Wall clock time and date at job start Tue Mar 31 2020 15:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34333 * 126.44063 * 2 1 4 4 N 1.34479 * 107.66487 * 179.76525 * 3 2 1 5 5 C 1.30249 * 108.70461 * 0.41777 * 4 3 2 6 6 C 1.50698 * 125.62475 * 179.84196 * 5 4 3 7 7 N 1.46898 * 109.47103 * 89.68897 * 6 5 4 8 8 C 1.46910 * 111.00082 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.46533 * 35.00684 * 8 7 6 10 10 C 1.52996 * 109.47305 * 275.00524 * 8 7 6 11 11 C 1.52997 * 109.47171 * 155.00194 * 8 7 6 12 12 H 1.09001 * 109.46922 * 295.00468 * 11 8 7 13 13 C 1.53006 * 109.47164 * 55.00220 * 11 8 7 14 14 N 1.46496 * 109.47194 * 175.00134 * 11 8 7 15 15 C 1.34773 * 119.99909 * 155.00140 * 14 11 8 16 16 O 1.21277 * 120.00549 * 359.97438 * 15 14 11 17 17 C 1.50703 * 119.99847 * 180.02562 * 15 14 11 18 18 S 1.81003 * 109.47081 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00192 * 180.02562 * 18 17 15 20 20 H 1.08007 * 119.99936 * 359.97438 * 19 18 17 21 21 C 1.38793 * 120.00306 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00440 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 119.99848 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47375 * 89.99985 * 23 21 19 25 25 H 1.48509 * 109.47291 * 209.99707 * 23 21 19 26 26 H 1.48492 * 109.47325 * 329.99977 * 23 21 19 27 27 O 1.33970 * 108.75694 * 359.57801 * 5 4 3 28 28 H 1.08995 * 109.46810 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47468 * 300.00316 * 1 2 3 30 30 H 1.09005 * 109.46778 * 60.00714 * 1 2 3 31 31 H 1.08000 * 126.16823 * 0.02562 * 3 2 1 32 32 H 1.09001 * 109.46855 * 329.69476 * 6 5 4 33 33 H 1.08995 * 109.47796 * 209.69430 * 6 5 4 34 34 H 1.00901 * 110.99830 * 56.05274 * 7 6 5 35 35 H 1.09004 * 109.47120 * 59.99813 * 10 8 7 36 36 H 1.08998 * 109.47375 * 179.97438 * 10 8 7 37 37 H 1.09000 * 109.46912 * 300.00130 * 10 8 7 38 38 H 1.09001 * 109.47002 * 59.99738 * 13 11 8 39 39 H 1.08993 * 109.46955 * 180.02562 * 13 11 8 40 40 H 1.09000 * 109.47050 * 300.00004 * 13 11 8 41 41 H 0.97003 * 119.99825 * 335.00349 * 14 11 8 42 42 H 1.08988 * 109.47257 * 300.00034 * 17 15 14 43 43 H 1.08997 * 109.47148 * 60.00429 * 17 15 14 44 44 H 0.96996 * 120.00231 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0807 0.0000 4 7 3.5781 0.6478 0.0053 5 6 3.5766 -0.6546 -0.0006 6 6 4.8004 -1.5339 -0.0010 7 7 5.1985 -1.8197 1.3839 8 6 6.3915 -2.6761 1.4227 9 1 7.0484 -2.4218 0.5908 10 6 5.9705 -4.1427 1.3103 11 6 7.1331 -2.4580 2.7431 12 1 7.5101 -1.4361 2.7836 13 6 6.1741 -2.6945 3.9116 14 7 8.2544 -3.3963 2.8341 15 6 9.3216 -3.0986 3.6015 16 8 9.3538 -2.0538 4.2165 17 6 10.4754 -4.0636 3.6947 18 16 11.7436 -3.3834 4.7926 19 6 12.9376 -4.6771 4.7193 20 1 12.7497 -5.5518 4.1142 21 6 14.1196 -4.5722 5.4391 22 7 15.0115 -5.5388 5.3848 23 14 14.4443 -3.0597 6.4862 24 1 13.9200 -3.2850 7.8573 25 1 15.9063 -2.8068 6.5508 26 1 13.7649 -1.8850 5.8833 27 8 2.3075 -1.0839 -0.0003 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.9821 2.1113 0.0004 32 1 5.6146 -1.0230 -0.5149 33 1 4.5762 -2.4686 -0.5148 34 1 4.4378 -2.2353 1.9003 35 1 5.4422 -4.2980 0.3696 36 1 6.8557 -4.7780 1.3387 37 1 5.3136 -4.3968 2.1421 38 1 5.7970 -3.7164 3.8711 39 1 6.7023 -2.5387 4.8522 40 1 5.3398 -1.9964 3.8439 41 1 8.2289 -4.2318 2.3419 42 1 10.1222 -5.0149 4.0924 43 1 10.8997 -4.2194 2.7029 44 1 15.8377 -5.4653 5.8875 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755226104.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:51 Heat of formation + Delta-G solvation = -44.641137 kcal Electronic energy + Delta-G solvation = -24530.622966 eV Core-core repulsion = 20802.756407 eV Total energy + Delta-G solvation = -3727.866559 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.32781 -40.96501 -38.92260 -36.01971 -35.65429 -34.66447 -33.67760 -32.45681 -30.71279 -29.68129 -28.35017 -27.83791 -25.97927 -25.12786 -23.28795 -22.05557 -21.99795 -20.84055 -19.90852 -18.33627 -17.92658 -17.81932 -17.23701 -17.04863 -16.70611 -16.46809 -15.98495 -15.70323 -15.62928 -15.11016 -15.00567 -14.78618 -14.51962 -14.29538 -14.03908 -13.87757 -13.65905 -13.42942 -13.33947 -13.22403 -13.18068 -13.09226 -13.00340 -12.77108 -12.53973 -12.36328 -11.91450 -11.84527 -11.81328 -11.51051 -11.16493 -10.96116 -10.51649 -10.13611 -9.73137 -9.48535 -8.98400 -8.50960 -6.21345 0.38834 1.00033 1.31600 1.47257 1.54058 1.59812 1.62365 1.68666 2.21375 2.26530 2.72513 2.87421 3.00799 3.30858 3.71077 3.84026 3.84706 3.94756 4.06122 4.14820 4.22636 4.25595 4.36094 4.45039 4.48244 4.48578 4.57923 4.69045 4.73360 4.73590 4.86338 4.93583 5.04036 5.05807 5.18996 5.21873 5.32391 5.42462 5.51021 5.71449 5.80293 6.12039 6.23535 6.50924 6.75185 6.94612 7.24831 8.61307 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.036236 B = 0.001850 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.527515 B =15131.750619 C =15462.838327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.044 4.044 3 C -0.070 4.070 4 N -0.498 5.498 5 C 0.178 3.822 6 C 0.164 3.836 7 N -0.684 5.684 8 C 0.094 3.906 9 H 0.095 0.905 10 C -0.187 4.187 11 C 0.155 3.845 12 H 0.063 0.937 13 C -0.156 4.156 14 N -0.706 5.706 15 C 0.536 3.464 16 O -0.562 6.562 17 C -0.111 4.111 18 S -0.179 6.179 19 C -0.528 4.528 20 H 0.063 0.937 21 C 0.047 3.953 22 N -0.916 5.916 23 Si 0.913 3.087 24 H -0.263 1.263 25 H -0.259 1.259 26 H -0.238 1.238 27 O -0.211 6.211 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.201 0.799 32 H 0.115 0.885 33 H 0.087 0.913 34 H 0.353 0.647 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.030 0.970 40 H 0.078 0.922 41 H 0.414 0.586 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.791 5.701 -14.972 36.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.097 4.097 3 C -0.208 4.208 4 N -0.228 5.228 5 C -0.029 4.029 6 C 0.035 3.965 7 N -0.318 5.318 8 C -0.017 4.017 9 H 0.113 0.887 10 C -0.246 4.246 11 C 0.050 3.950 12 H 0.082 0.918 13 C -0.214 4.214 14 N -0.362 5.362 15 C 0.321 3.679 16 O -0.440 6.440 17 C -0.262 4.262 18 S 0.048 5.952 19 C -0.676 4.676 20 H 0.082 0.918 21 C -0.159 4.159 22 N -0.554 5.554 23 Si 0.735 3.265 24 H -0.188 1.188 25 H -0.183 1.183 26 H -0.162 1.162 27 O -0.099 6.099 28 H 0.103 0.897 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.218 0.782 32 H 0.133 0.867 33 H 0.105 0.895 34 H 0.173 0.827 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.049 0.951 40 H 0.096 0.904 41 H 0.253 0.747 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -31.698 8.245 -13.858 35.564 hybrid contribution -0.174 -2.321 -0.476 2.376 sum -31.871 5.924 -14.334 35.445 Atomic orbital electron populations 1.20505 0.80983 1.05295 1.05576 1.24259 0.96586 0.83859 1.05009 1.23536 0.87405 1.01876 1.07953 1.70422 1.24457 1.10372 1.17540 1.26415 0.84528 0.90385 1.01618 1.20318 0.88484 0.96345 0.91373 1.60229 1.08522 1.50778 1.12284 1.21568 0.91647 0.91991 0.96451 0.88684 1.22583 1.03057 0.95407 1.03520 1.20800 0.85614 0.93012 0.95619 0.91832 1.22114 0.99319 1.02918 0.97089 1.45874 1.17627 1.23920 1.48772 1.19960 0.83174 0.86142 0.78624 1.90698 1.80608 1.26978 1.45761 1.23277 0.96255 1.02048 1.04595 1.84770 1.17470 1.30157 1.62809 1.22468 1.05223 1.05668 1.34232 0.91834 1.25532 0.94582 0.99066 0.96679 1.70012 1.09376 1.33887 1.42156 0.85886 0.79219 0.81130 0.80255 1.18761 1.18324 1.16205 1.84388 1.18065 1.37385 1.70020 0.89748 0.87680 0.87434 0.78228 0.86677 0.89466 0.82708 0.90559 0.90767 0.91102 0.90635 0.95058 0.90363 0.74672 0.86796 0.86704 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.29 10.43 71.24 0.74 0.45 16 2 C -0.04 -0.60 7.39 24.79 0.18 -0.42 16 3 C -0.07 -1.17 11.80 83.39 0.98 -0.19 16 4 N -0.50 -11.09 11.29 -303.83 -3.43 -14.52 16 5 C 0.18 3.22 7.86 88.34 0.69 3.91 16 6 C 0.16 2.04 6.11 85.56 0.52 2.57 16 7 N -0.68 -9.38 5.59 -495.58 -2.77 -12.15 16 8 C 0.09 1.21 2.64 44.91 0.12 1.32 16 9 H 0.10 1.19 7.80 -2.39 -0.02 1.17 16 10 C -0.19 -1.51 8.68 71.98 0.62 -0.88 16 11 C 0.15 3.23 2.63 44.99 0.12 3.34 16 12 H 0.06 1.80 7.58 -2.39 -0.02 1.78 16 13 C -0.16 -3.15 8.87 71.98 0.64 -2.51 16 14 N -0.71 -15.95 4.99 -442.54 -2.21 -18.16 16 15 C 0.54 18.28 7.81 87.66 0.68 18.97 16 16 O -0.56 -24.44 15.52 -3.02 -0.05 -24.49 16 17 C -0.11 -4.12 6.16 71.24 0.44 -3.68 16 18 S -0.18 -9.08 18.55 -56.49 -1.05 -10.12 16 19 C -0.53 -30.80 10.04 67.95 0.68 -30.11 16 20 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 21 C 0.05 2.76 5.50 84.86 0.47 3.23 16 22 N -0.92 -55.85 13.97 21.65 0.30 -55.54 16 23 Si 0.91 45.40 27.74 68.60 1.90 47.30 16 24 H -0.26 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 26 H -0.24 -11.88 6.74 99.48 0.67 -11.21 16 27 O -0.21 -3.56 10.77 -3.68 -0.04 -3.60 16 28 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.11 0.10 8.14 -2.38 -0.02 0.08 16 31 H 0.20 2.26 8.06 -2.91 -0.02 2.23 16 32 H 0.12 1.46 8.05 -2.39 -0.02 1.44 16 33 H 0.09 0.64 7.44 -2.39 -0.02 0.62 16 34 H 0.35 4.28 7.68 -89.69 -0.69 3.59 16 35 H 0.08 0.42 7.45 -2.38 -0.02 0.40 16 36 H 0.07 0.54 6.29 -2.39 -0.02 0.53 16 37 H 0.07 0.56 6.55 -2.39 -0.02 0.55 16 38 H 0.07 1.18 6.57 -2.39 -0.02 1.16 16 39 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 1.44 7.13 -2.39 -0.02 1.42 16 41 H 0.41 6.46 6.58 -92.71 -0.61 5.85 16 42 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 43 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 44 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -80.73 377.66 -0.74 -81.47 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -0.30 Total: 13.81 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: 6.90 Total: -4.00 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -8.11 Total: -100.37 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.09 Total: -28.09 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.90 Total: 47.30 kcal Atomic # 16 Polarization: -9.08 SS G_CDS: -1.05 Total: -10.12 kcal Total: -80.73 -0.74 -81.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755226104.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.831 kcal (2) G-P(sol) polarization free energy of solvation -80.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds