 5.1985 -1.8200 1.3836 8 6 6.3915 -2.6763 1.4222 9 6 6.7744 -2.9521 2.8777 10 6 8.0165 -3.8444 2.9179 11 7 8.3835 -4.1081 4.3115 12 6 7.8268 -5.2703 5.0082 13 6 9.2332 -3.2813 4.9526 14 8 9.6944 -2.3194 4.3756 15 6 9.6111 -3.5529 6.3859 16 16 10.7582 -2.2758 6.9598 17 6 11.0254 -2.8248 8.6126 18 1 10.5308 -3.7148 8.9726 19 6 11.8717 -2.1135 9.4519 20 7 12.4750 -1.0291 9.0129 21 14 12.1544 -2.6952 11.2043 22 1 12.7344 -4.0620 11.1847 23 1 13.0932 -1.7694 11.8877 24 1 10.8610 -2.7167 11.9335 25 8 2.3075 -1.0840 -0.0005 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.9822 2.1112 0.0004 30 1 5.6147 -1.0231 -0.5152 31 1 4.5761 -2.4687 -0.5152 32 1 4.4378 -2.2357 1.9000 33 1 6.1787 -3.6190 0.9180 34 1 7.2165 -2.1729 0.9183 35 1 6.9871 -2.0097 3.3822 36 1 5.9492 -3.4557 3.3812 37 1 7.8035 -4.7868 2.4134 38 1 8.8419 -3.3413 2.4142 39 1 8.4826 -6.1289 4.8641 40 1 7.7443 -5.0507 6.0727 41 1 6.8391 -5.4961 4.6063 42 1 8.7149 -3.5420 7.0062 43 1 10.0901 -4.5294 6.4567 44 1 13.0661 -0.5318 9.5996 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754358928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:31 Heat of formation + Delta-G solvation = -12.888256 kcal Electronic energy + Delta-G solvation = -23907.493800 eV Core-core repulsion = 20181.004149 eV Total energy + Delta-G solvation = -3726.489651 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.65405 -39.47938 -37.25049 -35.46737 -35.01856 -33.31135 -32.40582 -32.08169 -29.52468 -28.18423 -26.74779 -25.58591 -25.29827 -23.79596 -22.62751 -21.80525 -21.23661 -19.15124 -17.65300 -17.38672 -17.16053 -16.63754 -16.55914 -15.74698 -15.51856 -15.10222 -14.84055 -14.78262 -14.70129 -14.01183 -13.83141 -13.74643 -13.56173 -13.22479 -13.02524 -12.86064 -12.80328 -12.55862 -12.48820 -12.26282 -12.00955 -11.73015 -11.66962 -11.57174 -11.02318 -11.02079 -10.83341 -10.78955 -10.73084 -9.79225 -9.33179 -9.11115 -9.03707 -8.86000 -8.51852 -8.19980 -6.47339 -6.19027 -3.89608 1.03837 2.22021 2.35878 2.96009 3.08840 3.24940 3.27315 3.30684 3.57233 3.66155 3.93439 4.22656 4.35351 4.58388 4.63368 4.72388 4.83158 4.87652 4.90688 4.99409 5.05178 5.12680 5.15449 5.16318 5.21334 5.26469 5.39674 5.47346 5.50000 5.58388 5.63251 5.67456 5.71555 5.92341 5.95908 6.03807 6.13348 6.15881 6.49550 6.69153 6.85949 7.43487 7.55191 7.61495 8.37216 8.59466 9.25892 10.88323 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018931 B = 0.001754 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.738122 B =15962.049508 C =16575.946348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.049 4.049 3 C -0.043 4.043 4 N -0.460 5.460 5 C 0.188 3.812 6 C 0.160 3.840 7 N -0.682 5.682 8 C 0.066 3.934 9 C -0.134 4.134 10 C 0.121 3.879 11 N -0.626 5.626 12 C 0.081 3.919 13 C 0.532 3.468 14 O -0.513 6.513 15 C -0.150 4.150 16 S -0.061 6.061 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 O -0.205 6.205 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.184 0.816 30 H 0.117 0.883 31 H 0.060 0.940 32 H 0.345 0.655 33 H 0.034 0.966 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.431 -6.330 -19.438 31.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C -0.182 4.182 4 N -0.189 5.189 5 C -0.019 4.019 6 C 0.030 3.970 7 N -0.315 5.315 8 C -0.063 4.063 9 C -0.173 4.173 10 C -0.003 4.003 11 N -0.362 5.362 12 C -0.062 4.062 13 C 0.320 3.680 14 O -0.387 6.387 15 C -0.301 4.301 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.200 1.200 25 O -0.092 6.092 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.201 0.799 30 H 0.135 0.865 31 H 0.078 0.922 32 H 0.163 0.837 33 H 0.053 0.947 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.704 -3.861 -20.182 29.888 hybrid contribution -1.521 -2.694 1.640 3.501 sum -23.225 -6.555 -18.542 30.433 Atomic orbital electron populations 1.20283 0.83928 1.04318 1.03976 1.23500 0.95054 0.84599 1.07115 1.23139 0.87811 1.00495 1.06751 1.70464 1.22865 1.09190 1.16341 1.26069 0.83818 0.90493 1.01550 1.20223 0.89238 0.95624 0.91883 1.60360 1.08733 1.51066 1.11362 1.21915 0.92550 0.94332 0.97552 1.21937 0.97897 1.01770 0.95732 1.21281 0.97368 0.98979 0.82687 1.47854 1.47525 1.27933 1.12887 1.21749 0.98316 0.87933 0.98232 1.20352 0.77498 0.81847 0.88318 1.90702 1.52468 1.27908 1.67583 1.23558 1.05160 1.06717 0.94661 1.85412 1.53985 1.31236 1.12804 1.22822 1.33168 1.14830 0.97610 0.91020 1.24988 0.94851 0.94619 0.99096 1.70009 1.28009 1.15711 1.36502 0.86232 0.78237 0.78587 0.82481 1.19960 1.20810 1.19959 1.84375 1.18003 1.36805 1.69995 0.90428 0.89196 0.89297 0.79920 0.86540 0.92212 0.83715 0.94737 0.89922 0.89959 0.92072 0.91051 0.89624 0.92759 0.90679 0.91559 0.89304 0.89324 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.27 10.43 36.00 0.38 0.10 16 2 C -0.05 -0.41 7.39 -35.69 -0.26 -0.68 16 3 C -0.04 -0.41 11.80 -17.77 -0.21 -0.62 16 4 N -0.46 -5.64 11.29 -11.10 -0.13 -5.77 16 5 C 0.19 1.98 7.86 -12.95 -0.10 1.88 16 6 C 0.16 1.30 6.31 -4.97 -0.03 1.27 16 7 N -0.68 -6.30 6.49 -115.05 -0.75 -7.05 16 8 C 0.07 0.55 5.69 -3.82 -0.02 0.53 16 9 C -0.13 -1.42 5.80 -26.73 -0.16 -1.57 16 10 C 0.12 1.37 5.41 -4.04 -0.02 1.34 16 11 N -0.63 -8.70 2.87 -181.58 -0.52 -9.23 16 12 C 0.08 0.82 10.24 59.85 0.61 1.44 16 13 C 0.53 10.21 7.69 -10.99 -0.08 10.12 16 14 O -0.51 -11.82 15.44 5.55 0.09 -11.73 16 15 C -0.15 -3.10 4.71 36.00 0.17 -2.93 16 16 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 17 C -0.54 -15.40 9.50 30.94 0.29 -15.10 16 18 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 20 N -0.87 -26.38 13.22 55.49 0.73 -25.64 16 21 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 25 O -0.20 -2.04 10.78 5.36 0.06 -1.98 16 26 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.18 1.23 8.06 -52.49 -0.42 0.81 16 30 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.34 2.93 8.72 -39.29 -0.34 2.59 16 33 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 38 H 0.09 1.12 7.42 -51.93 -0.39 0.74 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.79 6.44 -51.93 -0.33 0.46 16 41 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 42 H 0.09 1.70 7.40 -51.92 -0.38 1.31 16 43 H 0.09 1.69 8.11 -51.91 -0.42 1.27 16 44 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 389.68 15.07 5.87 5.87 Total: -1.00 -37.42 389.68 -8.31 -45.73 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -6.90 Total: -0.62 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 0.47 Total: -2.19 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: -0.66 Total: -47.69 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 0.14 Total: -13.72 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.42 -8.31 -45.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754358928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.846 kcal (2) G-P(sol) polarization free energy of solvation -37.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds