Wall clock time and date at job start Tue Mar 31 2020 15:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00116 * 2 1 4 4 C 1.50693 * 109.47407 * 179.97438 * 3 2 1 5 5 N 1.29434 * 124.80566 * 90.02243 * 4 3 2 6 6 C 1.30939 * 117.36344 * 179.73969 * 5 4 3 7 7 C 1.50707 * 122.90043 * 179.97438 * 6 5 4 8 8 C 1.35655 * 114.19519 * 0.02562 * 6 5 4 9 9 C 1.46682 * 126.13367 * 179.97438 * 8 6 5 10 10 O 1.21696 * 119.99892 * 0.02562 * 9 8 6 11 11 N 1.34771 * 120.00484 * 179.97438 * 9 8 6 12 12 C 1.46498 * 120.00218 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.47448 * 35.00260 * 12 11 9 14 14 C 1.53005 * 109.47033 * 275.00248 * 12 11 9 15 15 C 1.52999 * 109.47096 * 155.00197 * 12 11 9 16 16 H 1.09006 * 109.47503 * 60.00033 * 15 12 11 17 17 C 1.52995 * 109.47186 * 300.00072 * 15 12 11 18 18 N 1.46508 * 109.47184 * 179.97438 * 15 12 11 19 19 C 1.36935 * 119.99687 * 205.00120 * 18 15 12 20 20 H 1.07996 * 120.00408 * 0.02562 * 19 18 15 21 21 C 1.38818 * 119.99517 * 179.97438 * 19 18 15 22 22 N 1.31619 * 119.99910 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99963 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46946 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47316 * 119.99799 * 23 21 19 26 26 H 1.48503 * 109.46691 * 240.00183 * 23 21 19 27 27 S 1.70953 * 124.80453 * 269.72481 * 4 3 2 28 28 H 1.09007 * 109.47044 * 60.00424 * 1 2 3 29 29 H 1.08998 * 109.47229 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47317 * 300.00303 * 1 2 3 31 31 H 1.09009 * 109.46981 * 59.99414 * 3 2 1 32 32 H 1.08997 * 109.47074 * 300.00176 * 3 2 1 33 33 H 1.09005 * 109.46722 * 90.02370 * 7 6 5 34 34 H 1.08993 * 109.46936 * 210.02306 * 7 6 5 35 35 H 1.08994 * 109.46935 * 330.02384 * 7 6 5 36 36 H 0.97004 * 119.99773 * 0.02562 * 11 9 8 37 37 H 1.09007 * 109.46692 * 180.02562 * 14 12 11 38 38 H 1.09006 * 109.46961 * 299.99597 * 14 12 11 39 39 H 1.08996 * 109.46968 * 59.99840 * 14 12 11 40 40 H 1.08999 * 109.46920 * 299.99669 * 17 15 12 41 41 H 1.08998 * 109.47350 * 60.00031 * 17 15 12 42 42 H 1.09007 * 109.47336 * 180.02562 * 17 15 12 43 43 H 0.96994 * 120.00061 * 24.99689 * 18 15 12 44 44 H 0.97005 * 119.99442 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2495 1.1284 -1.0618 6 6 5.5441 1.0311 -0.8917 7 6 6.5172 0.9545 -2.0399 8 6 5.9337 1.0043 0.4075 9 6 7.3133 0.9007 0.8948 10 8 8.2346 0.8297 0.1029 11 7 7.5607 0.8852 2.2195 12 6 8.9387 0.7823 2.7061 13 1 9.6035 1.3216 2.0315 14 6 9.3518 -0.6899 2.7603 15 6 9.0314 1.3899 4.1072 16 1 8.3666 0.8506 4.7820 17 6 8.6183 2.8620 4.0530 18 7 10.4093 1.2865 4.5942 19 6 10.6604 1.2706 5.9402 20 1 9.8427 1.3339 6.6429 21 6 11.9659 1.1721 6.4016 22 7 12.9623 1.0934 5.5452 23 14 12.3085 1.1497 8.2378 24 1 11.0270 1.2494 8.9816 25 1 12.9931 -0.1178 8.5982 26 1 13.1774 2.3003 8.5932 27 16 4.4852 1.1164 1.4047 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8463 -0.8899 33 1 6.8294 1.9608 -2.3193 34 1 7.3891 0.3739 -1.7390 35 1 6.0367 0.4734 -2.8918 36 1 6.8264 0.9421 2.8507 37 1 10.3770 -0.7665 3.1229 38 1 8.6870 -1.2293 3.4351 39 1 9.2857 -1.1228 1.7622 40 1 9.2831 3.4014 3.3784 41 1 7.5930 2.9386 3.6910 42 1 8.6848 3.2951 5.0512 43 1 11.1437 1.2292 3.9631 44 1 13.8746 1.0249 5.8677 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755265469.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:09 Heat of formation + Delta-G solvation = -26.988955 kcal Electronic energy + Delta-G solvation = -25267.784301 eV Core-core repulsion = 21540.683197 eV Total energy + Delta-G solvation = -3727.101103 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.59560 -39.42406 -38.24432 -36.75884 -34.02851 -32.71175 -31.84755 -29.91725 -29.15578 -28.49178 -27.95930 -26.51426 -24.03136 -23.37736 -23.03881 -21.43008 -20.29311 -19.38881 -18.34027 -17.51680 -17.09868 -16.92619 -16.23983 -15.96459 -15.50455 -15.26809 -14.66524 -14.35364 -14.20529 -13.95817 -13.66845 -13.36269 -13.24575 -13.08705 -12.86096 -12.67388 -12.52615 -12.45426 -11.90986 -11.89080 -11.72147 -11.55421 -11.21969 -10.99511 -10.86568 -10.72750 -10.38948 -10.21568 -10.15013 -9.94034 -9.85870 -9.77023 -9.67446 -9.13855 -9.02632 -8.81803 -7.02239 -5.80349 -3.10130 -0.08279 0.85597 1.28056 2.14327 3.06047 3.12715 3.25525 3.40988 3.46692 3.48849 3.84261 4.38169 4.56129 4.70099 4.72004 4.78420 4.85307 4.89492 4.94597 5.20178 5.27065 5.45949 5.53947 5.60304 5.63629 5.70671 5.73315 5.85492 6.06846 6.10509 6.23886 6.34528 6.38208 6.47628 6.48660 6.57052 6.77663 6.88433 6.98270 7.31471 7.53009 7.66409 8.17484 8.37024 9.48709 10.03299 10.38589 11.41960 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.021357 B = 0.002488 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.737234 B =11250.568344 C =12094.717244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.139 3.861 4 C 0.048 3.952 5 N -0.458 5.458 6 C 0.143 3.857 7 C -0.089 4.089 8 C -0.286 4.286 9 C 0.595 3.405 10 O -0.520 6.520 11 N -0.709 5.709 12 C 0.136 3.864 13 H 0.089 0.911 14 C -0.153 4.153 15 C 0.168 3.832 16 H 0.051 0.949 17 C -0.165 4.165 18 N -0.717 5.717 19 C -0.238 4.238 20 H 0.071 0.929 21 C -0.012 4.012 22 N -0.930 5.930 23 Si 0.907 3.093 24 H -0.281 1.281 25 H -0.291 1.291 26 H -0.292 1.292 27 S 0.189 5.811 28 H 0.046 0.954 29 H 0.092 0.908 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.394 0.606 37 H 0.083 0.917 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.034 0.966 42 H 0.056 0.944 43 H 0.386 0.614 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.843 0.296 -11.870 27.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.059 3.941 4 C -0.227 4.227 5 N -0.174 5.174 6 C 0.005 3.995 7 C -0.148 4.148 8 C -0.410 4.410 9 C 0.379 3.621 10 O -0.398 6.398 11 N -0.360 5.360 12 C 0.032 3.968 13 H 0.107 0.893 14 C -0.212 4.212 15 C 0.058 3.942 16 H 0.069 0.931 17 C -0.225 4.225 18 N -0.359 5.359 19 C -0.370 4.370 20 H 0.089 0.911 21 C -0.208 4.208 22 N -0.578 5.578 23 Si 0.738 3.262 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 S 0.447 5.553 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.121 0.879 35 H 0.092 0.908 36 H 0.228 0.772 37 H 0.101 0.899 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.075 0.925 43 H 0.220 0.780 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -24.568 0.103 -11.599 27.169 hybrid contribution 0.360 0.256 0.497 0.665 sum -24.209 0.360 -11.102 26.635 Atomic orbital electron populations 1.22826 0.79782 1.03470 1.00420 1.87973 1.20472 1.26078 1.95541 1.20829 0.84259 0.86266 1.02778 1.26780 1.00454 1.03664 0.91803 1.66019 1.04610 1.15474 1.31335 1.20672 0.89665 0.95303 0.93856 1.20678 0.96799 1.03963 0.93351 1.25716 0.98454 1.19557 0.97304 1.16619 0.85601 0.76987 0.82895 1.90797 1.44001 1.50205 1.54828 1.46006 1.10354 1.73934 1.05698 1.21434 0.80761 0.97494 0.97112 0.89268 1.22067 1.03412 0.94906 1.00768 1.20390 0.89619 0.93321 0.90898 0.93120 1.22458 0.98584 0.99744 1.01740 1.42287 1.00565 1.88162 1.04922 1.19223 0.92031 1.42674 0.83029 0.91093 1.24751 0.95657 1.02823 0.97602 1.69674 0.98575 1.57037 1.32479 0.86125 0.77765 0.77191 0.85123 1.20589 1.21858 1.21895 1.83843 0.96445 1.64369 1.10687 0.93527 0.89004 0.93550 0.90528 0.89735 0.90014 0.87904 0.90793 0.77167 0.89851 0.93008 0.93294 0.93293 0.94716 0.92493 0.77995 0.93480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.38 -3.38 10.69 -35.23 -0.38 -3.76 16 3 C 0.14 1.04 6.51 36.00 0.23 1.28 16 4 C 0.05 0.51 7.02 -13.29 -0.09 0.42 16 5 N -0.46 -5.77 10.50 -7.70 -0.08 -5.85 16 6 C 0.14 1.88 6.79 -83.89 -0.57 1.31 16 7 C -0.09 -1.05 9.70 36.01 0.35 -0.70 16 8 C -0.29 -3.74 6.48 -37.10 -0.24 -3.98 16 9 C 0.59 8.96 7.74 -12.85 -0.10 8.86 16 10 O -0.52 -9.18 13.93 5.19 0.07 -9.11 16 11 N -0.71 -10.12 4.38 -55.11 -0.24 -10.36 16 12 C 0.14 2.31 2.21 -67.93 -0.15 2.16 16 13 H 0.09 1.68 7.58 -51.93 -0.39 1.29 16 14 C -0.15 -2.63 9.33 37.16 0.35 -2.29 16 15 C 0.17 3.17 2.52 -67.93 -0.17 3.00 16 16 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 17 C -0.17 -2.88 9.33 37.16 0.35 -2.53 16 18 N -0.72 -17.15 4.43 -53.42 -0.24 -17.39 16 19 C -0.24 -6.36 9.93 -15.06 -0.15 -6.51 16 20 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -27.51 13.06 55.49 0.72 -26.78 16 23 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 S 0.19 1.89 22.31 -107.50 -2.40 -0.51 16 28 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.08 0.38 8.14 -51.92 -0.42 -0.05 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.10 1.36 6.01 -51.93 -0.31 1.04 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.39 4.78 7.57 -40.82 -0.31 4.47 16 37 H 0.08 1.62 7.44 -51.92 -0.39 1.23 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.03 0.50 7.45 -51.93 -0.39 0.11 16 42 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 43 H 0.39 9.94 7.58 -40.82 -0.31 9.63 16 44 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 381.63 15.07 5.75 5.75 Total: -1.00 -32.18 381.63 -7.70 -39.88 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -6.71 Total: 9.34 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 0.82 Total: 1.85 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: 0.17 Total: -60.38 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.30 Total: -12.87 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.40 Total: -0.51 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.18 -7.70 -39.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755265469.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.888 kcal (2) G-P(sol) polarization free energy of solvation -32.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds