Wall clock time and date at job start Tue Mar 31 2020 15:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00116 * 2 1 4 4 C 1.50693 * 109.47407 * 179.97438 * 3 2 1 5 5 N 1.29434 * 124.80566 * 90.02243 * 4 3 2 6 6 C 1.30939 * 117.36344 * 179.73969 * 5 4 3 7 7 C 1.50707 * 122.90043 * 179.97438 * 6 5 4 8 8 C 1.35655 * 114.19519 * 0.02562 * 6 5 4 9 9 C 1.46682 * 126.13367 * 179.97438 * 8 6 5 10 10 O 1.21696 * 119.99892 * 0.02562 * 9 8 6 11 11 N 1.34771 * 120.00484 * 179.97438 * 9 8 6 12 12 C 1.46498 * 120.00218 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.47448 * 35.00260 * 12 11 9 14 14 C 1.53005 * 109.47033 * 275.00248 * 12 11 9 15 15 C 1.52999 * 109.47096 * 155.00197 * 12 11 9 16 16 H 1.09006 * 109.47503 * 60.00033 * 15 12 11 17 17 C 1.52995 * 109.47186 * 300.00072 * 15 12 11 18 18 N 1.46508 * 109.47184 * 179.97438 * 15 12 11 19 19 C 1.36935 * 119.99687 * 205.00120 * 18 15 12 20 20 H 1.07996 * 120.00408 * 0.02562 * 19 18 15 21 21 C 1.38818 * 119.99517 * 179.97438 * 19 18 15 22 22 N 1.31619 * 119.99910 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99963 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46946 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47316 * 119.99799 * 23 21 19 26 26 H 1.48503 * 109.46691 * 240.00183 * 23 21 19 27 27 S 1.70953 * 124.80453 * 269.72481 * 4 3 2 28 28 H 1.09007 * 109.47044 * 60.00424 * 1 2 3 29 29 H 1.08998 * 109.47229 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47317 * 300.00303 * 1 2 3 31 31 H 1.09009 * 109.46981 * 59.99414 * 3 2 1 32 32 H 1.08997 * 109.47074 * 300.00176 * 3 2 1 33 33 H 1.09005 * 109.46722 * 90.02370 * 7 6 5 34 34 H 1.08993 * 109.46936 * 210.02306 * 7 6 5 35 35 H 1.08994 * 109.46935 * 330.02384 * 7 6 5 36 36 H 0.97004 * 119.99773 * 0.02562 * 11 9 8 37 37 H 1.09007 * 109.46692 * 180.02562 * 14 12 11 38 38 H 1.09006 * 109.46961 * 299.99597 * 14 12 11 39 39 H 1.08996 * 109.46968 * 59.99840 * 14 12 11 40 40 H 1.08999 * 109.46920 * 299.99669 * 17 15 12 41 41 H 1.08998 * 109.47350 * 60.00031 * 17 15 12 42 42 H 1.09007 * 109.47336 * 180.02562 * 17 15 12 43 43 H 0.96994 * 120.00061 * 24.99689 * 18 15 12 44 44 H 0.97005 * 119.99442 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2495 1.1284 -1.0618 6 6 5.5441 1.0311 -0.8917 7 6 6.5172 0.9545 -2.0399 8 6 5.9337 1.0043 0.4075 9 6 7.3133 0.9007 0.8948 10 8 8.2346 0.8297 0.1029 11 7 7.5607 0.8852 2.2195 12 6 8.9387 0.7823 2.7061 13 1 9.6035 1.3216 2.0315 14 6 9.3518 -0.6899 2.7603 15 6 9.0314 1.3899 4.1072 16 1 8.3666 0.8506 4.7820 17 6 8.6183 2.8620 4.0530 18 7 10.4093 1.2865 4.5942 19 6 10.6604 1.2706 5.9402 20 1 9.8427 1.3339 6.6429 21 6 11.9659 1.1721 6.4016 22 7 12.9623 1.0934 5.5452 23 14 12.3085 1.1497 8.2378 24 1 11.0270 1.2494 8.9816 25 1 12.9931 -0.1178 8.5982 26 1 13.1774 2.3003 8.5932 27 16 4.4852 1.1164 1.4047 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8463 -0.8899 33 1 6.8294 1.9608 -2.3193 34 1 7.3891 0.3739 -1.7390 35 1 6.0367 0.4734 -2.8918 36 1 6.8264 0.9421 2.8507 37 1 10.3770 -0.7665 3.1229 38 1 8.6870 -1.2293 3.4351 39 1 9.2857 -1.1228 1.7622 40 1 9.2831 3.4014 3.3784 41 1 7.5930 2.9386 3.6910 42 1 8.6848 3.2951 5.0512 43 1 11.1437 1.2292 3.9631 44 1 13.8746 1.0249 5.8677 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755265469.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:09 Heat of formation + Delta-G solvation = -49.888900 kcal Electronic energy + Delta-G solvation = -25268.777317 eV Core-core repulsion = 21540.683197 eV Total energy + Delta-G solvation = -3728.094119 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.59782 -40.54309 -38.83636 -38.23501 -35.67196 -33.74541 -33.43019 -31.37641 -30.16086 -29.82039 -29.06777 -26.97080 -25.91756 -24.72385 -23.84724 -22.72003 -21.67888 -20.56495 -19.43245 -19.13160 -18.06689 -17.65044 -17.24760 -16.68079 -16.59763 -16.45996 -16.22331 -15.55237 -15.35310 -15.30999 -14.94488 -14.85589 -14.67326 -14.09736 -13.96185 -13.53524 -13.51502 -13.37038 -13.28045 -13.15156 -12.94815 -12.75304 -12.61017 -12.44616 -12.35434 -12.28896 -12.08770 -11.73319 -11.49045 -11.27610 -10.99855 -10.85711 -10.75365 -10.67964 -10.22975 -9.89732 -9.01210 -7.91177 -5.20131 -0.98078 0.01735 0.40563 1.20892 1.50144 1.50209 1.59998 1.91219 1.99389 2.57043 2.60480 3.19645 3.43130 3.60847 3.73085 3.78974 3.96539 4.02905 4.16859 4.17806 4.32766 4.33974 4.53779 4.57807 4.60109 4.62862 4.67897 4.74952 4.83270 4.86317 4.91086 4.93241 5.02489 5.11219 5.27644 5.30308 5.45280 5.50421 5.57192 6.04187 6.29476 6.31683 6.48907 7.01642 7.36318 8.08825 8.32500 9.32339 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.021357 B = 0.002488 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.737234 B =11250.568344 C =12094.717244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.134 3.866 4 C 0.049 3.951 5 N -0.481 5.481 6 C 0.138 3.862 7 C -0.087 4.087 8 C -0.318 4.318 9 C 0.596 3.404 10 O -0.552 6.552 11 N -0.700 5.700 12 C 0.151 3.849 13 H 0.068 0.932 14 C -0.145 4.145 15 C 0.168 3.832 16 H 0.062 0.938 17 C -0.156 4.156 18 N -0.729 5.729 19 C -0.230 4.230 20 H 0.081 0.919 21 C -0.077 4.077 22 N -0.969 5.969 23 Si 0.970 3.030 24 H -0.263 1.263 25 H -0.297 1.297 26 H -0.298 1.298 27 S 0.248 5.752 28 H 0.056 0.944 29 H 0.096 0.904 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.407 0.593 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.050 0.950 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.046 0.954 43 H 0.373 0.627 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.238 0.667 -11.007 30.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C 0.055 3.945 4 C -0.226 4.226 5 N -0.198 5.198 6 C -0.001 4.001 7 C -0.146 4.146 8 C -0.443 4.443 9 C 0.383 3.617 10 O -0.433 6.433 11 N -0.351 5.351 12 C 0.046 3.954 13 H 0.086 0.914 14 C -0.203 4.203 15 C 0.058 3.942 16 H 0.080 0.920 17 C -0.216 4.216 18 N -0.370 5.370 19 C -0.362 4.362 20 H 0.099 0.901 21 C -0.269 4.269 22 N -0.620 5.620 23 Si 0.800 3.200 24 H -0.187 1.187 25 H -0.224 1.224 26 H -0.226 1.226 27 S 0.506 5.494 28 H 0.075 0.925 29 H 0.115 0.885 30 H 0.082 0.918 31 H 0.125 0.875 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.244 0.756 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.205 0.795 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -28.061 0.484 -10.712 30.040 hybrid contribution 1.217 0.138 0.163 1.235 sum -26.844 0.621 -10.550 28.850 Atomic orbital electron populations 1.23024 0.77892 1.04310 1.01778 1.87919 1.22562 1.26743 1.95838 1.21088 0.82211 0.86357 1.04852 1.27472 1.01994 1.01404 0.91754 1.66093 1.04346 1.17013 1.32388 1.20851 0.90247 0.94821 0.94155 1.20631 0.96213 1.04048 0.93680 1.25515 0.98606 1.21851 0.98305 1.16846 0.86279 0.76070 0.82549 1.90785 1.45400 1.51517 1.55563 1.45745 1.09469 1.73979 1.05923 1.21010 0.81974 0.96792 0.95606 0.91386 1.21951 1.02044 0.95320 1.00989 1.20557 0.87226 0.94549 0.91818 0.92016 1.22314 1.00366 0.97920 1.00976 1.42458 1.02334 1.88162 1.04004 1.19608 0.92114 1.40085 0.84345 0.90115 1.25532 0.95818 1.04064 1.01522 1.69834 0.98579 1.59409 1.34205 0.85115 0.77882 0.76338 0.80674 1.18727 1.22435 1.22576 1.83539 0.93861 1.62985 1.08969 0.92530 0.88535 0.91809 0.87456 0.88662 0.89546 0.89603 0.89616 0.75605 0.92508 0.91775 0.93114 0.94648 0.91162 0.93497 0.79524 0.94216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 113.37 1.25 1.43 16 2 O -0.41 -6.22 10.69 -148.98 -1.59 -7.81 16 3 C 0.13 1.62 6.51 71.23 0.46 2.08 16 4 C 0.05 0.90 7.02 88.46 0.62 1.53 16 5 N -0.48 -11.40 10.50 -178.29 -1.87 -13.28 16 6 C 0.14 3.52 6.79 42.10 0.29 3.80 16 7 C -0.09 -2.06 9.70 71.24 0.69 -1.37 16 8 C -0.32 -7.93 6.48 23.88 0.15 -7.78 16 9 C 0.60 17.62 7.74 86.45 0.67 18.29 16 10 O -0.55 -19.82 13.93 -4.34 -0.06 -19.88 16 11 N -0.70 -18.99 4.38 -446.50 -1.96 -20.94 16 12 C 0.15 5.08 2.21 44.99 0.10 5.18 16 13 H 0.07 2.62 7.58 -2.39 -0.02 2.60 16 14 C -0.14 -4.98 9.33 71.98 0.67 -4.31 16 15 C 0.17 6.13 2.52 44.99 0.11 6.24 16 16 H 0.06 2.16 8.08 -2.38 -0.02 2.14 16 17 C -0.16 -5.18 9.33 71.98 0.67 -4.51 16 18 N -0.73 -35.02 4.43 -322.93 -1.43 -36.45 16 19 C -0.23 -12.14 9.93 84.04 0.83 -11.31 16 20 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 21 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 22 N -0.97 -58.71 13.06 21.65 0.28 -58.43 16 23 Si 0.97 45.28 29.55 68.60 2.03 47.31 16 24 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 25 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 26 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 27 S 0.25 4.26 22.31 -56.49 -1.26 3.00 16 28 H 0.06 0.29 8.14 -2.38 -0.02 0.27 16 29 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.09 2.34 6.01 -2.39 -0.01 2.33 16 35 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.41 8.82 7.57 -92.71 -0.70 8.12 16 37 H 0.06 2.26 7.44 -2.38 -0.02 2.24 16 38 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 39 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.07 1.82 7.45 -2.39 -0.02 1.80 16 42 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 43 H 0.37 19.76 7.58 -92.71 -0.70 19.06 16 44 H 0.25 14.72 8.31 -92.70 -0.77 13.95 16 Total: -1.00 -70.18 381.63 0.75 -69.43 By element: Atomic # 1 Polarization: 32.01 SS G_CDS: -0.38 Total: 31.63 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 6.99 Total: 5.42 kcal Atomic # 7 Polarization: -124.12 SS G_CDS: -4.97 Total: -129.10 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -1.65 Total: -27.69 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Atomic # 16 Polarization: 4.26 SS G_CDS: -1.26 Total: 3.00 kcal Total: -70.18 0.75 -69.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755265469.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.539 kcal (2) G-P(sol) polarization free energy of solvation -70.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds