Wall clock time and date at job start Tue Mar 31 2020 15:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34333 * 126.44063 * 2 1 4 4 N 1.34479 * 107.66487 * 179.76525 * 3 2 1 5 5 C 1.30249 * 108.70461 * 0.41777 * 4 3 2 6 6 C 1.50698 * 125.62475 * 179.84196 * 5 4 3 7 7 N 1.46898 * 109.47103 * 89.68897 * 6 5 4 8 8 C 1.46910 * 111.00082 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.46533 * 35.00684 * 8 7 6 10 10 C 1.52996 * 109.47305 * 275.00524 * 8 7 6 11 11 C 1.52997 * 109.47171 * 155.00194 * 8 7 6 12 12 H 1.09001 * 109.46922 * 295.00468 * 11 8 7 13 13 C 1.53006 * 109.47164 * 55.00220 * 11 8 7 14 14 N 1.46496 * 109.47194 * 175.00134 * 11 8 7 15 15 C 1.34773 * 119.99909 * 155.00140 * 14 11 8 16 16 O 1.21277 * 120.00549 * 359.97438 * 15 14 11 17 17 C 1.50703 * 119.99847 * 180.02562 * 15 14 11 18 18 S 1.81003 * 109.47081 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00192 * 180.02562 * 18 17 15 20 20 H 1.08007 * 119.99936 * 359.97438 * 19 18 17 21 21 C 1.38793 * 120.00306 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00440 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 119.99848 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47375 * 89.99985 * 23 21 19 25 25 H 1.48509 * 109.47291 * 209.99707 * 23 21 19 26 26 H 1.48492 * 109.47325 * 329.99977 * 23 21 19 27 27 O 1.33970 * 108.75694 * 359.57801 * 5 4 3 28 28 H 1.08995 * 109.46810 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47468 * 300.00316 * 1 2 3 30 30 H 1.09005 * 109.46778 * 60.00714 * 1 2 3 31 31 H 1.08000 * 126.16823 * 0.02562 * 3 2 1 32 32 H 1.09001 * 109.46855 * 329.69476 * 6 5 4 33 33 H 1.08995 * 109.47796 * 209.69430 * 6 5 4 34 34 H 1.00901 * 110.99830 * 56.05274 * 7 6 5 35 35 H 1.09004 * 109.47120 * 59.99813 * 10 8 7 36 36 H 1.08998 * 109.47375 * 179.97438 * 10 8 7 37 37 H 1.09000 * 109.46912 * 300.00130 * 10 8 7 38 38 H 1.09001 * 109.47002 * 59.99738 * 13 11 8 39 39 H 1.08993 * 109.46955 * 180.02562 * 13 11 8 40 40 H 1.09000 * 109.47050 * 300.00004 * 13 11 8 41 41 H 0.97003 * 119.99825 * 335.00349 * 14 11 8 42 42 H 1.08988 * 109.47257 * 300.00034 * 17 15 14 43 43 H 1.08997 * 109.47148 * 60.00429 * 17 15 14 44 44 H 0.96996 * 120.00231 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0807 0.0000 4 7 3.5781 0.6478 0.0053 5 6 3.5766 -0.6546 -0.0006 6 6 4.8004 -1.5339 -0.0010 7 7 5.1985 -1.8197 1.3839 8 6 6.3915 -2.6761 1.4227 9 1 7.0484 -2.4218 0.5908 10 6 5.9705 -4.1427 1.3103 11 6 7.1331 -2.4580 2.7431 12 1 7.5101 -1.4361 2.7836 13 6 6.1741 -2.6945 3.9116 14 7 8.2544 -3.3963 2.8341 15 6 9.3216 -3.0986 3.6015 16 8 9.3538 -2.0538 4.2165 17 6 10.4754 -4.0636 3.6947 18 16 11.7436 -3.3834 4.7926 19 6 12.9376 -4.6771 4.7193 20 1 12.7497 -5.5518 4.1142 21 6 14.1196 -4.5722 5.4391 22 7 15.0115 -5.5388 5.3848 23 14 14.4443 -3.0597 6.4862 24 1 13.9200 -3.2850 7.8573 25 1 15.9063 -2.8068 6.5508 26 1 13.7649 -1.8850 5.8833 27 8 2.3075 -1.0839 -0.0003 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.9821 2.1113 0.0004 32 1 5.6146 -1.0230 -0.5149 33 1 4.5762 -2.4686 -0.5148 34 1 4.4378 -2.2353 1.9003 35 1 5.4422 -4.2980 0.3696 36 1 6.8557 -4.7780 1.3387 37 1 5.3136 -4.3968 2.1421 38 1 5.7970 -3.7164 3.8711 39 1 6.7023 -2.5387 4.8522 40 1 5.3398 -1.9964 3.8439 41 1 8.2289 -4.2318 2.3419 42 1 10.1222 -5.0149 4.0924 43 1 10.8997 -4.2194 2.7029 44 1 15.8377 -5.4653 5.8875 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755226104.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:52 Heat of formation + Delta-G solvation = -15.315884 kcal Electronic energy + Delta-G solvation = -24529.351327 eV Core-core repulsion = 20802.756407 eV Total energy + Delta-G solvation = -3726.594921 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.70930 -39.78614 -37.99442 -35.20804 -34.85286 -33.02690 -32.42527 -31.51454 -29.82757 -28.53478 -27.81727 -25.60748 -25.39711 -24.34950 -22.68477 -21.39365 -20.85604 -19.88746 -18.01889 -17.48209 -17.23318 -16.60537 -16.23641 -15.89416 -15.41592 -15.10342 -14.98447 -14.84515 -14.45409 -14.12664 -13.98236 -13.70597 -13.49455 -13.38727 -13.19376 -13.02181 -12.84298 -12.78017 -12.56569 -12.43547 -12.06298 -11.89138 -11.66321 -11.25487 -11.16838 -11.00704 -10.98040 -10.84507 -10.57739 -9.84018 -9.47179 -9.16992 -9.03670 -8.98249 -8.86216 -8.47839 -6.89788 -6.27667 -3.99134 0.98426 2.15881 2.29985 2.77679 3.01681 3.26160 3.34916 3.52449 3.54155 3.67909 3.95704 4.29918 4.34818 4.41741 4.49577 4.58305 4.59232 4.75727 4.81316 4.83566 4.86366 4.96859 5.11505 5.12313 5.15878 5.21936 5.36793 5.44443 5.44957 5.50918 5.62280 5.63524 5.77779 5.78579 5.90693 6.02643 6.05854 6.26091 6.34937 6.62314 6.79659 7.37994 7.64620 7.95344 8.42578 8.54348 9.18720 10.81531 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.036236 B = 0.001850 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.527515 B =15131.750619 C =15462.838327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.048 4.048 3 C -0.044 4.044 4 N -0.459 5.459 5 C 0.188 3.812 6 C 0.160 3.840 7 N -0.672 5.672 8 C 0.081 3.919 9 H 0.090 0.910 10 C -0.191 4.191 11 C 0.156 3.844 12 H 0.096 0.904 13 C -0.163 4.163 14 N -0.734 5.734 15 C 0.532 3.468 16 O -0.516 6.516 17 C -0.124 4.124 18 S -0.141 6.141 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.881 5.881 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 O -0.204 6.204 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.183 0.817 32 H 0.117 0.883 33 H 0.062 0.938 34 H 0.349 0.651 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.396 0.604 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.440 6.008 -13.935 34.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.101 4.101 3 C -0.183 4.183 4 N -0.188 5.188 5 C -0.019 4.019 6 C 0.030 3.970 7 N -0.306 5.306 8 C -0.029 4.029 9 H 0.109 0.891 10 C -0.249 4.249 11 C 0.050 3.950 12 H 0.114 0.886 13 C -0.222 4.222 14 N -0.390 5.390 15 C 0.318 3.682 16 O -0.390 6.390 17 C -0.275 4.275 18 S 0.085 5.915 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.159 1.159 27 O -0.091 6.091 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.201 0.799 32 H 0.135 0.865 33 H 0.080 0.920 34 H 0.168 0.832 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.231 0.769 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -29.307 8.589 -12.781 33.106 hybrid contribution -0.728 -2.394 -0.696 2.597 sum -30.035 6.195 -13.477 33.498 Atomic orbital electron populations 1.20288 0.83937 1.04351 1.03979 1.23500 0.95055 0.84596 1.06992 1.23134 0.87814 1.00482 1.06821 1.70458 1.22856 1.09181 1.16310 1.26029 0.83804 0.90454 1.01655 1.20261 0.89327 0.95655 0.91742 1.60362 1.08352 1.50357 1.11491 1.21753 0.91853 0.90496 0.98809 0.89142 1.22604 1.02626 0.97318 1.02389 1.20724 0.86037 0.95087 0.93126 0.88558 1.22190 0.99616 1.01285 0.99095 1.46137 1.18978 1.23180 1.50693 1.20253 0.82531 0.87209 0.78253 1.90706 1.79631 1.25252 1.43448 1.23285 0.97529 1.01349 1.05353 1.84807 1.15914 1.30425 1.60324 1.22326 1.04143 1.05535 1.34929 0.89425 1.24708 0.94642 0.96440 0.95495 1.69938 1.08665 1.32141 1.40998 0.86735 0.78666 0.84578 0.81883 1.19226 1.19955 1.15883 1.84380 1.17990 1.36786 1.69958 0.90403 0.89203 0.89282 0.79948 0.86495 0.91995 0.83188 0.92269 0.91264 0.91425 0.92835 0.91818 0.91280 0.76863 0.88602 0.88528 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.23 10.43 36.01 0.38 0.14 16 2 C -0.05 -0.36 7.39 -35.69 -0.26 -0.63 16 3 C -0.04 -0.38 11.80 -17.77 -0.21 -0.59 16 4 N -0.46 -5.15 11.29 -11.10 -0.13 -5.27 16 5 C 0.19 1.78 7.86 -12.95 -0.10 1.68 16 6 C 0.16 1.13 6.11 -4.98 -0.03 1.10 16 7 N -0.67 -5.18 5.59 -107.99 -0.60 -5.79 16 8 C 0.08 0.61 2.64 -67.71 -0.18 0.44 16 9 H 0.09 0.68 7.80 -51.93 -0.40 0.27 16 10 C -0.19 -1.11 8.68 37.16 0.32 -0.79 16 11 C 0.16 1.72 2.63 -67.93 -0.18 1.54 16 12 H 0.10 1.35 7.58 -51.93 -0.39 0.96 16 13 C -0.16 -1.74 8.87 37.16 0.33 -1.41 16 14 N -0.73 -8.95 4.99 -53.81 -0.27 -9.22 16 15 C 0.53 9.31 7.81 -10.99 -0.09 9.22 16 16 O -0.52 -11.13 15.52 5.56 0.09 -11.04 16 17 C -0.12 -2.38 6.16 36.01 0.22 -2.16 16 18 S -0.14 -3.59 18.55 -107.50 -1.99 -5.58 16 19 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 20 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 21 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 22 N -0.88 -26.62 13.97 55.49 0.78 -25.85 16 23 Si 0.86 21.91 27.74 -169.99 -4.71 17.20 16 24 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.23 -6.01 6.74 56.52 0.38 -5.63 16 27 O -0.20 -1.85 10.77 5.37 0.06 -1.79 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.18 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.12 0.81 8.05 -51.93 -0.42 0.39 16 33 H 0.06 0.32 7.44 -51.93 -0.39 -0.07 16 34 H 0.35 2.48 7.68 -39.29 -0.30 2.18 16 35 H 0.06 0.29 7.45 -51.93 -0.39 -0.10 16 36 H 0.07 0.39 6.29 -51.93 -0.33 0.06 16 37 H 0.07 0.40 6.55 -51.93 -0.34 0.06 16 38 H 0.05 0.48 6.57 -51.93 -0.34 0.14 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.67 7.13 -51.93 -0.37 0.30 16 41 H 0.40 3.69 6.58 -40.82 -0.27 3.42 16 42 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 43 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 44 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 377.66 15.07 5.69 5.69 Total: -1.00 -36.26 377.66 -7.16 -43.41 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -6.47 Total: 1.73 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 0.42 Total: -3.49 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -0.22 Total: -46.12 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.14 Total: -12.83 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.20 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.26 -7.16 -43.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755226104.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.096 kcal (2) G-P(sol) polarization free energy of solvation -36.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds