Wall clock time and date at job start Tue Mar 31 2020 15:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00594 * 2 1 4 4 C 1.50702 * 109.47458 * 179.97438 * 3 2 1 5 5 N 1.29432 * 124.79984 * 90.02747 * 4 3 2 6 6 C 1.30944 * 117.36137 * 180.02562 * 5 4 3 7 7 C 1.50706 * 122.90295 * 180.02562 * 6 5 4 8 8 C 1.35659 * 114.19176 * 0.02562 * 6 5 4 9 9 C 1.46686 * 126.12948 * 180.02562 * 8 6 5 10 10 O 1.21682 * 120.00039 * 359.97438 * 9 8 6 11 11 N 1.34777 * 119.99968 * 180.02562 * 9 8 6 12 12 C 1.46496 * 119.99867 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.47236 * 324.99587 * 12 11 9 14 14 C 1.52998 * 109.47265 * 84.99704 * 12 11 9 15 15 C 1.53007 * 109.46776 * 204.99688 * 12 11 9 16 16 H 1.09000 * 109.46831 * 299.99625 * 15 12 11 17 17 C 1.52998 * 109.47211 * 59.99983 * 15 12 11 18 18 N 1.46506 * 109.46782 * 180.02562 * 15 12 11 19 19 C 1.36938 * 119.99589 * 155.00217 * 18 15 12 20 20 H 1.07999 * 120.00325 * 359.97438 * 19 18 15 21 21 C 1.38815 * 119.99408 * 179.97438 * 19 18 15 22 22 N 1.31617 * 120.00325 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99550 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47397 * 90.00455 * 23 21 19 25 25 H 1.48510 * 109.46813 * 210.00284 * 23 21 19 26 26 H 1.48495 * 109.47179 * 329.99902 * 23 21 19 27 27 S 1.70945 * 124.80790 * 270.34681 * 4 3 2 28 28 H 1.09000 * 109.47006 * 300.00346 * 1 2 3 29 29 H 1.09006 * 109.46869 * 59.99666 * 1 2 3 30 30 H 1.08997 * 109.47456 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46894 * 60.00137 * 3 2 1 32 32 H 1.08995 * 109.47322 * 300.00427 * 3 2 1 33 33 H 1.09000 * 109.46606 * 269.95833 * 7 6 5 34 34 H 1.08999 * 109.46992 * 29.95624 * 7 6 5 35 35 H 1.08996 * 109.46715 * 149.95817 * 7 6 5 36 36 H 0.96999 * 120.00047 * 359.97438 * 11 9 8 37 37 H 1.09002 * 109.47080 * 179.97438 * 14 12 11 38 38 H 1.08993 * 109.47207 * 300.00033 * 14 12 11 39 39 H 1.09002 * 109.46901 * 60.00077 * 14 12 11 40 40 H 1.09002 * 109.47121 * 299.99744 * 17 15 12 41 41 H 1.09002 * 109.46901 * 59.99641 * 17 15 12 42 42 H 1.09001 * 109.47093 * 179.97438 * 17 15 12 43 43 H 0.96995 * 120.00050 * 334.72425 * 18 15 12 44 44 H 0.97000 * 119.99693 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5126 1.1863 0.0006 5 7 4.2495 1.1282 -1.0619 6 6 5.5437 1.0251 -0.8918 7 6 6.5168 0.9489 -2.0401 8 6 5.9329 0.9928 0.4074 9 6 7.3121 0.8831 0.8946 10 8 8.2332 0.8106 0.1027 11 7 7.5591 0.8615 2.2194 12 6 8.9365 0.7525 2.7060 13 1 9.5109 0.1172 2.0317 14 6 9.5703 2.1440 2.7591 15 6 8.9352 0.1388 4.1076 16 1 8.3609 0.7741 4.7818 17 6 8.3014 -1.2528 4.0544 18 7 10.3127 0.0303 4.5944 19 6 10.5634 0.0085 5.9405 20 1 9.7457 0.0716 6.6432 21 6 11.8686 -0.0948 6.4018 22 7 12.8651 -0.1712 5.5454 23 14 12.2106 -0.1238 8.2380 24 1 12.1914 -1.5272 8.7230 25 1 13.5444 0.4732 8.5025 26 1 11.1680 0.6596 8.9481 27 16 4.4841 1.1010 1.4046 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6887 1.8463 0.8901 32 1 1.6887 1.8463 -0.8899 33 1 6.6704 -0.0940 -2.3174 34 1 6.1159 1.4964 -2.8930 35 1 7.4678 1.3890 -1.7402 36 1 6.8248 0.9188 2.8506 37 1 10.5951 2.0629 3.1216 38 1 9.5712 2.5812 1.7607 39 1 8.9960 2.7793 3.4334 40 1 7.2765 -1.1716 3.6924 41 1 8.8758 -1.8880 3.3801 42 1 8.3009 -1.6901 5.0528 43 1 11.0468 -0.0301 3.9633 44 1 13.7771 -0.2438 5.8678 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755265468.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:05 Heat of formation + Delta-G solvation = -26.874584 kcal Electronic energy + Delta-G solvation = -25278.144676 eV Core-core repulsion = 21551.048532 eV Total energy + Delta-G solvation = -3727.096144 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.59488 -39.42388 -38.24174 -36.75655 -34.02626 -32.71043 -31.84441 -29.91711 -29.15390 -28.48508 -27.95792 -26.51032 -24.02582 -23.37539 -23.03803 -21.42752 -20.29186 -19.38645 -18.33952 -17.51226 -17.09835 -16.92292 -16.23817 -15.96278 -15.52575 -15.22766 -14.65849 -14.41729 -14.15471 -13.95931 -13.66556 -13.36365 -13.23917 -13.08519 -12.85613 -12.67477 -12.52511 -12.44665 -11.92542 -11.87155 -11.71772 -11.55427 -11.21731 -10.98532 -10.86074 -10.71437 -10.38450 -10.24264 -10.14955 -9.94068 -9.85916 -9.77019 -9.66967 -9.13652 -9.02077 -8.81350 -7.01940 -5.79842 -3.09686 -0.08246 0.85803 1.28259 2.14193 3.06258 3.13132 3.25772 3.41504 3.46851 3.48364 3.84278 4.38270 4.56463 4.70179 4.72093 4.78503 4.85571 4.89740 4.94696 5.20769 5.27289 5.46270 5.54414 5.60250 5.63934 5.70957 5.73475 5.85796 6.07242 6.10570 6.23670 6.34865 6.38768 6.48281 6.49123 6.57333 6.77804 6.88654 6.99151 7.31544 7.53141 7.66208 8.17600 8.37536 9.49117 10.03713 10.39039 11.42408 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.020663 B = 0.002520 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.767434 B =11109.553345 C =12066.023918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.139 3.861 4 C 0.048 3.952 5 N -0.458 5.458 6 C 0.143 3.857 7 C -0.089 4.089 8 C -0.286 4.286 9 C 0.595 3.405 10 O -0.520 6.520 11 N -0.710 5.710 12 C 0.136 3.864 13 H 0.089 0.911 14 C -0.153 4.153 15 C 0.169 3.831 16 H 0.051 0.949 17 C -0.165 4.165 18 N -0.717 5.717 19 C -0.239 4.239 20 H 0.071 0.929 21 C -0.012 4.012 22 N -0.930 5.930 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 S 0.190 5.810 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.394 0.606 37 H 0.083 0.917 38 H 0.048 0.952 39 H 0.051 0.949 40 H 0.034 0.966 41 H 0.048 0.952 42 H 0.056 0.944 43 H 0.386 0.614 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.484 4.511 -11.868 27.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.059 3.941 4 C -0.227 4.227 5 N -0.174 5.174 6 C 0.005 3.995 7 C -0.148 4.148 8 C -0.410 4.410 9 C 0.379 3.621 10 O -0.398 6.398 11 N -0.360 5.360 12 C 0.032 3.968 13 H 0.107 0.893 14 C -0.211 4.211 15 C 0.058 3.942 16 H 0.069 0.931 17 C -0.226 4.226 18 N -0.359 5.359 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.578 5.578 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 S 0.447 5.553 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.121 0.879 36 H 0.228 0.772 37 H 0.102 0.898 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.220 0.780 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -24.199 4.342 -11.599 27.184 hybrid contribution 0.329 0.025 0.501 0.600 sum -23.869 4.367 -11.097 26.683 Atomic orbital electron populations 1.22825 0.79774 1.03482 1.00405 1.87974 1.20478 1.26068 1.95537 1.20825 0.84262 0.86278 1.02763 1.26788 1.00464 1.03669 0.91810 1.66021 1.04594 1.15493 1.31329 1.20674 0.89657 0.95316 0.93856 1.20679 0.97135 1.03661 0.93308 1.25719 0.98435 1.19581 0.97310 1.16617 0.85571 0.77013 0.82895 1.90793 1.44102 1.50102 1.54825 1.46006 1.10393 1.73903 1.05697 1.21433 0.80270 0.97981 0.97129 0.89272 1.22061 1.02687 0.95638 1.00728 1.20390 0.89121 0.93814 0.90884 0.93114 1.22464 0.98309 1.00055 1.01745 1.42281 1.00639 1.88097 1.04905 1.19177 0.92007 1.42812 0.83031 0.91152 1.24746 0.95641 1.02813 0.97589 1.69660 0.98615 1.56941 1.32570 0.86197 0.77287 0.77553 0.85153 1.21745 1.21779 1.20788 1.83840 0.96482 1.64295 1.10687 0.93556 0.93533 0.88992 0.90540 0.89742 0.89992 0.90814 0.87911 0.77169 0.89843 0.93314 0.93027 0.94691 0.93292 0.92492 0.77997 0.93429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.41 10.69 -35.23 -0.38 -3.79 16 3 C 0.14 1.05 6.51 36.01 0.23 1.28 16 4 C 0.05 0.51 7.01 -13.29 -0.09 0.41 16 5 N -0.46 -5.77 10.50 -7.70 -0.08 -5.85 16 6 C 0.14 1.88 6.79 -83.89 -0.57 1.31 16 7 C -0.09 -1.05 9.69 36.01 0.35 -0.70 16 8 C -0.29 -3.74 6.48 -37.10 -0.24 -3.98 16 9 C 0.59 8.97 7.74 -12.85 -0.10 8.87 16 10 O -0.52 -9.18 13.93 5.21 0.07 -9.11 16 11 N -0.71 -10.12 4.38 -55.12 -0.24 -10.36 16 12 C 0.14 2.31 2.21 -67.93 -0.15 2.16 16 13 H 0.09 1.68 7.57 -51.93 -0.39 1.29 16 14 C -0.15 -2.61 9.33 37.16 0.35 -2.26 16 15 C 0.17 3.19 2.52 -67.92 -0.17 3.01 16 16 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 17 C -0.17 -2.93 9.34 37.16 0.35 -2.58 16 18 N -0.72 -17.18 4.42 -53.42 -0.24 -17.42 16 19 C -0.24 -6.39 9.93 -15.06 -0.15 -6.53 16 20 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 21 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 22 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 23 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 S 0.19 1.89 22.31 -107.50 -2.40 -0.51 16 28 H 0.05 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.10 1.34 6.01 -51.93 -0.31 1.03 16 36 H 0.39 4.79 7.57 -40.82 -0.31 4.48 16 37 H 0.08 1.61 7.45 -51.93 -0.39 1.23 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.03 0.51 7.45 -51.93 -0.39 0.13 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.39 9.96 7.59 -40.82 -0.31 9.65 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 381.65 15.07 5.75 5.75 Total: -1.00 -32.20 381.65 -7.70 -39.90 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -6.71 Total: 9.41 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 0.82 Total: 1.83 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: 0.17 Total: -60.44 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -0.30 Total: -12.90 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.40 Total: -0.51 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.20 -7.70 -39.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755265468.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.024 kcal (2) G-P(sol) polarization free energy of solvation -32.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds