Wall clock time and date at job start Tue Mar 31 2020 15:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00594 * 2 1 4 4 C 1.50702 * 109.47458 * 179.97438 * 3 2 1 5 5 N 1.29432 * 124.79984 * 90.02747 * 4 3 2 6 6 C 1.30944 * 117.36137 * 180.02562 * 5 4 3 7 7 C 1.50706 * 122.90295 * 180.02562 * 6 5 4 8 8 C 1.35659 * 114.19176 * 0.02562 * 6 5 4 9 9 C 1.46686 * 126.12948 * 180.02562 * 8 6 5 10 10 O 1.21682 * 120.00039 * 359.97438 * 9 8 6 11 11 N 1.34777 * 119.99968 * 180.02562 * 9 8 6 12 12 C 1.46496 * 119.99867 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.47236 * 324.99587 * 12 11 9 14 14 C 1.52998 * 109.47265 * 84.99704 * 12 11 9 15 15 C 1.53007 * 109.46776 * 204.99688 * 12 11 9 16 16 H 1.09000 * 109.46831 * 299.99625 * 15 12 11 17 17 C 1.52998 * 109.47211 * 59.99983 * 15 12 11 18 18 N 1.46506 * 109.46782 * 180.02562 * 15 12 11 19 19 C 1.36938 * 119.99589 * 155.00217 * 18 15 12 20 20 H 1.07999 * 120.00325 * 359.97438 * 19 18 15 21 21 C 1.38815 * 119.99408 * 179.97438 * 19 18 15 22 22 N 1.31617 * 120.00325 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99550 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47397 * 90.00455 * 23 21 19 25 25 H 1.48510 * 109.46813 * 210.00284 * 23 21 19 26 26 H 1.48495 * 109.47179 * 329.99902 * 23 21 19 27 27 S 1.70945 * 124.80790 * 270.34681 * 4 3 2 28 28 H 1.09000 * 109.47006 * 300.00346 * 1 2 3 29 29 H 1.09006 * 109.46869 * 59.99666 * 1 2 3 30 30 H 1.08997 * 109.47456 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46894 * 60.00137 * 3 2 1 32 32 H 1.08995 * 109.47322 * 300.00427 * 3 2 1 33 33 H 1.09000 * 109.46606 * 269.95833 * 7 6 5 34 34 H 1.08999 * 109.46992 * 29.95624 * 7 6 5 35 35 H 1.08996 * 109.46715 * 149.95817 * 7 6 5 36 36 H 0.96999 * 120.00047 * 359.97438 * 11 9 8 37 37 H 1.09002 * 109.47080 * 179.97438 * 14 12 11 38 38 H 1.08993 * 109.47207 * 300.00033 * 14 12 11 39 39 H 1.09002 * 109.46901 * 60.00077 * 14 12 11 40 40 H 1.09002 * 109.47121 * 299.99744 * 17 15 12 41 41 H 1.09002 * 109.46901 * 59.99641 * 17 15 12 42 42 H 1.09001 * 109.47093 * 179.97438 * 17 15 12 43 43 H 0.96995 * 120.00050 * 334.72425 * 18 15 12 44 44 H 0.97000 * 119.99693 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5126 1.1863 0.0006 5 7 4.2495 1.1282 -1.0619 6 6 5.5437 1.0251 -0.8918 7 6 6.5168 0.9489 -2.0401 8 6 5.9329 0.9928 0.4074 9 6 7.3121 0.8831 0.8946 10 8 8.2332 0.8106 0.1027 11 7 7.5591 0.8615 2.2194 12 6 8.9365 0.7525 2.7060 13 1 9.5109 0.1172 2.0317 14 6 9.5703 2.1440 2.7591 15 6 8.9352 0.1388 4.1076 16 1 8.3609 0.7741 4.7818 17 6 8.3014 -1.2528 4.0544 18 7 10.3127 0.0303 4.5944 19 6 10.5634 0.0085 5.9405 20 1 9.7457 0.0716 6.6432 21 6 11.8686 -0.0948 6.4018 22 7 12.8651 -0.1712 5.5454 23 14 12.2106 -0.1238 8.2380 24 1 12.1914 -1.5272 8.7230 25 1 13.5444 0.4732 8.5025 26 1 11.1680 0.6596 8.9481 27 16 4.4841 1.1010 1.4046 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6887 1.8463 0.8901 32 1 1.6887 1.8463 -0.8899 33 1 6.6704 -0.0940 -2.3174 34 1 6.1159 1.4964 -2.8930 35 1 7.4678 1.3890 -1.7402 36 1 6.8248 0.9188 2.8506 37 1 10.5951 2.0629 3.1216 38 1 9.5712 2.5812 1.7607 39 1 8.9960 2.7793 3.4334 40 1 7.2765 -1.1716 3.6924 41 1 8.8758 -1.8880 3.3801 42 1 8.3009 -1.6901 5.0528 43 1 11.0468 -0.0301 3.9633 44 1 13.7771 -0.2438 5.8678 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755265468.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:04 Heat of formation + Delta-G solvation = -49.786060 kcal Electronic energy + Delta-G solvation = -25279.138192 eV Core-core repulsion = 21551.048532 eV Total energy + Delta-G solvation = -3728.089660 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.59824 -40.54358 -38.83720 -38.23589 -35.67164 -33.74567 -33.43033 -31.37458 -30.16250 -29.81982 -29.06704 -26.97068 -25.91592 -24.72202 -23.84728 -22.72049 -21.67991 -20.56524 -19.43120 -19.13139 -18.06596 -17.64548 -17.25996 -16.67997 -16.59581 -16.45818 -16.20587 -15.59317 -15.33281 -15.30160 -14.95987 -14.84792 -14.66906 -14.09798 -13.93767 -13.59578 -13.49223 -13.36611 -13.27678 -13.14726 -12.91932 -12.75127 -12.60585 -12.44503 -12.35432 -12.28630 -12.14127 -11.73182 -11.49114 -11.27201 -10.98534 -10.86100 -10.75335 -10.67960 -10.22859 -9.89761 -9.01259 -7.90900 -5.19989 -0.98139 0.01803 0.40690 1.20711 1.50103 1.51178 1.59323 1.91161 1.99608 2.57216 2.60757 3.19588 3.43146 3.60833 3.73162 3.78956 3.96558 4.02911 4.17010 4.18038 4.32849 4.34116 4.53671 4.57613 4.60100 4.63063 4.67506 4.74919 4.83447 4.86327 4.91089 4.93303 5.02182 5.10904 5.27631 5.30626 5.45467 5.49651 5.56917 6.04353 6.29513 6.31703 6.48882 7.01651 7.36411 8.08860 8.32659 9.32402 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.020663 B = 0.002520 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.767434 B =11109.553345 C =12066.023918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.134 3.866 4 C 0.048 3.952 5 N -0.481 5.481 6 C 0.138 3.862 7 C -0.087 4.087 8 C -0.319 4.319 9 C 0.596 3.404 10 O -0.552 6.552 11 N -0.700 5.700 12 C 0.151 3.849 13 H 0.067 0.933 14 C -0.144 4.144 15 C 0.168 3.832 16 H 0.063 0.937 17 C -0.157 4.157 18 N -0.729 5.729 19 C -0.231 4.231 20 H 0.081 0.919 21 C -0.077 4.077 22 N -0.969 5.969 23 Si 0.970 3.030 24 H -0.291 1.291 25 H -0.300 1.300 26 H -0.267 1.267 27 S 0.248 5.752 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.407 0.593 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.034 0.966 42 H 0.046 0.954 43 H 0.373 0.627 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.835 5.066 -10.993 30.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C 0.055 3.945 4 C -0.226 4.226 5 N -0.198 5.198 6 C -0.001 4.001 7 C -0.146 4.146 8 C -0.443 4.443 9 C 0.383 3.617 10 O -0.433 6.433 11 N -0.351 5.351 12 C 0.046 3.954 13 H 0.085 0.915 14 C -0.202 4.202 15 C 0.059 3.941 16 H 0.081 0.919 17 C -0.217 4.217 18 N -0.369 5.369 19 C -0.363 4.363 20 H 0.099 0.901 21 C -0.269 4.269 22 N -0.620 5.620 23 Si 0.800 3.200 24 H -0.218 1.218 25 H -0.227 1.227 26 H -0.191 1.191 27 S 0.507 5.493 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.114 0.886 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.244 0.756 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.053 0.947 42 H 0.065 0.935 43 H 0.205 0.795 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -27.647 4.904 -10.700 30.048 hybrid contribution 1.173 -0.141 0.166 1.193 sum -26.474 4.763 -10.534 28.888 Atomic orbital electron populations 1.23022 0.77886 1.04296 1.01787 1.87918 1.22570 1.26776 1.95839 1.21088 0.82203 0.86345 1.04871 1.27481 1.02003 1.01408 0.91753 1.66095 1.04332 1.17022 1.32379 1.20855 0.90243 0.94838 0.94154 1.20631 0.96440 1.03748 0.93749 1.25520 0.98591 1.21856 0.98313 1.16844 0.86249 0.76098 0.82549 1.90780 1.45499 1.51421 1.55560 1.45746 1.09522 1.73934 1.05923 1.21010 0.81567 0.97287 0.95546 0.91485 1.21942 1.01280 0.95965 1.01039 1.20552 0.86788 0.94894 0.91876 0.91932 1.22325 0.99913 0.98468 1.00945 1.42449 1.02395 1.88089 1.03995 1.19572 0.92110 1.40292 0.84347 0.90142 1.25531 0.95786 1.04017 1.01535 1.69825 0.98596 1.59295 1.34288 0.85181 0.76852 0.77347 0.80614 1.21803 1.22691 1.19138 1.83537 0.93903 1.62918 1.08982 0.91795 0.92511 0.88573 0.87436 0.88636 0.89935 0.89385 0.89457 0.75609 0.92530 0.93036 0.91686 0.91285 0.94718 0.93502 0.79528 0.94202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.41 -6.29 10.69 -148.98 -1.59 -7.88 16 3 C 0.13 1.62 6.51 71.24 0.46 2.08 16 4 C 0.05 0.90 7.01 88.46 0.62 1.52 16 5 N -0.48 -11.41 10.50 -178.28 -1.87 -13.28 16 6 C 0.14 3.52 6.79 42.10 0.29 3.80 16 7 C -0.09 -2.06 9.69 71.24 0.69 -1.37 16 8 C -0.32 -7.95 6.48 23.88 0.15 -7.79 16 9 C 0.60 17.65 7.74 86.45 0.67 18.31 16 10 O -0.55 -19.83 13.93 -4.29 -0.06 -19.89 16 11 N -0.70 -19.02 4.38 -446.51 -1.96 -20.98 16 12 C 0.15 5.08 2.21 44.99 0.10 5.18 16 13 H 0.07 2.59 7.57 -2.39 -0.02 2.58 16 14 C -0.14 -4.90 9.33 71.98 0.67 -4.23 16 15 C 0.17 6.18 2.52 44.99 0.11 6.29 16 16 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 17 C -0.16 -5.31 9.34 71.98 0.67 -4.63 16 18 N -0.73 -35.10 4.42 -322.92 -1.43 -36.53 16 19 C -0.23 -12.26 9.93 84.03 0.83 -11.42 16 20 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 21 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 22 N -0.97 -58.72 13.06 21.65 0.28 -58.44 16 23 Si 0.97 45.28 29.55 68.60 2.03 47.31 16 24 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 25 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 27 S 0.25 4.27 22.31 -56.49 -1.26 3.01 16 28 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.06 0.29 8.14 -2.38 -0.02 0.27 16 30 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.11 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.09 2.35 6.01 -2.39 -0.01 2.34 16 36 H 0.41 8.84 7.57 -92.71 -0.70 8.14 16 37 H 0.06 2.24 7.45 -2.39 -0.02 2.22 16 38 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.06 2.00 8.14 -2.39 -0.02 1.99 16 40 H 0.07 1.85 7.45 -2.39 -0.02 1.83 16 41 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.37 19.81 7.59 -92.71 -0.70 19.10 16 44 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -70.19 381.65 0.75 -69.44 By element: Atomic # 1 Polarization: 32.26 SS G_CDS: -0.38 Total: 31.88 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 6.99 Total: 5.36 kcal Atomic # 7 Polarization: -124.25 SS G_CDS: -4.97 Total: -129.22 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -1.65 Total: -27.77 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Atomic # 16 Polarization: 4.27 SS G_CDS: -1.26 Total: 3.01 kcal Total: -70.19 0.75 -69.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755265468.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.651 kcal (2) G-P(sol) polarization free energy of solvation -70.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds