Wall clock time and date at job start Tue Mar 31 2020 15:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34336 * 126.44581 * 2 1 4 4 N 1.34476 * 107.66964 * 179.76948 * 3 2 1 5 5 C 1.30261 * 108.70057 * 0.41711 * 4 3 2 6 6 C 1.50697 * 125.61777 * 179.83998 * 5 4 3 7 7 N 1.46905 * 109.47066 * 89.69742 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46916 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.46700 * 179.97438 * 9 8 7 11 11 N 1.46500 * 109.46884 * 179.97438 * 10 9 8 12 12 C 1.46502 * 119.99995 * 90.00303 * 11 10 9 13 13 C 1.34780 * 120.00290 * 270.00432 * 11 10 9 14 14 O 1.21285 * 119.99658 * 359.97438 * 13 11 10 15 15 C 1.50694 * 120.00238 * 180.02562 * 13 11 10 16 16 S 1.81005 * 109.47233 * 179.97438 * 15 13 11 17 17 C 1.76204 * 99.99857 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00342 * 0.02562 * 17 16 15 19 19 C 1.38802 * 119.99504 * 180.02562 * 17 16 15 20 20 N 1.31628 * 120.00191 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99606 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47215 * 60.00086 * 21 19 17 23 23 H 1.48505 * 109.46827 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47228 * 299.99701 * 21 19 17 25 25 O 1.33965 * 108.75961 * 359.58155 * 5 4 3 26 26 H 1.08998 * 109.47227 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46984 * 300.00090 * 1 2 3 28 28 H 1.08995 * 109.47052 * 60.00210 * 1 2 3 29 29 H 1.07996 * 126.16376 * 0.02562 * 3 2 1 30 30 H 1.09001 * 109.47558 * 329.69905 * 6 5 4 31 31 H 1.08998 * 109.47216 * 209.69567 * 6 5 4 32 32 H 1.00901 * 110.99869 * 56.04737 * 7 6 5 33 33 H 1.09004 * 109.47031 * 299.99620 * 8 7 6 34 34 H 1.08995 * 109.47111 * 59.99900 * 8 7 6 35 35 H 1.08995 * 109.46615 * 299.99641 * 9 8 7 36 36 H 1.08996 * 109.46939 * 60.00272 * 9 8 7 37 37 H 1.08993 * 109.47740 * 299.99810 * 10 9 8 38 38 H 1.09005 * 109.47573 * 59.99976 * 10 9 8 39 39 H 1.08996 * 109.47449 * 89.99787 * 12 11 10 40 40 H 1.09000 * 109.47129 * 210.00406 * 12 11 10 41 41 H 1.08997 * 109.46927 * 329.99946 * 12 11 10 42 42 H 1.08999 * 109.47164 * 299.99591 * 15 13 11 43 43 H 1.09001 * 109.47550 * 59.99679 * 15 13 11 44 44 H 0.96997 * 119.99596 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6478 0.0052 5 6 3.5765 -0.6548 -0.0007 6 6 4.8004 -1.5340 -0.0013 7 7 5.1985 -1.8200 1.3836 8 6 6.3915 -2.6763 1.4222 9 6 6.7744 -2.9521 2.8777 10 6 8.0165 -3.8444 2.9179 11 7 8.3835 -4.1081 4.3115 12 6 7.8268 -5.2703 5.0082 13 6 9.2332 -3.2813 4.9526 14 8 9.6944 -2.3194 4.3756 15 6 9.6111 -3.5529 6.3859 16 16 10.7582 -2.2758 6.9598 17 6 11.0254 -2.8248 8.6126 18 1 10.5308 -3.7148 8.9726 19 6 11.8717 -2.1135 9.4519 20 7 12.4750 -1.0291 9.0129 21 14 12.1544 -2.6952 11.2043 22 1 12.7344 -4.0620 11.1847 23 1 13.0932 -1.7694 11.8877 24 1 10.8610 -2.7167 11.9335 25 8 2.3075 -1.0840 -0.0005 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.9822 2.1112 0.0004 30 1 5.6147 -1.0231 -0.5152 31 1 4.5761 -2.4687 -0.5152 32 1 4.4378 -2.2357 1.9000 33 1 6.1787 -3.6190 0.9180 34 1 7.2165 -2.1729 0.9183 35 1 6.9871 -2.0097 3.3822 36 1 5.9492 -3.4557 3.3812 37 1 7.8035 -4.7868 2.4134 38 1 8.8419 -3.3413 2.4142 39 1 8.4826 -6.1289 4.8641 40 1 7.7443 -5.0507 6.0727 41 1 6.8391 -5.4961 4.6063 42 1 8.7149 -3.5420 7.0062 43 1 10.0901 -4.5294 6.4567 44 1 13.0661 -0.5318 9.5996 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754358928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:31 Heat of formation + Delta-G solvation = -42.371664 kcal Electronic energy + Delta-G solvation = -23908.772296 eV Core-core repulsion = 20181.004149 eV Total energy + Delta-G solvation = -3727.768147 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.35400 -40.83592 -38.04424 -36.64452 -35.77456 -34.58372 -34.03801 -32.85359 -30.80121 -29.05360 -27.68987 -27.60578 -26.16788 -24.67692 -23.30688 -22.61766 -21.96207 -20.59509 -19.51604 -18.09566 -18.03993 -17.84891 -17.41937 -16.89965 -16.85000 -16.73544 -15.98156 -15.70769 -15.50610 -15.46240 -14.70231 -14.52145 -14.44272 -14.30320 -14.22461 -13.84262 -13.55391 -13.49510 -13.30412 -13.21792 -13.16269 -12.94507 -12.86256 -12.75444 -12.63383 -12.49228 -12.36945 -11.76599 -11.64632 -11.53891 -11.12609 -10.86743 -10.26568 -9.76743 -9.66176 -9.48514 -8.67521 -8.34020 -6.12912 0.36312 1.26514 1.44194 1.46430 1.54893 1.57428 1.61380 1.65898 2.16115 2.28347 2.96938 2.99796 3.24837 3.29418 3.74068 3.81652 3.99178 4.04712 4.08837 4.16731 4.23698 4.27694 4.36182 4.39525 4.47960 4.48800 4.51589 4.62371 4.67797 4.69006 4.72065 4.82732 4.95689 5.02098 5.16653 5.17209 5.23042 5.29762 5.41269 5.64048 5.83746 6.19614 6.23561 6.30040 6.72488 7.06625 7.18020 8.75038 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018931 B = 0.001754 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.738122 B =15962.049508 C =16575.946348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.044 4.044 3 C -0.071 4.071 4 N -0.501 5.501 5 C 0.176 3.824 6 C 0.164 3.836 7 N -0.702 5.702 8 C 0.073 3.927 9 C -0.124 4.124 10 C 0.118 3.882 11 N -0.612 5.612 12 C 0.071 3.929 13 C 0.527 3.473 14 O -0.565 6.565 15 C -0.123 4.123 16 S -0.156 6.156 17 C -0.547 4.547 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 1.000 3.000 22 H -0.261 1.261 23 H -0.279 1.279 24 H -0.262 1.262 25 O -0.211 6.211 26 H 0.085 0.915 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.202 0.798 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.349 0.651 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.034 0.966 36 H 0.079 0.921 37 H 0.118 0.882 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.877 -9.340 -19.351 33.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.097 4.097 3 C -0.209 4.209 4 N -0.231 5.231 5 C -0.031 4.031 6 C 0.035 3.965 7 N -0.336 5.336 8 C -0.055 4.055 9 C -0.163 4.163 10 C -0.005 4.005 11 N -0.346 5.346 12 C -0.071 4.071 13 C 0.315 3.685 14 O -0.444 6.444 15 C -0.275 4.275 16 S 0.071 5.929 17 C -0.695 4.695 18 H 0.101 0.899 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.185 1.185 23 H -0.204 1.204 24 H -0.186 1.186 25 O -0.099 6.099 26 H 0.104 0.896 27 H 0.123 0.877 28 H 0.127 0.873 29 H 0.219 0.781 30 H 0.131 0.869 31 H 0.106 0.894 32 H 0.167 0.833 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.097 0.903 37 H 0.136 0.864 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -24.202 -6.924 -20.117 32.224 hybrid contribution -0.904 -1.806 1.504 2.518 sum -25.106 -8.731 -18.613 32.450 Atomic orbital electron populations 1.20513 0.80773 1.05366 1.05629 1.24302 0.96661 0.83798 1.04941 1.23557 0.87357 1.01962 1.07989 1.70425 1.24603 1.10437 1.17618 1.26465 0.84606 0.90432 1.01595 1.20286 0.88361 0.96424 0.91474 1.60276 1.09158 1.51844 1.12316 1.21817 0.92000 0.95667 0.96062 1.21797 0.98040 0.99424 0.97043 1.21517 0.96750 1.01147 0.81086 1.47880 1.45401 1.27513 1.13789 1.22097 1.00469 0.86601 0.97913 1.20170 0.78422 0.82139 0.87810 1.90684 1.54949 1.30366 1.68377 1.23378 1.03729 1.04351 0.95997 1.85618 1.57178 1.35932 1.14187 1.23167 1.33467 1.15238 0.97592 0.89862 1.26156 0.94243 0.94516 1.04287 1.70187 1.28883 1.17277 1.38442 0.84990 0.78588 0.78425 0.75896 1.18518 1.20408 1.18633 1.84383 1.18018 1.37418 1.70034 0.89644 0.87699 0.87291 0.78137 0.86859 0.89383 0.83283 0.91302 0.90958 0.94663 0.90282 0.86403 0.92010 0.90934 0.91108 0.87893 0.87592 0.87461 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.43 71.23 0.74 0.36 16 2 C -0.04 -0.69 7.39 24.79 0.18 -0.51 16 3 C -0.07 -1.35 11.80 83.40 0.98 -0.37 16 4 N -0.50 -12.60 11.29 -303.83 -3.43 -16.03 16 5 C 0.18 3.69 7.86 88.34 0.69 4.39 16 6 C 0.16 2.53 6.31 85.55 0.54 3.07 16 7 N -0.70 -12.40 6.49 -517.92 -3.36 -15.77 16 8 C 0.07 1.12 5.69 86.30 0.49 1.61 16 9 C -0.12 -2.47 5.80 30.59 0.18 -2.29 16 10 C 0.12 2.44 5.41 86.38 0.47 2.91 16 11 N -0.61 -15.92 2.87 -846.77 -2.43 -18.35 16 12 C 0.07 1.17 10.24 127.77 1.31 2.48 16 13 C 0.53 20.37 7.69 87.65 0.67 21.04 16 14 O -0.57 -27.32 15.44 -3.05 -0.05 -27.36 16 15 C -0.12 -5.07 4.71 71.23 0.34 -4.73 16 16 S -0.16 -8.93 20.57 -56.49 -1.16 -10.09 16 17 C -0.55 -31.72 9.50 67.95 0.65 -31.08 16 18 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 19 C 0.01 0.73 5.49 84.86 0.47 1.20 16 20 N -0.91 -56.92 13.22 21.65 0.29 -56.63 16 21 Si 1.00 43.98 29.55 68.60 2.03 46.00 16 22 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 23 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 24 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 25 O -0.21 -4.04 10.78 -3.73 -0.04 -4.08 16 26 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.10 0.34 8.14 -2.38 -0.02 0.32 16 28 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.20 2.69 8.06 -2.91 -0.02 2.67 16 30 H 0.11 1.77 8.14 -2.39 -0.02 1.76 16 31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.35 5.50 8.72 -89.69 -0.78 4.71 16 33 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.12 1.42 8.07 -2.39 -0.02 1.40 16 38 H 0.06 1.62 7.42 -2.38 -0.02 1.60 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.07 1.27 6.44 -2.39 -0.02 1.25 16 41 H 0.10 1.02 8.07 -2.39 -0.02 1.00 16 42 H 0.11 3.95 7.40 -2.40 -0.02 3.94 16 43 H 0.11 3.97 8.11 -2.40 -0.02 3.95 16 44 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -87.12 389.68 -0.23 -87.35 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.22 Total: 16.90 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 7.71 Total: -1.94 kcal Atomic # 7 Polarization: -97.84 SS G_CDS: -8.94 Total: -106.78 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -0.09 Total: -31.45 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: -8.93 SS G_CDS: -1.16 Total: -10.09 kcal Total: -87.12 -0.23 -87.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754358928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.982 kcal (2) G-P(sol) polarization free energy of solvation -87.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds